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MCL coexpression mm9:526: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000153!5.85e-09!43;UBERON:0002370!1.24e-07!23;UBERON:0000974!1.24e-07!23;UBERON:0004807!1.24e-07!23;UBERON:0005058!1.24e-07!23;UBERON:0003351!1.24e-07!23;UBERON:0009113!1.24e-07!23;UBERON:0003295!1.24e-07!23;UBERON:0009722!1.24e-07!23;UBERON:0005562!1.24e-07!23;UBERON:0007690!1.24e-07!23;UBERON:0004177!1.86e-07!29;UBERON:0005057!1.86e-07!29;UBERON:0007811!2.41e-07!36;UBERON:0003408!7.34e-07!24
}}

Latest revision as of 15:27, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:120852574..120852592,-p4@Csnk1d
Mm9::chr11:120852619..120852653,-p2@Csnk1d
Mm9::chr11:69714451..69714503,-p2@2810408A11Rik
Mm9::chr12:101122708..101122741,+p1@Tdp1
Mm9::chr13:54789057..54789170,-p2@Rnf44
Mm9::chr19:6276850..6276891,+p2@Ehd1
Mm9::chr19:6363671..6363704,+p2@Sf1
Mm9::chr1:33871361..33871418,-p1@Zfp451
Mm9::chr2:157563161..157563226,+p1@Ctnnbl1
Mm9::chr2:3630721..3630746,+p2@Fam107b
Mm9::chr3:87734178..87734272,+p1@Isg20l2
Mm9::chr4:44180777..44180848,-p2@Rnf38
Mm9::chr5:143667414..143667432,-p5@Actb
Mm9::chr7:90015716..90015727,+p2@Mex3b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
anterior region of body5.85e-0943
thymus1.24e-0723
neck1.24e-0723
respiratory system epithelium1.24e-0723
hemolymphoid system gland1.24e-0723
pharyngeal epithelium1.24e-0723
thymic region1.24e-0723
pharyngeal gland1.24e-0723
entire pharyngeal arch endoderm1.24e-0723
thymus primordium1.24e-0723
early pharyngeal endoderm1.24e-0723
hemopoietic organ1.86e-0729
immune organ1.86e-0729
craniocervical region2.41e-0736
gland of gut7.34e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.67317
MA0004.10.258473
MA0006.10.817804
MA0007.10.689082
MA0009.10.649874
MA0014.13.59398
MA0017.10.150118
MA0019.10.480432
MA0024.10.608636
MA0025.10.873493
MA0027.12.275
MA0028.11.37032
MA0029.10.588275
MA0030.10.594419
MA0031.10.561217
MA0038.10.381016
MA0040.10.661716
MA0041.10.198922
MA0042.10.189008
MA0043.10.74191
MA0046.10.683926
MA0048.10.534002
MA0050.10.290354
MA0051.10.388883
MA0052.10.669354
MA0055.10.45021
MA0056.10
MA0057.13.69189
MA0058.10.541281
MA0059.11.07134
MA0060.12.02744
MA0061.10.32765
MA0063.10
MA0066.10.371389
MA0067.10.981551
MA0068.10.271058
MA0069.10.669676
MA0070.10.660488
MA0071.10.289658
MA0072.10.652465
MA0073.10.315764
MA0074.10.340281
MA0076.10.952244
MA0077.10.632005
MA0078.10.418168
MA0081.10.210747
MA0083.10.741151
MA0084.11.30392
MA0087.10.699999
MA0088.10.857785
MA0089.10
MA0090.10.231074
MA0091.11.36127
MA0092.10.653984
MA0093.10.144649
MA0095.10
MA0098.10
MA0100.11.5822
MA0101.10.199903
MA0103.10.157724
MA0105.10.170132
MA0106.10.425111
MA0107.10.46624
MA0108.20.50131
MA0109.10
MA0111.10.242308
MA0113.10.400008
MA0114.10.323836
MA0115.10.744589
MA0116.10.8172
MA0117.10.713754
MA0119.10.580747
MA0122.10.732707
MA0124.10.929684
MA0125.10.857794
MA0130.10
MA0131.10.476296
MA0132.10
MA0133.10
MA0135.10.77683
MA0136.10.357464
MA0139.11.29812
MA0140.10.330266
MA0141.10.171891
MA0142.10.547747
MA0143.10.414534
MA0144.10.100037
MA0145.11.68365
MA0146.14.00264
MA0147.10.709361
MA0148.10.271704
MA0149.10.589705
MA0062.22.04715
MA0035.20.33429
MA0039.24.81184
MA0138.20.469076
MA0002.20.0664561
MA0137.20.506794
MA0104.20.547442
MA0047.20.380343
MA0112.22.13651
MA0065.20.616691
MA0150.10.246295
MA0151.10
MA0152.10.380437
MA0153.10.792819
MA0154.11.21223
MA0155.11.40458
MA0156.10.490212
MA0157.10.518122
MA0158.10
MA0159.10.365914
MA0160.10.274172
MA0161.10
MA0162.14.35779
MA0163.10.70702
MA0164.10.357779
MA0080.20.153997
MA0018.21.708
MA0099.20.463355
MA0079.212.7913
MA0102.21.35579
MA0258.10.626814
MA0259.11.12445
MA0442.10
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