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MCL coexpression mm9:229: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!1.49e-14!22;UBERON:0007499!1.49e-14!22;UBERON:0006925!1.49e-14!22;UBERON:0009497!1.49e-14!22;UBERON:0000015!1.49e-14!22;UBERON:0002423!1.49e-14!22;UBERON:0006235!1.49e-14!22;UBERON:0008835!1.49e-14!22;UBERON:0003894!1.49e-14!22;UBERON:0004161!1.49e-14!22;UBERON:0008836!1.49e-14!22;UBERON:0009854!1.00e-13!23;UBERON:0009856!1.00e-13!23;UBERON:0002365!2.84e-12!25;UBERON:0002330!2.84e-12!25;UBERON:0005172!6.39e-08!49;UBERON:0005173!6.39e-08!49;UBERON:0002417!6.39e-08!49;UBERON:0000916!6.39e-08!49;UBERON:0005256!2.38e-07!45
|tfbs_overrepresentation_for_novel_motifs=0.0413918,0.0142405,0.136137,1.1916,1.09379,0.477421,0.0999514,0.233506,0.0592285,0.0193351,0.0797769,0.313172,0.0159381,0.344675,0.850466,0,0.219948,1.40558,0.199105,0.0511272,0.257014,0.479715,0.105521,0.295133,0.0359234,0.765668,0.310154,0.520899,0.0183682,0.305597,0.226861,0.792615,0.276494,0.396684,0.0135241,0.0123317,0.00858937,0.308579,0.597103,0.00402253,0.495389,0.0653858,1.13969,0.171902,0.00917849,0.051485,0.168814,0.0754467,2.44156,0.674939,0.208313,0.418967,0.280726,0.401722,0.415953,0.35415,0.227815,0.618102,0.281837,0.108526,0.276833,0.139862,0.691468,0.200931,0.115245,0.227914,0.531135,0.84881,0.273438,0.711943,0.0289067,0.864253,5.2419e-05,1.12847,0.0011271,0.0616852,0.0690293,0.161952,0.264428,2.03877,0.621215,0.231745,0.430279,0.365955,0.350386,7.84242e-05,0.000660881,0.101973,0.171806,1.00305,0.592345,0.354286,0.81417,1.12775,0.00595581,1.72701,0.812838,0.303162,0.504794,0.0712566,0.446256,0.792145,0.387634,0.600658,0.20801,0.0652131,0.24871,0.0737572,0.112458,0.0250628,0.153706,0.389069,0.496004,0.279833,0.598607,0.285849,4.52516e-05,0.0567793,0.220825,0.434443,0.448157,0.549804,0.121031,0.16141,0.647114,0.267084,0.692294,0.296009,0.529818,0.814978,0.374039,0.433678,0.504302,0.116549,0.617878,0.0429794,1.05338,0.505179,0.574183,1.36129,0.972535,0.535229,0.400744,0.810229,0.203754,0.233214,0.170717,1.32235,0.387049,0.302389,0.315022,2.35457e-05,0.402997,0.027977,0.116068,0.470737,1.34676,0.071462,1.00965,0.0439242,0.582585,0.349717,0.267404,0.0385939,0.583725,0.361253,0.0435759,0.642999,0.0170506
|tfbs_overrepresentation_jaspar=MA0003.1;8.39735e-06,MA0004.1;0.449155,MA0006.1;0.061309,MA0007.1;0.41953,MA0009.1;0.311311,MA0014.1;2.93054e-05,MA0017.1;2.70476,MA0019.1;0.184364,MA0024.1;0.2788,MA0025.1;0.500436,MA0027.1;1.85482,MA0028.1;0.0143967,MA0029.1;0.727667,MA0030.1;1.35623,MA0031.1;1.9558,MA0038.1;0.120029,MA0040.1;2.35282,MA0041.1;7.63615,MA0042.1;2.6623,MA0043.1;1.00484,MA0046.1;1.61204,MA0048.1;0.000319981,MA0050.1;0.24732,MA0051.1;0.786554,MA0052.1;0.326972,MA0055.1;0.0509499,MA0056.1;0,MA0057.1;0.114384,MA0058.1;0.508096,MA0059.1;0.859481,MA0060.1;0.00416002,MA0061.1;0.0355727,MA0063.1;0,MA0066.1;0.114312,MA0067.1;0.597474,MA0068.1;0.328696,MA0069.1;1.5711,MA0070.1;0.856383,MA0071.1;0.900308,MA0072.1;0.841934,MA0073.1;0.00111687,MA0074.1;0.319476,MA0076.1;0.0915916,MA0077.1;0.805245,MA0078.1;1.39511,MA0081.1;0.143839,MA0083.1;0.386189,MA0084.1;0.899737,MA0087.1;0.351973,MA0088.1;0.00235459,MA0089.1;0,MA0090.1;0.168659,MA0091.1;0.475676,MA0092.1;0.383142,MA0093.1;0.36952,MA0095.1;0,MA0098.1;0,MA0100.1;0.0911141,MA0101.1;0.309403,MA0103.1;0.414978,MA0105.1;0.00663914,MA0106.1;0.147433,MA0107.1;0.0180044,MA0108.2;0.198959,MA0109.1;0,MA0111.1;0.409621,MA0113.1;0.816469,MA0114.1;3.34384,MA0115.1;3.66844,MA0116.1;0.012748,MA0117.1;0.363331,MA0119.1;1.74054,MA0122.1;0.379112,MA0124.1;0.550539,MA0125.1;0.486591,MA0130.1;0,MA0131.1;0.181514,MA0132.1;0,MA0133.1;0,MA0135.1;1.88059,MA0136.1;0.106221,MA0139.1;0.0494054,MA0140.1;0.304632,MA0141.1;1.50435,MA0142.1;0.232577,MA0143.1;0.140685,MA0144.1;0.221379,MA0145.1;0.0278447,MA0146.1;0.00311569,MA0147.1;0.245652,MA0148.1;2.92845,MA0149.1;0.0337842,MA0062.2;0.00742176,MA0035.2;0.641981,MA0039.2;4.231e-05,MA0138.2;0.17657,MA0002.2;0.582231,MA0137.2;0.45752,MA0104.2;0.0623185,MA0047.2;2.4592,MA0112.2;0.111037,MA0065.2;2.72939,MA0150.1;0.0502988,MA0151.1;0,MA0152.1;0.380639,MA0153.1;1.92705,MA0154.1;0.134265,MA0155.1;0.147009,MA0156.1;0.0909568,MA0157.1;1.78621,MA0158.1;0,MA0159.1;0.266456,MA0160.1;0.488147,MA0161.1;0,MA0162.1;3.74312e-05,MA0163.1;0.152914,MA0164.1;0.106401,MA0080.2;0.208299,MA0018.2;0.111278,MA0099.2;0.513891,MA0079.2;5.98819e-05,MA0102.2;2.18328,MA0258.1;0.0872645,MA0259.1;0.0365812,MA0442.1;0
}}

Latest revision as of 14:55, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:109958858..109958900,-p@chr11:109958858..109958900
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Mm9::chr11:121349277..121349318,+p5@Tbcd
Mm9::chr14:46840780..46840799,+p@chr14:46840780..46840799
+
Mm9::chr14:46840814..46840827,+p@chr14:46840814..46840827
+
Mm9::chr14:60796888..60796921,-p@chr14:60796888..60796921
-
Mm9::chr14:66759756..66759799,+p1@Chrna2
Mm9::chr15:10153615..10153627,+p10@Prlr
Mm9::chr16:26358205..26358227,-p@chr16:26358205..26358227
-
Mm9::chr16:32010196..32010224,-p@chr16:32010196..32010224
-
Mm9::chr17:28578319..28578332,-p@chr17:28578319..28578332
-
Mm9::chr17:8465391..8465394,-p@chr17:8465391..8465394
-
Mm9::chr19:12699915..12699916,+p@chr19:12699915..12699916
+
Mm9::chr19:37338550..37338603,-p1@4931408D14Rik
Mm9::chr19:38236670..38236680,+p@chr19:38236670..38236680
+
Mm9::chr19:38236709..38236722,+p@chr19:38236709..38236722
+
Mm9::chr1:138558723..138558736,+p@chr1:138558723..138558736
+
Mm9::chr1:72816185..72816201,-p@chr1:72816185..72816201
-
Mm9::chr1:74061226..74061268,-p@chr1:74061226..74061268
-
Mm9::chr1:74292560..74292563,+p@chr1:74292560..74292563
+
Mm9::chr2:131929154..131929182,-p@chr2:131929154..131929182
-
Mm9::chr2:131929190..131929201,-p@chr2:131929190..131929201
-
Mm9::chr2:165225898..165225910,-p1@4833422F24Rik
Mm9::chr2:79209227..79209247,-p@chr2:79209227..79209247
-
Mm9::chr3:10014510..10014513,+p@chr3:10014510..10014513
+
Mm9::chr6:108422530..108422543,-p@chr6:108422530..108422543
-
Mm9::chr6:90569345..90569357,+p10@Slc41a3
Mm9::chr6:90569359..90569376,+p5@Slc41a3
Mm9::chr7:149847748..149847762,-p10@Igf2
Mm9::chr7:149847763..149847785,-p4@Igf2
Mm9::chr8:10865998..10866082,-p@chr8:10865998..10866082
-
Mm9::chr8:121948230..121948243,-p@chr8:121948230..121948243
-
Mm9::chr8:121948244..121948262,-p@chr8:121948244..121948262
-
Mm9::chr8:121948361..121948381,+p@chr8:121948361..121948381
+
Mm9::chr9:110246575..110246581,+p10@Scap
Mm9::chr9:110895276..110895298,+p@chr9:110895276..110895298
+
Mm9::chr9:110895319..110895324,+p@chr9:110895319..110895324
+
Mm9::chr9:70782615..70782654,-p2@Lipc


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver1.49e-1422
epithelial sac1.49e-1422
digestive gland1.49e-1422
epithelium of foregut-midgut junction1.49e-1422
anatomical boundary1.49e-1422
hepatobiliary system1.49e-1422
foregut-midgut junction1.49e-1422
hepatic diverticulum1.49e-1422
liver primordium1.49e-1422
septum transversum1.49e-1422
liver bud1.49e-1422
digestive tract diverticulum1.00e-1323
sac1.00e-1323
exocrine gland2.84e-1225
exocrine system2.84e-1225
abdomen element6.39e-0849
abdominal segment element6.39e-0849
abdominal segment of trunk6.39e-0849
abdomen6.39e-0849
trunk mesenchyme2.38e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.18.39735e-06
MA0004.10.449155
MA0006.10.061309
MA0007.10.41953
MA0009.10.311311
MA0014.12.93054e-05
MA0017.12.70476
MA0019.10.184364
MA0024.10.2788
MA0025.10.500436
MA0027.11.85482
MA0028.10.0143967
MA0029.10.727667
MA0030.11.35623
MA0031.11.9558
MA0038.10.120029
MA0040.12.35282
MA0041.17.63615
MA0042.12.6623
MA0043.11.00484
MA0046.11.61204
MA0048.10.000319981
MA0050.10.24732
MA0051.10.786554
MA0052.10.326972
MA0055.10.0509499
MA0056.10
MA0057.10.114384
MA0058.10.508096
MA0059.10.859481
MA0060.10.00416002
MA0061.10.0355727
MA0063.10
MA0066.10.114312
MA0067.10.597474
MA0068.10.328696
MA0069.11.5711
MA0070.10.856383
MA0071.10.900308
MA0072.10.841934
MA0073.10.00111687
MA0074.10.319476
MA0076.10.0915916
MA0077.10.805245
MA0078.11.39511
MA0081.10.143839
MA0083.10.386189
MA0084.10.899737
MA0087.10.351973
MA0088.10.00235459
MA0089.10
MA0090.10.168659
MA0091.10.475676
MA0092.10.383142
MA0093.10.36952
MA0095.10
MA0098.10
MA0100.10.0911141
MA0101.10.309403
MA0103.10.414978
MA0105.10.00663914
MA0106.10.147433
MA0107.10.0180044
MA0108.20.198959
MA0109.10
MA0111.10.409621
MA0113.10.816469
MA0114.13.34384
MA0115.13.66844
MA0116.10.012748
MA0117.10.363331
MA0119.11.74054
MA0122.10.379112
MA0124.10.550539
MA0125.10.486591
MA0130.10
MA0131.10.181514
MA0132.10
MA0133.10
MA0135.11.88059
MA0136.10.106221
MA0139.10.0494054
MA0140.10.304632
MA0141.11.50435
MA0142.10.232577
MA0143.10.140685
MA0144.10.221379
MA0145.10.0278447
MA0146.10.00311569
MA0147.10.245652
MA0148.12.92845
MA0149.10.0337842
MA0062.20.00742176
MA0035.20.641981
MA0039.24.231e-05
MA0138.20.17657
MA0002.20.582231
MA0137.20.45752
MA0104.20.0623185
MA0047.22.4592
MA0112.20.111037
MA0065.22.72939
MA0150.10.0502988
MA0151.10
MA0152.10.380639
MA0153.11.92705
MA0154.10.134265
MA0155.10.147009
MA0156.10.0909568
MA0157.11.78621
MA0158.10
MA0159.10.266456
MA0160.10.488147
MA0161.10
MA0162.13.74312e-05
MA0163.10.152914
MA0164.10.106401
MA0080.20.208299
MA0018.20.111278
MA0099.20.513891
MA0079.25.98819e-05
MA0102.22.18328
MA0258.10.0872645
MA0259.10.0365812
MA0442.10
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