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MCL coexpression mm9:474: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_celltype=CL:0002563!6.19e-11!9;CL:0002251!6.19e-11!9;CL:0002076!1.31e-07!15;CL:0000239!2.62e-07!6;CL:0000677!2.62e-07!6;CL:0000212!2.62e-07!6;CL:0000584!2.62e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!2.40e-29!31;UBERON:0005409!2.83e-29!47;UBERON:0000344!1.72e-17!15;UBERON:0001242!3.33e-15!13;UBERON:0000060!3.33e-15!13;UBERON:0001262!3.33e-15!13;UBERON:0004786!3.33e-15!13;UBERON:0003350!6.19e-11!9;UBERON:0004808!6.19e-11!9;UBERON:0001277!6.19e-11!9;UBERON:0004923!6.06e-09!24;UBERON:0000485!1.93e-08!11;UBERON:0001007!3.70e-08!116;UBERON:0001555!3.70e-08!116;UBERON:0007026!3.70e-08!116;UBERON:0004119!8.35e-08!118;UBERON:0000925!8.35e-08!118;UBERON:0006595!8.35e-08!118;UBERON:0004921!4.37e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.206403,0.236794,0.186933,0.238864,0.110365,0.698129,0.324772,0.210111,0.485477,0.198502,0.288187,0.314655,0.461246,0.335151,0.383709,0,0.505674,0.34341,0.1896,0.670858,0.160516,0.485219,0.334384,0.109412,0.192505,0.35869,0.709203,0.267095,1.37478,1.69423,0.255771,0.598971,0.104128,0.15332,0.770595,0.220414,0.0985485,0.311629,1.01847,0.528335,0.710516,0.259911,0.970463,0.774932,0.2594,0.230148,0.433813,0.279902,0.82083,0.436869,0.48979,0.381972,0.832043,0.732469,1.77173,0.341233,0.452104,0.303999,0.166653,0.339495,0.580338,0.390204,0.516848,0.479581,0.350748,0.516415,0.880067,1.22155,0.576002,1.07689,0.173229,0.823515,0.0113485,0.781142,0.040685,0.606791,0.352807,0.423705,0.564426,0.163487,0.220193,0.521544,0.388944,0.201178,0.671442,0.00202775,0.0027123,2.18944,0.438181,1.38183,0.947651,0.676142,0.610915,0.114049,0.284335,0.0741053,0.0565042,0.613539,0.43404,0.469526,0.667342,0.59871,1.70299,0.490329,0.489372,0.259558,0.543989,0.276621,0.499786,0.161774,0.582521,0.717588,0.493275,0.292444,0.954503,0.346836,0.0693264,0.241826,0.506861,0.096357,0.786314,1.16518,0.360259,0.422901,1.00724,0.567849,0.331666,0.60459,0.8786,0.747079,0.699779,0.233152,0.850049,0.352905,0.975524,0.135562,0.212784,0.722951,0.927716,1.74768,1.35029,0.884624,0.370659,1.4795,0.483498,0.260275,1.11321,1.7082,1.15531,0.359158,0.556427,0.00817433,0.733963,0.56364,0.352111,0.81211,0.382849,0.403733,0.204546,0.212571,0.93695,0.670634,0.568261,0.578474,0.480505,0.345769,0.0978842,0.313326,0.0488031
|tfbs_overrepresentation_jaspar=MA0003.1;0.0773439,MA0004.1;0.239244,MA0006.1;0.118059,MA0007.1;0.227553,MA0009.1;0.623671,MA0014.1;0.10125,MA0017.1;0.420732,MA0019.1;1.15568,MA0024.1;1.42507,MA0025.1;0.845702,MA0027.1;2.24512,MA0028.1;0.12472,MA0029.1;0.562703,MA0030.1;0.568779,MA0031.1;0.535959,MA0038.1;0.358622,MA0040.1;0.635404,MA0041.1;0.18185,MA0042.1;0.172351,MA0043.1;0.71494,MA0046.1;0.657417,MA0048.1;0.763962,MA0050.1;2.09884,MA0051.1;0.366328,MA0052.1;0.642973,MA0055.1;1.0953,MA0056.1;0,MA0057.1;0.226212,MA0058.1;0.167504,MA0059.1;1.00391,MA0060.1;0.249987,MA0061.1;0.615538,MA0063.1;0,MA0066.1;0.921885,MA0067.1;0.953264,MA0068.1;0.0216542,MA0069.1;0.643292,MA0070.1;0.634186,MA0071.1;0.269487,MA0072.1;0.626238,MA0073.1;0.0322174,MA0074.1;0.318792,MA0076.1;0.148159,MA0077.1;1.47371,MA0078.1;1.80761,MA0081.1;0.193203,MA0083.1;0.714187,MA0084.1;1.27474,MA0087.1;0.673355,MA0088.1;0.762401,MA0089.1;0,MA0090.1;0.610307,MA0091.1;2.7868,MA0092.1;0.213012,MA0093.1;0.130107,MA0095.1;0,MA0098.1;0,MA0100.1;0.832335,MA0101.1;0.182791,MA0103.1;0.863534,MA0105.1;1.37942,MA0106.1;1.03774,MA0107.1;0.428571,MA0108.2;0.476838,MA0109.1;0,MA0111.1;0.223614,MA0113.1;0.377232,MA0114.1;0.291992,MA0115.1;0.717599,MA0116.1;0.37608,MA0117.1;0.686999,MA0119.1;1.03177,MA0122.1;0.705806,MA0124.1;0.901619,MA0125.1;0.830088,MA0130.1;0,MA0131.1;0.452196,MA0132.1;0,MA0133.1;0,MA0135.1;0.749615,MA0136.1;0.891604,MA0139.1;1.19638,MA0140.1;0.30902,MA0141.1;0.472769,MA0142.1;0.522654,MA0143.1;0.391481,MA0144.1;0.296781,MA0145.1;0.320696,MA0146.1;0.383608,MA0147.1;0.31605,MA0148.1;1.29776,MA0149.1;0.18682,MA0062.2;0.637421,MA0035.2;0.312946,MA0039.2;0.77885,MA0138.2;0.445088,MA0002.2;0.208749,MA0137.2;0.153989,MA0104.2;0.229221,MA0047.2;1.67925,MA0112.2;0.0599393,MA0065.2;0.321967,MA0150.1;0.227466,MA0151.1;0,MA0152.1;0.9415,MA0153.1;0.765498,MA0154.1;0.10034,MA0155.1;0.369691,MA0156.1;1.42296,MA0157.1;0.493416,MA0158.1;0,MA0159.1;1.65594,MA0160.1;0.254455,MA0161.1;0,MA0162.1;0.0342836,MA0163.1;0.0738452,MA0164.1;0.335886,MA0080.2;1.97848,MA0018.2;0.344133,MA0099.2;0.439458,MA0079.2;0.037307,MA0102.2;1.32652,MA0258.1;0.271229,MA0259.1;0.299239,MA0442.1;0
}}

Latest revision as of 15:22, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126604039..126604059,-p@chr10:126604039..126604059
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Mm9::chr11:67735872..67735889,+p1@ENSMUST00000068548
Mm9::chr11:70568658..70568675,-p1@ENSMUST00000127333
p1@uc007jwn.1
Mm9::chr14:35355146..35355181,-p@chr14:35355146..35355181
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Mm9::chr16:45532095..45532155,-p@chr16:45532095..45532155
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Mm9::chr2:103123925..103123959,-p3@Ehf
Mm9::chr3:84074640..84074657,-p6@Trim2
Mm9::chr3:84074664..84074697,-p4@Trim2
Mm9::chr4:120189379..120189393,+p@chr4:120189379..120189393
+
Mm9::chr4:45811757..45811797,+p3@Aldh1b1
Mm9::chr7:107327242..107327249,+p3@Kcne3
Mm9::chr7:135136684..135136699,-p@chr7:135136684..135136699
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Mm9::chr7:135137216..135137276,-p1@Pycard
Mm9::chr7:135137345..135137359,-p2@Pycard
Mm9::chr8:108812726..108812731,-p@chr8:108812726..108812731
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0773439
MA0004.10.239244
MA0006.10.118059
MA0007.10.227553
MA0009.10.623671
MA0014.10.10125
MA0017.10.420732
MA0019.11.15568
MA0024.11.42507
MA0025.10.845702
MA0027.12.24512
MA0028.10.12472
MA0029.10.562703
MA0030.10.568779
MA0031.10.535959
MA0038.10.358622
MA0040.10.635404
MA0041.10.18185
MA0042.10.172351
MA0043.10.71494
MA0046.10.657417
MA0048.10.763962
MA0050.12.09884
MA0051.10.366328
MA0052.10.642973
MA0055.11.0953
MA0056.10
MA0057.10.226212
MA0058.10.167504
MA0059.11.00391
MA0060.10.249987
MA0061.10.615538
MA0063.10
MA0066.10.921885
MA0067.10.953264
MA0068.10.0216542
MA0069.10.643292
MA0070.10.634186
MA0071.10.269487
MA0072.10.626238
MA0073.10.0322174
MA0074.10.318792
MA0076.10.148159
MA0077.11.47371
MA0078.11.80761
MA0081.10.193203
MA0083.10.714187
MA0084.11.27474
MA0087.10.673355
MA0088.10.762401
MA0089.10
MA0090.10.610307
MA0091.12.7868
MA0092.10.213012
MA0093.10.130107
MA0095.10
MA0098.10
MA0100.10.832335
MA0101.10.182791
MA0103.10.863534
MA0105.11.37942
MA0106.11.03774
MA0107.10.428571
MA0108.20.476838
MA0109.10
MA0111.10.223614
MA0113.10.377232
MA0114.10.291992
MA0115.10.717599
MA0116.10.37608
MA0117.10.686999
MA0119.11.03177
MA0122.10.705806
MA0124.10.901619
MA0125.10.830088
MA0130.10
MA0131.10.452196
MA0132.10
MA0133.10
MA0135.10.749615
MA0136.10.891604
MA0139.11.19638
MA0140.10.30902
MA0141.10.472769
MA0142.10.522654
MA0143.10.391481
MA0144.10.296781
MA0145.10.320696
MA0146.10.383608
MA0147.10.31605
MA0148.11.29776
MA0149.10.18682
MA0062.20.637421
MA0035.20.312946
MA0039.20.77885
MA0138.20.445088
MA0002.20.208749
MA0137.20.153989
MA0104.20.229221
MA0047.21.67925
MA0112.20.0599393
MA0065.20.321967
MA0150.10.227466
MA0151.10
MA0152.10.9415
MA0153.10.765498
MA0154.10.10034
MA0155.10.369691
MA0156.11.42296
MA0157.10.493416
MA0158.10
MA0159.11.65594
MA0160.10.254455
MA0161.10
MA0162.10.0342836
MA0163.10.0738452
MA0164.10.335886
MA0080.21.97848
MA0018.20.344133
MA0099.20.439458
MA0079.20.037307
MA0102.21.32652
MA0258.10.271229
MA0259.10.299239
MA0442.10
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