MCL coexpression mm9:391: Difference between revisions
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{{MCL_coexpression_mm9| | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.00679091713542905,0.00684231749379747,0,0,0,0,0,0,0,0,0.00361251192045653,0,0,0,0.00657188992605011,0,0,0,0,0,0.0205501525016249,0.00216382384709683,0.00530441523504258,0,0,0,0,0,0,0,0,0,0,0,0.00580015377224426,0,0,0,0,0,0,0,0,0,0,0,0,0.00827208715280268,0,0,0,0,0,0,0,0,0.00575900415775295,0,0,0,0,0.00667000785482353,0,0,0,0,0,0,0,0,0.00436326263840903,0.00574332035215937,0.0045615212148699,0.00528239893508769,0.00418413864108304,0,0.0169715199229038,0.0101594925113111,0.0122469873987718,0,0.00400198142716447,0,0.0112560714505222,0.0172350664411643,0.0065003481779136,0.00590237852815426,0,0.0101527033176463,0.00634786893607768,0.00166522685462008,0.0104517149791337,0,0,0,0,0.00846192768190284,0.110913596458892,0,0,0,0,0,0,0,0,0,0,0.00470149521774438,0,0.00316363786373684,0.010465041968767,0.010870389884364,0,0.00320898199756737,0.0124513345257387,0.00541155545788577,0.0100983526172541,0.00617405237568839,0,0,0,0,0,0,0.00434667033273192,0,0,0,0,0.00848314960773032,0.00861098647653721,0.00811658760008564,0.0036633212272018,0.00520480211937105,0.0190183770922339,0.00986013279865442,0.0359016404564373,0.00536037150464177,0.0318733167585765,0.01866408409689,0.0108791067030403,0.00473002866384775,0.00987227795915163,0.0107833976573607,0.00700647632178804,0.00275541480053134,0.00409462072788629,0.0183891201123306,0,0,0,0,0,0,0,0.64589592117052,0,0,0,0.00430276433436306,0.0169927542553127,0.0037844656941357,0,0,0.00327928010614406,0,0.0134965233722898,0.0100972479195136,0,0.00347449776540025,0.00497596037923124,0,0,0,0.0192044719697781,0,0,0,0.0480188093188515,0.0190935009323566,0.00277068184410524,0.00839895862410762,0.00841023858448374,0.00398048929432009,0,0,0,0.011804396982476,0.00407130807373728,0,0,0,0.00396977599047028,0.002472740159301,0,0,0,0.00996999904512981,0.00140157327962018,0,0.00333330954898783,0.00265964858637351,0.0207814640809251,0.00927611692605274,0,0.0117846075529026,0.0077841525707211,0.0124431168390391,0.0160541835164624,0.0142228139321813,0.0068691227125966,0.00554530348735158,0,0,0.00620770027931979,0.00514763599911774,0,0,0,0.0221874379651377,0.00345087556963319,0,0,0,0,0,0,0,0.0101453385943683,0.0034685252276642,0,0.00308801870653017,0,0,0,0,0.0127301137329073,0.00253344578894241,0,0.0159563647377655,0,0,0.00445934697673567,0.00489791417324164,0,0,0,0.0105208134050508,0,0.0127377306704722,0.181741045572827,0.141709093636716,0.160544439930378,0.0169882363760332,0,0,0,0.00394934641977548,0,0,0.0105082604149387,0.0195776414124882,0.00696941888238947,0,0,0,0.0160860431071562,0.0113533408655304,0.00525938023993402,0.00887781477858332,0.00373168345068294,0.00697346696174721,0.00696397626059034,0.0121507804346855,0.01361446357422,0.0168574963211704,0,0.0191896274153523,0,0.00133863449325974,0.00515521818102286,0.0235798945848153,0,0,0.00360573712440737,0,0,0,0.00292861339985337,0.00470913096740372,0.0035883081611342,0,0.00295887217247661,0,0.00335639789848897,0,0.00681469703468827,0.00433989564286859,0,0,0.00181523507676495,0,0,0,0.0612812212792256,0.922095603543518,1.06985548740016,0.328279622184284,0.246422609249564,0.153904351770377,0.0915137932499689,0.143784638756693,0.147251459375758,0.085920970020907,0.0599482876428344,0.0389916621961234,0.00421928505819906,0.00854095606216899,0.00837600192655108,0.0177556488078549,0.0283593631316029,0.0220753083997552,0.0202147743275205,0.0396391641003657,0.0255443001272555,0.0188297778675878,0.0610969332465436,0.0355267276229663,0.0275612746844462,0,0.0505122065543544,0.00785525754617785,0.00709473030020962,0.00746747527620063,0.00393159728403139,0.0148225215510288,0,0,0.0102339721916413,0.00865524160545826,0.0103526249286494,0.00362490546071943,0,0.0128618202211859,0.0117905602736977,0.0169962311854966,0.0147467257409604,0.0190740202291553,0.00451425384816783,0,0.0108091712998809,0.00497412700791935,0,0,0,0,0.0127238164203635,0.0144998112479171,0.00516406138744779,0.0152160172656132,0.00409210366811689,0.00969006968538584,0.00631506396732093,0,0.00751881748270874,0,0,0.0094166415031221,0,0.00746863077404468,0.00488808603187332,0.00893472421068021,0.0102791425000945,0.00742641038692381,0.0109664841726214,0,0.0113136949458373,0.0203623666786324,0.0051250958425814,0.00840531945883969,0.00784116849721284,0.00658507737608738,0.00403191817953873,0.00926218729439853,0.00480479417250237,0.0170693724769111,0,0.00835363588714226,0.0134750932921083|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554785308251162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978748387393722,1.00433070349492,0.142671721075526,0.0997909775761048,0,0.0481920468563092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0403878614760544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0048863;stem cell differentiation;2.7667001875512e-06;18999,18119,71950!GO:0048864;stem cell development;0.000451023744568524;18999,18119!GO:0019827;stem cell maintenance;0.000451023744568524;18999,18119!GO:0042074;cell migration involved in gastrulation;0.000630972040384902;13590,18119!GO:0045596;negative regulation of cell differentiation;0.000948523766910004;18999,18119,71950!GO:0045120;pronucleus;0.00124038586237459;21432,73708!GO:0051093;negative regulation of developmental process;0.00124038586237459;18999,18119,71950!GO:0008083;growth factor activity;0.00304482699284934;320202,13590,18119!GO:0045595;regulation of cell differentiation;0.00304482699284934;18999,18119,71950!GO:0009790;embryonic development;0.00342597435615527;13590,73708,18119,71950!GO:0005125;cytokine activity;0.00670187390332782;320202,13590,18119!GO:0007389;pattern specification process;0.00788911411822714;13590,18119,71950!GO:0050793;regulation of developmental process;0.00788911411822714;18999,18119,71950!GO:0001714;endodermal cell fate specification;0.00788911411822714;71950!GO:0042664;negative regulation of endodermal cell fate specification;0.00788911411822714;71950!GO:0002085;repression of premature neural plate formation;0.00788911411822714;18119!GO:0030718;germ-line stem cell maintenance;0.00788911411822714;18999!GO:0042663;regulation of endodermal cell fate specification;0.00788911411822714;71950!GO:0004577;N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity;0.00788911411822714;67574!GO:0007369;gastrulation;0.00835616358503614;13590,18119!GO:0032502;developmental process;0.00842780921854488;378430,320202,13590,73708,18999,18119,71950!GO:0032501;multicellular organismal process;0.0105943426963285;18796,13590,320202,378430,73708,12877,71950,18119!GO:0007275;multicellular organismal development;0.010703428565192;378430,320202,13590,73708,18119,71950!GO:0001711;endodermal cell fate commitment;0.010703428565192;71950!GO:0042659;regulation of cell fate specification;0.010703428565192;71950!GO:0010453;regulation of cell fate commitment;0.010703428565192;71950!GO:0009996;negative regulation of cell fate specification;0.010703428565192;71950!GO:0010454;negative regulation of cell fate commitment;0.010703428565192;71950!GO:0048523;negative regulation of cellular process;0.0116737389182239;13590,18999,18119,71950!GO:0009952;anterior/posterior pattern formation;0.012727101419578;13590,18119!GO:0045165;cell fate commitment;0.0138066231261762;18119,71950!GO:0048519;negative regulation of biological process;0.0138066231261762;13590,18999,18119,71950!GO:0030259;lipid glycosylation;0.0176185544395488;67574!GO:0001940;male pronucleus;0.0176185544395488;73708!GO:0006417;regulation of translation;0.0196990255106665;378430,12877!GO:0048505;regulation of timing of cell differentiation;0.0196990255106665;18119!GO:0040034;regulation of development, heterochronic;0.0196990255106665;18119!GO:0001939;female pronucleus;0.0196990255106665;73708!GO:0031326;regulation of cellular biosynthetic process;0.0211316487213253;378430,12877!GO:0005160;transforming growth factor beta receptor binding;0.0218905462024405;320202!GO:0040016;embryonic cleavage;0.0218905462024405;73708!GO:0003002;regionalization;0.0218905462024405;13590,18119!GO:0009889;regulation of biosynthetic process;0.0237110789038901;378430,12877!GO:0007130;synaptonemal complex assembly;0.0238035645283384;12877!GO:0065007;biological regulation;0.0271473139901545;378430,320202,13590,12877,18999,18119,71950!GO:0017145;stem cell division;0.0288307489318434;71950!GO:0005102;receptor binding;0.0288307489318434;320202,13590,18119!GO:0009948;anterior/posterior axis specification;0.0342471769361994;13590!GO:0007129;synapsis;0.0365870750233847;12877!GO:0001947;heart looping;0.0406109439809507;18119!GO:0048168;regulation of neuronal synaptic plasticity;0.0406109439809507;12877!GO:0050794;regulation of cellular process;0.0406109439809507;378430,13590,12877,18999,18119,71950!GO:0051246;regulation of protein metabolic process;0.0413016207316092;378430,12877!GO:0051301;cell division;0.0419009446029893;73708,71950!GO:0009798;axis specification;0.0461078486046946;13590!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000991!3.01e-25!18;UBERON:0005564!3.01e-25!18;UBERON:0000473!1.18e-22!14;UBERON:0003135!3.54e-21!15;UBERON:0003101!6.98e-20!16;UBERON:0000079!6.98e-20!16;UBERON:0003133!4.99e-19!24;UBERON:0004176!9.72e-19!17;UBERON:0009196!9.72e-19!17;UBERON:0009117!9.72e-19!17;UBERON:0005156!1.37e-17!26;UBERON:0000990!1.37e-17!26;UBERON:0002323!1.93e-12!37;UBERON:0004458!1.93e-12!37;UBERON:0003886!4.04e-12!38;UBERON:0002553!8.16e-12!39;UBERON:0000464!3.90e-08!57|tfbs_overrepresentation_for_novel_motifs=0.149902,0.201919,0.133309,1.01095,0.0709145,0.551286,0.254787,1.28332,0.596432,0.0396053,0.221763,1.27358,0.0322096,0.73029,0.271754,0,0.42315,0.0671461,0.514215,0.245228,0.358501,0.685027,0.263535,0.527336,0.138033,0.285776,0.486875,0.202945,0.0941661,0.884629,0.562931,0.512187,0.0660956,0.424507,0.970517,0.0928537,0.0618293,0.242872,0.194199,0.364515,0.0689912,0.196576,0.249206,0.578047,0.459119,0.170437,0.355451,0.214351,0.32395,0.317394,0.408111,0.307229,0.167462,0.641205,0.657376,0.269785,0.100694,0.23598,1.48719,0.268198,0.494318,0.314847,0.354886,0.398468,0.278491,1.10617,0.785371,1.12243,0.490165,0.979213,0.386078,0.0340869,0.0244677,0.6886,0.710851,0.018158,1.40751,0.914794,0.479091,0.113666,0.138314,0.438213,0.31368,0.123739,0.582029,0.0422746,0.020087,0.0686434,0.359539,1.2816,0.851763,0.586575,0.523661,0.256716,0.189143,0.380698,0.555715,0.526183,0.355664,0.498538,0.483457,0.511936,0.625103,0.408622,0.407717,0.196264,0.459578,0.607107,0.116526,0.112248,0.44617,0.626748,0.366686,0.225582,0.858505,0.516755,0.0274913,0.180644,0.424276,0.820725,0.693645,0.380657,0.287218,0.345253,0.910454,0.482363,0.261058,0.517583,0.783932,1.40627,0.609469,0.173056,0.75595,0.280468,0.879201,0.277969,0.471259,0.197578,0.832159,1.64606,1.25025,0.789841,0.296788,0.521565,0.402166,0.196898,0.358053,1.60668,0.156941,0.250986,0.360841,0.0560078,0.642658,0.174823,0.765783,0.718834,0.829911,1.01394,0.453591,0.155206,0.841238,0.581248,0.482758,0.143905,0.39934,0.273933,0.220881,0.244407,0.0148726|tfbs_overrepresentation_jaspar=MA0003.1;0.263084,MA0004.1;0.527785,MA0006.1;0.265566,MA0007.1;0.168178,MA0009.1;0.535932,MA0014.1;1.59389,MA0017.1;2.13316,MA0019.1;0.982191,MA0024.1;0.496718,MA0025.1;0.751694,MA0027.1;2.14278,MA0028.1;0.0821841,MA0029.1;0.477444,MA0030.1;0.483253,MA0031.1;0.451927,MA0038.1;1.42188,MA0040.1;0.547233,MA0041.1;0.404719,MA0042.1;0.384176,MA0043.1;0.624178,MA0046.1;0.568473,MA0048.1;0.0108253,MA0050.1;0.205672,MA0051.1;0.2928,MA0052.1;0.554531,MA0055.1;0.018284,MA0056.1;0,MA0057.1;0.454273,MA0058.1;0.117003,MA0059.1;0.124358,MA0060.1;0.0417645,MA0061.1;0.0537092,MA0063.1;0,MA0066.1;0.759694,MA0067.1;0.857286,MA0068.1;4.91593,MA0069.1;0.554839,MA0070.1;0.54606,MA0071.1;0.20507,MA0072.1;0.538403,MA0073.1;20.239,MA0074.1;1.28764,MA0076.1;0.101055,MA0077.1;0.518913,MA0078.1;0.319336,MA0081.1;0.429201,MA0083.1;0.623446,MA0084.1;1.1752,MA0087.1;0.583879,MA0088.1;1.29308,MA0089.1;0,MA0090.1;0.471234,MA0091.1;1.65596,MA0092.1;2.11049,MA0093.1;0.609251,MA0095.1;0,MA0098.1;0,MA0100.1;0.2406,MA0101.1;0.12981,MA0103.1;0.657254,MA0105.1;0.213264,MA0106.1;0.325663,MA0107.1;0.310214,MA0108.2;1.02466,MA0109.1;0,MA0111.1;0.494436,MA0113.1;0.302851,MA0114.1;1.62985,MA0115.1;2.57401,MA0116.1;3.9252,MA0117.1;0.597086,MA0119.1;0.130171,MA0122.1;0.615314,MA0124.1;0.80652,MA0125.1;0.736412,MA0130.1;0,MA0131.1;0.372683,MA0132.1;0,MA0133.1;0,MA0135.1;0.657882,MA0136.1;0.731186,MA0139.1;0.299978,MA0140.1;0.240513,MA0141.1;1.16831,MA0142.1;0.439269,MA0143.1;0.847878,MA0144.1;0.19926,MA0145.1;0.0269479,MA0146.1;0.104944,MA0147.1;0.0593437,MA0148.1;0.555053,MA0149.1;1.33466,MA0062.2;0.0201154,MA0035.2;0.244063,MA0039.2;4.43285,MA0138.2;0.366012,MA0002.2;0.886864,MA0137.2;0.701055,MA0104.2;0.145321,MA0047.2;0.285109,MA0112.2;0.326529,MA0065.2;2.16879,MA0150.1;0.168102,MA0151.1;0,MA0152.1;0.285194,MA0153.1;0.67335,MA0154.1;5.67232,MA0155.1;0.601417,MA0156.1;0.676622,MA0157.1;0.411541,MA0158.1;0,MA0159.1;0.0638985,MA0160.1;2.38263,MA0161.1;0,MA0162.1;1.18735,MA0163.1;2.69172,MA0164.1;1.34551,MA0080.2;0.643629,MA0018.2;0.272436,MA0099.2;0.360735,MA0079.2;9.83678,MA0102.2;1.22663,MA0258.1;0.401444,MA0259.1;0.201267,MA0442.1;0}} 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Latest revision as of 15:13, 17 September 2013
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr10:60881031..60881037,+ | p1@Nodal |
| Mm9::chr12:106460922..106460932,- | p1@Tcl1 |
| Mm9::chr12:106460944..106460955,- | p2@Tcl1 |
| Mm9::chr16:48281766..48281778,+ | p@chr16:48281766..48281778 + |
| Mm9::chr17:35642973..35642994,+ | p2@Pou5f1 |
| Mm9::chr17:35642997..35643014,+ | p1@Pou5f1 |
| Mm9::chr1:182823238..182823239,+ | p1@Lefty2 |
| Mm9::chr1:182865168..182865172,+ | p2@Lefty1 |
| Mm9::chr2:118541186..118541194,- | p@chr2:118541186..118541194 - |
| Mm9::chr2:165635739..165635747,+ | p@chr2:165635739..165635747 + |
| Mm9::chr2:25621051..25621055,+ | p1@Lcn3 |
| Mm9::chr6:122576436..122576438,+ | p1@Dppa3 |
| Mm9::chr6:122657610..122657626,+ | p1@Nanog p1@Nanogpd |
| Mm9::chr7:19572867..19572873,+ | p1@Nanos2 |
| Mm9::chr7:88599637..88599650,- | p4@Cpeb1 |
| Mm9::chr9:78215959..78215971,- | p1@Dppa5a |
| Mm9::chr9:78215974..78215984,- | p2@Dppa5a |
| Mm9::chr9:78215998..78216003,- | p3@Dppa5a |
| Mm9::chrX:140770330..140770374,+ | p5@Alg13 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0048863 | stem cell differentiation | 2.7667001875512e-06 |
| GO:0048864 | stem cell development | 0.000451023744568524 |
| GO:0019827 | stem cell maintenance | 0.000451023744568524 |
| GO:0042074 | cell migration involved in gastrulation | 0.000630972040384902 |
| GO:0045596 | negative regulation of cell differentiation | 0.000948523766910004 |
| GO:0045120 | pronucleus | 0.00124038586237459 |
| GO:0051093 | negative regulation of developmental process | 0.00124038586237459 |
| GO:0008083 | growth factor activity | 0.00304482699284934 |
| GO:0045595 | regulation of cell differentiation | 0.00304482699284934 |
| GO:0009790 | embryonic development | 0.00342597435615527 |
| GO:0005125 | cytokine activity | 0.00670187390332782 |
| GO:0007389 | pattern specification process | 0.00788911411822714 |
| GO:0050793 | regulation of developmental process | 0.00788911411822714 |
| GO:0001714 | endodermal cell fate specification | 0.00788911411822714 |
| GO:0042664 | negative regulation of endodermal cell fate specification | 0.00788911411822714 |
| GO:0002085 | repression of premature neural plate formation | 0.00788911411822714 |
| GO:0030718 | germ-line stem cell maintenance | 0.00788911411822714 |
| GO:0042663 | regulation of endodermal cell fate specification | 0.00788911411822714 |
| GO:0004577 | N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity | 0.00788911411822714 |
| GO:0007369 | gastrulation | 0.00835616358503614 |
| GO:0032502 | developmental process | 0.00842780921854488 |
| GO:0032501 | multicellular organismal process | 0.0105943426963285 |
| GO:0007275 | multicellular organismal development | 0.010703428565192 |
| GO:0001711 | endodermal cell fate commitment | 0.010703428565192 |
| GO:0042659 | regulation of cell fate specification | 0.010703428565192 |
| GO:0010453 | regulation of cell fate commitment | 0.010703428565192 |
| GO:0009996 | negative regulation of cell fate specification | 0.010703428565192 |
| GO:0010454 | negative regulation of cell fate commitment | 0.010703428565192 |
| GO:0048523 | negative regulation of cellular process | 0.0116737389182239 |
| GO:0009952 | anterior/posterior pattern formation | 0.012727101419578 |
| GO:0045165 | cell fate commitment | 0.0138066231261762 |
| GO:0048519 | negative regulation of biological process | 0.0138066231261762 |
| GO:0030259 | lipid glycosylation | 0.0176185544395488 |
| GO:0001940 | male pronucleus | 0.0176185544395488 |
| GO:0006417 | regulation of translation | 0.0196990255106665 |
| GO:0048505 | regulation of timing of cell differentiation | 0.0196990255106665 |
| GO:0040034 | regulation of development, heterochronic | 0.0196990255106665 |
| GO:0001939 | female pronucleus | 0.0196990255106665 |
| GO:0031326 | regulation of cellular biosynthetic process | 0.0211316487213253 |
| GO:0005160 | transforming growth factor beta receptor binding | 0.0218905462024405 |
| GO:0040016 | embryonic cleavage | 0.0218905462024405 |
| GO:0003002 | regionalization | 0.0218905462024405 |
| GO:0009889 | regulation of biosynthetic process | 0.0237110789038901 |
| GO:0007130 | synaptonemal complex assembly | 0.0238035645283384 |
| GO:0065007 | biological regulation | 0.0271473139901545 |
| GO:0017145 | stem cell division | 0.0288307489318434 |
| GO:0005102 | receptor binding | 0.0288307489318434 |
| GO:0009948 | anterior/posterior axis specification | 0.0342471769361994 |
| GO:0007129 | synapsis | 0.0365870750233847 |
| GO:0001947 | heart looping | 0.0406109439809507 |
| GO:0048168 | regulation of neuronal synaptic plasticity | 0.0406109439809507 |
| GO:0050794 | regulation of cellular process | 0.0406109439809507 |
| GO:0051246 | regulation of protein metabolic process | 0.0413016207316092 |
| GO:0051301 | cell division | 0.0419009446029893 |
| GO:0009798 | axis specification | 0.0461078486046946 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| gonad | 3.01e-25 | 18 |
| gonad primordium | 3.01e-25 | 18 |
| testis | 1.18e-22 | 14 |
| male reproductive organ | 3.54e-21 | 15 |
| male organism | 6.98e-20 | 16 |
| male reproductive system | 6.98e-20 | 16 |
| reproductive organ | 4.99e-19 | 24 |
| external genitalia | 9.72e-19 | 17 |
| indifferent external genitalia | 9.72e-19 | 17 |
| indifferent gonad | 9.72e-19 | 17 |
| reproductive structure | 1.37e-17 | 26 |
| reproductive system | 1.37e-17 | 26 |
| body cavity | 1.93e-12 | 37 |
| body cavity or lining | 1.93e-12 | 37 |
| body cavity precursor | 4.04e-12 | 38 |
| anatomical cavity | 8.16e-12 | 39 |
| anatomical space | 3.90e-08 | 57 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.263084 |
| MA0004.1 | 0.527785 |
| MA0006.1 | 0.265566 |
| MA0007.1 | 0.168178 |
| MA0009.1 | 0.535932 |
| MA0014.1 | 1.59389 |
| MA0017.1 | 2.13316 |
| MA0019.1 | 0.982191 |
| MA0024.1 | 0.496718 |
| MA0025.1 | 0.751694 |
| MA0027.1 | 2.14278 |
| MA0028.1 | 0.0821841 |
| MA0029.1 | 0.477444 |
| MA0030.1 | 0.483253 |
| MA0031.1 | 0.451927 |
| MA0038.1 | 1.42188 |
| MA0040.1 | 0.547233 |
| MA0041.1 | 0.404719 |
| MA0042.1 | 0.384176 |
| MA0043.1 | 0.624178 |
| MA0046.1 | 0.568473 |
| MA0048.1 | 0.0108253 |
| MA0050.1 | 0.205672 |
| MA0051.1 | 0.2928 |
| MA0052.1 | 0.554531 |
| MA0055.1 | 0.018284 |
| MA0056.1 | 0 |
| MA0057.1 | 0.454273 |
| MA0058.1 | 0.117003 |
| MA0059.1 | 0.124358 |
| MA0060.1 | 0.0417645 |
| MA0061.1 | 0.0537092 |
| MA0063.1 | 0 |
| MA0066.1 | 0.759694 |
| MA0067.1 | 0.857286 |
| MA0068.1 | 4.91593 |
| MA0069.1 | 0.554839 |
| MA0070.1 | 0.54606 |
| MA0071.1 | 0.20507 |
| MA0072.1 | 0.538403 |
| MA0073.1 | 20.239 |
| MA0074.1 | 1.28764 |
| MA0076.1 | 0.101055 |
| MA0077.1 | 0.518913 |
| MA0078.1 | 0.319336 |
| MA0081.1 | 0.429201 |
| MA0083.1 | 0.623446 |
| MA0084.1 | 1.1752 |
| MA0087.1 | 0.583879 |
| MA0088.1 | 1.29308 |
| MA0089.1 | 0 |
| MA0090.1 | 0.471234 |
| MA0091.1 | 1.65596 |
| MA0092.1 | 2.11049 |
| MA0093.1 | 0.609251 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.2406 |
| MA0101.1 | 0.12981 |
| MA0103.1 | 0.657254 |
| MA0105.1 | 0.213264 |
| MA0106.1 | 0.325663 |
| MA0107.1 | 0.310214 |
| MA0108.2 | 1.02466 |
| MA0109.1 | 0 |
| MA0111.1 | 0.494436 |
| MA0113.1 | 0.302851 |
| MA0114.1 | 1.62985 |
| MA0115.1 | 2.57401 |
| MA0116.1 | 3.9252 |
| MA0117.1 | 0.597086 |
| MA0119.1 | 0.130171 |
| MA0122.1 | 0.615314 |
| MA0124.1 | 0.80652 |
| MA0125.1 | 0.736412 |
| MA0130.1 | 0 |
| MA0131.1 | 0.372683 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 0.657882 |
| MA0136.1 | 0.731186 |
| MA0139.1 | 0.299978 |
| MA0140.1 | 0.240513 |
| MA0141.1 | 1.16831 |
| MA0142.1 | 0.439269 |
| MA0143.1 | 0.847878 |
| MA0144.1 | 0.19926 |
| MA0145.1 | 0.0269479 |
| MA0146.1 | 0.104944 |
| MA0147.1 | 0.0593437 |
| MA0148.1 | 0.555053 |
| MA0149.1 | 1.33466 |
| MA0062.2 | 0.0201154 |
| MA0035.2 | 0.244063 |
| MA0039.2 | 4.43285 |
| MA0138.2 | 0.366012 |
| MA0002.2 | 0.886864 |
| MA0137.2 | 0.701055 |
| MA0104.2 | 0.145321 |
| MA0047.2 | 0.285109 |
| MA0112.2 | 0.326529 |
| MA0065.2 | 2.16879 |
| MA0150.1 | 0.168102 |
| MA0151.1 | 0 |
| MA0152.1 | 0.285194 |
| MA0153.1 | 0.67335 |
| MA0154.1 | 5.67232 |
| MA0155.1 | 0.601417 |
| MA0156.1 | 0.676622 |
| MA0157.1 | 0.411541 |
| MA0158.1 | 0 |
| MA0159.1 | 0.0638985 |
| MA0160.1 | 2.38263 |
| MA0161.1 | 0 |
| MA0162.1 | 1.18735 |
| MA0163.1 | 2.69172 |
| MA0164.1 | 1.34551 |
| MA0080.2 | 0.643629 |
| MA0018.2 | 0.272436 |
| MA0099.2 | 0.360735 |
| MA0079.2 | 9.83678 |
| MA0102.2 | 1.22663 |
| MA0258.1 | 0.401444 |
| MA0259.1 | 0.201267 |
| MA0442.1 | 0 |
