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MCL coexpression mm9:451: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!7.02e-22!15;UBERON:0001242!5.18e-19!13;UBERON:0000060!5.18e-19!13;UBERON:0001262!5.18e-19!13;UBERON:0004786!5.18e-19!13;UBERON:0003350!6.53e-17!9;UBERON:0004808!6.53e-17!9;UBERON:0001277!6.53e-17!9;UBERON:0000160!2.55e-16!31;UBERON:0000485!4.64e-16!11;UBERON:0004923!4.26e-14!24;UBERON:0005409!5.44e-10!47
|tfbs_overrepresentation_for_novel_motifs=0.556227,0.512418,0.510781,0.221468,0.667417,0.656813,0.305009,0.186307,0.198932,0.0744694,0.742008,1.45608,0.0498401,0.315149,0.351364,0,0.482714,0.312712,0.379612,0.359873,0.146132,0.424536,0.3144,0.663197,0.176763,0.338177,0.359615,0.694761,0.126301,0.78695,0.237846,0.574932,0.309242,0.573169,0.714678,0.443176,0.614421,1.44539,0.55598,0.221026,0.318773,0.678575,0.381086,0.71889,0.950724,0.213039,0.41191,0.26128,0.725187,0.128181,0.467043,0.360991,0.247305,0.7073,0.723811,0.321095,0.417292,0.777175,0.338309,0.319396,0.556492,0.369066,0.469805,0.456979,0.880059,0.493315,0.854035,1.19441,0.552202,1.05011,0.478436,0.754696,0.0453067,0.755651,0.322986,0.867289,0.572907,0.401969,0.540754,0.455238,0.195767,0.498379,0.36783,0.400248,0.646739,0.658811,0.0426811,1.14756,0.416206,1.35441,0.92132,0.6514,0.586758,0.683646,0.073664,0.0648185,0.409982,0.589355,0.412133,0.681961,0.295113,0.574674,0.690844,0.467576,0.466632,0.241519,0.52055,0.716149,0.463457,0.451142,0.543885,0.692526,0.457145,0.751496,0.928143,0.315992,0.606744,0.637592,0.483885,0.289365,0.760792,0.438354,0.339713,0.40118,0.980682,0.544138,0.311744,0.580495,0.852575,1.14378,0.67485,0.215942,0.824167,0.884769,0.949083,2.98564,0.196278,0.681128,0.901468,1.71991,1.32292,0.85857,0.349901,0.584599,0.46084,0.679396,1.06559,1.68046,0.575158,0.327798,0.267549,0.0990985,0.708784,0.514688,0.331737,0.786435,0.361851,0.370626,0.188342,0.570508,0.910663,0.645939,0.544546,0.183389,0.457889,0.325532,1.02562,0.293837,0.562708
}}

Latest revision as of 15:19, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126415498..126415501,-p@chr10:126415498..126415501
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Mm9::chr10:80336986..80336992,+p@chr10:80336986..80336992
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Mm9::chr11:87800136..87800140,+p@chr11:87800136..87800140
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Mm9::chr12:53547871..53547894,+p@chr12:53547871..53547894
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Mm9::chr2:180976660..180976667,-p3@BC006779
Mm9::chr2:29989181..29989210,-p@chr2:29989181..29989210
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Mm9::chr3:95898220..95898255,-p@chr3:95898220..95898255
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Mm9::chr4:134478554..134478559,+p@chr4:134478554..134478559
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Mm9::chr4:154975523..154975552,+p3@Slc35e2
Mm9::chr5:135465906..135465912,+p@chr5:135465906..135465912
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Mm9::chr5:135484679..135484700,-p@chr5:135484679..135484700
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Mm9::chr5:31210307..31210328,+p@chr5:31210307..31210328
+
Mm9::chr7:20335303..20335317,+p@chr7:20335303..20335317
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Mm9::chr8:3221171..3221187,+p@chr8:3221171..3221187
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Mm9::chr8:73222425..73222444,+p2@Jund
Mm9::chrX:96331285..96331289,-p@chrX:96331285..96331289
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.164454
MA0004.10.631712
MA0006.10.105852
MA0007.11.13959
MA0009.10.599391
MA0014.10.14854
MA0017.11.26447
MA0019.10.434009
MA0024.10.558971
MA0025.14.57581
MA0027.12.21717
MA0028.10.360944
MA0029.10.53905
MA0030.10.545058
MA0031.10.512616
MA0038.10.33811
MA0040.10.611015
MA0041.10.166538
MA0042.10.15744
MA0043.12.77584
MA0046.11.53
MA0048.10.219669
MA0050.10.251816
MA0051.10.345658
MA0052.10.618515
MA0055.10.0964477
MA0056.10
MA0057.10.381022
MA0058.10.464825
MA0059.10.161227
MA0060.10.838431
MA0061.10.267107
MA0063.10
MA0066.10.328887
MA0067.10.92691
MA0068.10.965504
MA0069.10.618831
MA0070.10.609808
MA0071.11.29438
MA0072.10.601934
MA0073.10.343423
MA0074.10.8099
MA0076.10.828482
MA0077.10.581866
MA0078.10.37382
MA0081.10.525479
MA0083.10.68915
MA0084.11.24749
MA0087.10.648637
MA0088.10.437739
MA0089.10
MA0090.10.570974
MA0091.10.655274
MA0092.10.571528
MA0093.10.752955
MA0095.10
MA0098.10
MA0100.10.289731
MA0101.10.501038
MA0103.10.128989
MA0105.10.303578
MA0106.10.380511
MA0107.10.394565
MA0108.20.454274
MA0109.10
MA0111.10.206727
MA0113.10.356344
MA0114.10.947046
MA0115.10.692537
MA0116.10.700593
MA0117.10.662171
MA0119.10.502046
MA0122.10.680832
MA0124.10.875485
MA0125.10.804312
MA0130.10
MA0131.10.43
MA0132.10
MA0133.10
MA0135.11.72047
MA0136.10.315568
MA0139.10.406429
MA0140.10.788302
MA0141.10.860597
MA0142.10.499475
MA0143.10.37032
MA0144.10.0778672
MA0145.10.277688
MA0146.10.673403
MA0147.10.0844713
MA0148.10.23425
MA0149.11.56348
MA0062.20.315856
MA0035.20.293466
MA0039.24.23952
MA0138.20.423003
MA0002.20.185031
MA0137.20.139909
MA0104.20.0556953
MA0047.20.337465
MA0112.20.135501
MA0065.20.7347
MA0150.10.604793
MA0151.10
MA0152.10.337555
MA0153.10.740107
MA0154.11.38057
MA0155.10.824691
MA0156.10.826041
MA0157.10.47062
MA0158.10
MA0159.11.04823
MA0160.10.23657
MA0161.10
MA0162.10.569448
MA0163.10.216701
MA0164.10.315868
MA0080.20.125629
MA0018.20.865591
MA0099.20.417463
MA0079.20.524038
MA0102.21.29919
MA0258.10.24394
MA0259.10.965484
MA0442.10
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