FFCP PHASE1:Hg19::chr1:3371222..3371243,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15515 | |||
|TSSclassifier=strong | |||
|UniProt=B3KTS4,Q5VV41 | |||
|association_with_transcript=75bp_to_NM_014448,uc001akg.3_5end | |||
|coexpression_cluster_id=C3973 | |||
|description=CAGE_peak_1_at_ARHGEF16_5end | |||
|id=chr1:3371222..3371243,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.37e-35!254;CL:0000223!7.27e-14!59;CL:0002076!4.90e-12!43;CL:0000082!2.69e-08!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.10e-10;42!CL:0000039;5.80e-10;7!CL:0000586;5.80e-10;7!CL:0002251;1.10e-09;20!CL:0002322;5.97e-09;5!CL:1000507;4.21e-08;10!CL:1000494;4.21e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.02e-29,253;CL:0000223,2.56e-13,58;CL:0002076,9.83e-13,42;CL:0000039,5.74e-10,7;CL:0000586,5.74e-10,7;CL:0002251,1.20e-09,20;CL:0002322,5.88e-09,5;CL:1000507,5.26e-08,10;CL:1000494,5.26e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.23e-10;86!UBERON:0008947;1.67e-09;29!CL:0000223;9.07e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.32e-42!106;DOID:0050687!1.14e-30!143;DOID:162!3.09e-16!235;DOID:14566!1.58e-15!239;DOID:299!1.93e-10!25;DOID:1749!3.58e-09!14;DOID:0050615!5.32e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.54e-13;14!DOID:305;4.04e-11;106!DOID:299;5.17e-09;25!DOID:0050687;4.44e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.18e-39,106;DOID:0050687,1.00e-30,143;DOID:162,2.50e-13,235;DOID:14566,1.19e-12,239;DOID:1749,1.75e-12,14;DOID:299,3.47e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.40e-25!169;UBERON:0000925!1.40e-25!169;UBERON:0006595!1.40e-25!169;UBERON:0001007!5.31e-23!155;UBERON:0001555!5.31e-23!155;UBERON:0007026!5.31e-23!155;UBERON:0004921!5.84e-23!129;UBERON:0004185!5.84e-23!129;UBERON:0000077!6.59e-19!130;UBERON:0001041!7.73e-16!98;UBERON:0005177!5.06e-15!107;UBERON:0000065!1.26e-13!53;UBERON:0001004!2.34e-13!72;UBERON:0000466!2.97e-13!126;UBERON:0000072!9.15e-13!46;UBERON:0008947!1.19e-12!38;UBERON:0003258!1.19e-12!38;UBERON:0000464!2.04e-11!104;UBERON:0005911!2.93e-11!82;UBERON:0001008!2.55e-10!45;UBERON:0000062!2.95e-10!511;UBERON:0000064!5.21e-10!219;UBERON:0009569!6.86e-10!113;UBERON:0006554!9.04e-10!44;UBERON:0000063!3.11e-09!97;UBERON:0003104!3.29e-09!238;UBERON:0009142!3.29e-09!238;UBERON:0000481!7.39e-09!347;UBERON:0005409!1.85e-08!35;UBERON:0004802!2.69e-08!19;UBERON:0000115!2.69e-08!19;UBERON:0000489!3.55e-08!32;UBERON:0005172!5.85e-08!55;UBERON:0005173!5.85e-08!55;UBERON:0004807!1.88e-07!28;UBERON:0005178!2.01e-07!34;UBERON:0002224!2.01e-07!34;UBERON:0003064!2.45e-07!37;UBERON:0002048!2.61e-07!22;UBERON:0000117!2.61e-07!22;UBERON:0000171!2.61e-07!22;UBERON:0000170!2.61e-07!22;UBERON:0005597!2.61e-07!22;UBERON:0000118!2.61e-07!22;UBERON:0005153!2.93e-07!37;UBERON:0002113!3.19e-07!27;UBERON:0003918!3.19e-07!27;UBERON:0005095!3.19e-07!27;UBERON:0007687!3.19e-07!27;UBERON:0001737!3.90e-07!9;UBERON:0001048!5.08e-07!168;UBERON:0005181!5.28e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.59e-14;22!UBERON:0004921;4.25e-13;33!UBERON:0000160;8.63e-11;17!UBERON:0001737;1.65e-10;9!UBERON:0001557;1.65e-10;9!UBERON:0000072;4.14e-10;37!UBERON:0000065;1.08e-08;44!UBERON:0005631;1.45e-08;10!UBERON:0000158;1.45e-08;10!UBERON:0004211;4.21e-08;10!UBERON:0009773;4.21e-08;10!UBERON:0001231;4.21e-08;10!UBERON:0004810;4.21e-08;10!UBERON:0001555;4.20e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.48e-21,118;UBERON:0001007,2.39e-20,145;UBERON:0001555,2.39e-20,145;UBERON:0007026,2.39e-20,145;UBERON:0004119,5.89e-20,160;UBERON:0000925,5.89e-20,160;UBERON:0006595,5.89e-20,160;UBERON:0001041,3.34e-13,87;UBERON:0005409,2.48e-12,25;UBERON:0008947,2.22e-11,38;UBERON:0003258,2.22e-11,38;UBERON:0005177,2.24e-11,101;UBERON:0000160,9.35e-11,17;UBERON:0001737,1.12e-10,9;UBERON:0000072,4.73e-10,47;UBERON:0001004,1.29e-09,74;UBERON:0000065,1.47e-09,54;UBERON:0009569,2.07e-09,112;UBERON:0004810,5.26e-08,10;UBERON:0005172,1.57e-07,54;UBERON:0005173,1.57e-07,54;UBERON:0002113,3.63e-07,26;UBERON:0003918,3.63e-07,26;UBERON:0011143,3.63e-07,26;UBERON:0005095,3.63e-07,26;UBERON:0007687,3.63e-07,26;UBERON:0005631,4.51e-07,14;UBERON:0000158,4.51e-07,14;UBERON:0006555,5.86e-07,16;UBERON:0004819,5.86e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,5.58240934377942,2.40285509343189,1.58260186937072,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,1.83884244895785,1.50602959389125,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.44076983047484,2.91436230634034,5.56176664176644,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,0.545492241181669,0.860413786167011,7.80631719229411,8.0843158676106,6.73924868643207,6.53064646596834,7.0649838245176,5.10968302706162,0,0,0,0,0,1.77460200059766,1.85443159085912,2.41011029883482,2.42646740011267,2.39667388501647,2.37270619111097,2.69662616320329,2.15843611637881,1.53898862778556,0,0,0,0,1.26755034821831,0,0.590789906681404,0,5.411491295897,0,0.658501712451753,0,0.301586917234893,1.48141512253647,0,0,1.44331342025273,0,0,0,0,0,3.95102198979638,4.29243081047436,0,0,0,0,0.16798212819886,0.283550194484773,0,0,0.383382679165211,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0.672786506072164,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37060810223918,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.73500477386382,0.802025881213139,0.552485933615378,0,0,0,7.21919380651859,1.15523005656622,3.13739907670742,1.46139224653261,0.949964660035881,0,0,0,0,0.270946437543853,2.50844886927427,2.03901018436031,6.64860807142979,2.68649705666614,0,0,0.256450125116389,0.328014645699706,0,1.33953315142039,0.640986253728404,0.41254749960294,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0.826424576804891,0.576570202095319,1.27612712494584,1.11273558941105,0,0,0,0,0,0,0,0,0.744316738719335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,0,2.17781969722645,0.847294206991012,0.86101074534246,1.68471475667626,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0.427296284509893,0,3.67560323971548,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0.614481528616916,0.447352215784832,0,0,0,0,0,0,0,11.041291884085,0.146508179271894,0.121360521749513,0,0,10.5047573284584,1.18785872333055,1.84296421259539,0,0,0,0,2.11125408127993,0.19924798825107,1.38141957765574,3.27512572210559,0.102268682502155,0,0,0.629078458031288,4.83357171624145,0,0.986434056369336,0,0,0,0.0927680981618513,0,0.520855522170466,3.93569999982881,0,3.18621655199399,3.0510438035132,17.2563007690594,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0.10893846351899,0.83654246567162,0.230850775511391,0,3.91958637459702,1.79515288819544,5.10642648033438,20.0970730631109,6.13703875792477,13.8589041764845,0,0.156980256395025,0,0,0.19606253431774,0,0,0,0.421996129056054,0.489698424477443,4.66465135732005,0,10.9478812418636,8.84575645033392,9.16545217400438,0,0,0,0.134802265961354,0,0,0,0.978323094660449,0,1.18375320854817,4.83962864194656,0,0.126373159256976,0.60129367765797,0.518440956986236,0,0,0.627865836814451,1.19472429772959,2.84609546029793,0,2.60339607502696,4.99761226813326,2.17648016451006,1.22308667769421,0,0.677294319023596,1.60796497589608,1.64230914106418,2.71569246167574,1.235585773681,0.225980740780532,0,0,0,2.34661659281764,0.240476460754601,11.3130087211857,1.9980960958213,7.2045208577053,0.229073192331831,0.514784993585894,0.14405479798815,0.372757606696298,5.1852687615695,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0.399358000997982,0,0,0,0,19.8043114196672,1.96957955768059,2.55489160981616,1.95470277177136,0.885847333632739,0,0,0,5.46560704781065,3.98864366131978,3.32352270423348,0.2249738915515,0,0,1.67717343799633,2.04894838977915,3.40954822877488,0.211200673038813,1.07572403599707,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0.146552233678082,2.65013777824443,0,0,0.171086837884329,3.52407511158336,0.533937062838473,0,0,0,0,0,6.38341257770182,0,0,0,0,4.86867698375726,0,0,0,0,0.221858103073705,0.496771223531068,0,0.874862855734746,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,2.57329909649911,0.782982875895635,0,0.231522474323834,0,0.179088841081487,0.308801447160972,0.219284049578707,0,0.771656153083659,0,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,2.09819261579167,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0.0691572524642179,0,0,3.04257927353179,2.00548529691159,2.38457178078183,4.27444964756251,0,0,0,0,0,0.781514011233092,0.785720083444267,0,3.40068998299204,0.0675375846183947,0,0,0.126831620387814,0,0,0.992422356778588,0,4.59944739502543,0.53570183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| |||
|short_description=p1@ARHGEF16 | |||
}} |
Revision as of 15:58, 10 January 2014
Short description: | p1@ARHGEF16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARHGEF16_5end |
Coexpression cluster: | C3973_bronchogenic_chorionic_hepatoblastoma_small_testicular_rectum_adenocarcinoma |
Association with transcript: | 75bp_to_NM_014448, uc001akg.3_5end |
EntrezGene: | ARHGEF16 |
HGNC: | 15515 |
UniProt: | B3KTS4Q5VV41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.02e-29 | 253 |
endodermal cell | 2.56e-13 | 58 |
endo-epithelial cell | 9.83e-13 | 42 |
germ line cell | 5.74e-10 | 7 |
germ cell | 5.74e-10 | 7 |
epithelial cell of alimentary canal | 1.20e-09 | 20 |
embryonic stem cell | 5.88e-09 | 5 |
kidney tubule cell | 5.26e-08 | 10 |
nephron tubule epithelial cell | 5.26e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 4.48e-21 | 118 |
digestive system | 2.39e-20 | 145 |
digestive tract | 2.39e-20 | 145 |
primitive gut | 2.39e-20 | 145 |
endoderm-derived structure | 5.89e-20 | 160 |
endoderm | 5.89e-20 | 160 |
presumptive endoderm | 5.89e-20 | 160 |
foregut | 3.34e-13 | 87 |
gastrointestinal system | 2.48e-12 | 25 |
respiratory primordium | 2.22e-11 | 38 |
endoderm of foregut | 2.22e-11 | 38 |
trunk region element | 2.24e-11 | 101 |
intestine | 9.35e-11 | 17 |
larynx | 1.12e-10 | 9 |
segment of respiratory tract | 4.73e-10 | 47 |
respiratory system | 1.29e-09 | 74 |
respiratory tract | 1.47e-09 | 54 |
subdivision of trunk | 2.07e-09 | 112 |
nephron tubule epithelium | 5.26e-08 | 10 |
abdomen element | 1.57e-07 | 54 |
abdominal segment element | 1.57e-07 | 54 |
kidney | 3.63e-07 | 26 |
kidney mesenchyme | 3.63e-07 | 26 |
upper urinary tract | 3.63e-07 | 26 |
kidney rudiment | 3.63e-07 | 26 |
kidney field | 3.63e-07 | 26 |
extraembryonic membrane | 4.51e-07 | 14 |
membranous layer | 4.51e-07 | 14 |
excretory tube | 5.86e-07 | 16 |
kidney epithelium | 5.86e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.18e-39 | 106 |
cell type cancer | 1.00e-30 | 143 |
cancer | 2.50e-13 | 235 |
disease of cellular proliferation | 1.19e-12 | 239 |
squamous cell carcinoma | 1.75e-12 | 14 |
adenocarcinoma | 3.47e-09 | 25 |