FFCP PHASE1:Hg19::chr1:82266053..82266069,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23266 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18582 | |||
|TSSclassifier=strong | |||
|UniProt=B1ALU3,B1ALU2,O95490,B1ALU4,B1ALU5 | |||
|association_with_transcript=-12bp_to_ENST00000271029,ENST00000319517,ENST00000335786,ENST00000370713,ENST00000370715,ENST00000370717,ENST00000394879,NM_012302,uc001diu.2,uc001div.2,uc009wcd.2_5end | |||
|description=CAGE_peak_2_at_LPHN2_5end | |||
|id=chr1:82266053..82266069,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.25e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.72e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.06e-13!115;UBERON:0004111!2.87e-13!241;UBERON:0000468!7.62e-13!659;UBERON:0000477!1.01e-12!286;UBERON:0000481!2.76e-12!347;UBERON:0000475!2.85e-12!365;UBERON:0000025!1.53e-11!194;UBERON:0000119!1.44e-10!312;UBERON:0000483!1.96e-10!309;UBERON:0000922!5.34e-10!612;UBERON:0000467!6.60e-10!625;UBERON:0000480!9.74e-10!626;UBERON:0000062!1.31e-08!511;UBERON:0000466!2.85e-08!126;UBERON:0004121!5.50e-08!169;UBERON:0002050!1.05e-07!605;UBERON:0005423!1.05e-07!605;UBERON:0003075!1.55e-07!86;UBERON:0007284!1.55e-07!86;UBERON:0000923!1.95e-07!604;UBERON:0005291!1.95e-07!604;UBERON:0006598!1.95e-07!604;UBERON:0002532!1.95e-07!604;UBERON:0004458!2.48e-07!49;UBERON:0002323!2.56e-07!46;UBERON:0000464!2.56e-07!104;UBERON:0001017!3.28e-07!82;UBERON:0000924!3.79e-07!173;UBERON:0006601!3.79e-07!173;UBERON:0001049!4.15e-07!57;UBERON:0005068!4.15e-07!57;UBERON:0006241!4.15e-07!57;UBERON:0007135!4.15e-07!57;UBERON:0002100!4.71e-07!216;UBERON:0001048!7.45e-07!168;UBERON:0000153!7.50e-07!129;UBERON:0007811!7.50e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;9.84e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.57e-14,114;UBERON:0004111,6.94e-10,240;UBERON:0000025,6.52e-09,192;UBERON:0000922,3.11e-08,592;UBERON:0010314,8.87e-08,132;UBERON:0002553,1.65e-07,61;UBERON:0002323,2.62e-07,46;UBERON:0004458,3.67e-07,49;UBERON:0001049,6.18e-07,56;UBERON:0005068,6.18e-07,56;UBERON:0006241,6.18e-07,56;UBERON:0007135,6.18e-07,56 | |||
|phase1_expression=1.09007027562334,0.214100523890983,1.12763523276777,1.0007329835313,2.23480547213644,0.872338524100369,0,0,0,0.245733936501509,0,0.655324116390517,0.527533956456907,0.123766352960047,0.331397375727916,0,2.41077811209591,0,0.975865597581014,0.369363174230364,0,0,0,0.136874425072884,0.125542639594803,1.60468152070698,0.985207073399349,1.18066171970519,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.767175371061182,0,0,0,0,0,1.03988298880475,0.665188192387692,1.14185221401064,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,1.8089173141853,3.20189636418039,3.68192674041137,0,0,0.24406205754817,1.10298924103761,0.81014194788176,0.446498641420399,0.22452937262617,0.112611480483322,0,0,0.732806975721629,0,0,0.872188104285069,1.49091585508596,0.506522046658319,1.45650098894541,1.43418310374407,1.41867352879343,0,1.06748995729705,1.2333377420858,0.622422070799533,1.34710672069688,0.653847612453835,0.302714855289863,0,0,0,0,0.298897361103602,0.352303495931295,0.323745888736263,1.12360645361799,0.408308342509787,1.10550885580591,0.413303124703062,0,0,0.910161361938026,0,1.68336113954066,0.625592599359821,0,0,0.612975591598039,0.901428353439581,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.103052529238439,0.257640540045629,0.744467425326359,0.506328996723799,0,0.504867548488229,0.276149695926898,0.323292113637624,0.355009592516614,0.403008392910561,0,0.193260853163297,0.272746120590835,0,4.26907971453584,3.31324420803713,3.36962434321603,2.48786532036889,1.7662459561294,0.36497735907583,0,0.643240938192885,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,1.47008711385542,0,0,1.77236972004421,0,0,0.343135620597051,0.109750285408626,0,0,1.574003567695,0.325808305310325,0,0,0.579652024875384,0.352226082707465,0.144366447761074,0,0.570762456703795,0,0,0,0,0,0,0.671928512795438,0.283550194484773,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,3.4214489204541,0,0,0,0.112131084345361,0.43596006883328,0.36669142910475,0.387815147273333,0,0,0,0,0,0,0.266422179016099,0.857867961948885,0,0,1.62868092146868,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0.207970861530807,0.713715955188647,0.630809660135739,0.937131319941706,0.300946099727719,0,0,0,0.553107505625109,0.260650843404249,0.195801157462741,0,0,0,0,0.303127571446259,0,0.30239029332968,1.48864684691266,2.30192959932094,0.841980283299221,1.15325234330131,0.511707249066704,1.12597744800525,1.48418066444991,0.154209693802656,0.710246901252508,0.410635780069046,0,0.464841513839837,0.120859449591622,1.20303882181971,0.920809889358963,0.114814448164607,0,0.262248829918848,0,1.15523005656622,0,0,1.37217117560738,1.13733384070897,0.510281115829547,0,0,0.812839312631559,0,0.764628819135115,0.831076008928724,0.223874754722178,0,0,0,0,0,3.91555844261345,0.732555718546747,0.742585499285292,0.574265537996172,0,0,0.580024309752732,0.924291702687866,0.307007349452259,0.275673144969061,0.644521469209642,0.290033387828457,1.36362603865761,0.890320356467374,0.661139661443912,0.384380134730212,2.16941611240793,0.809262246844399,0.464845549297286,3.77774816196768,0,1.23213432070436,0.532306030317022,0,0.37064843820784,1.00187420719394,0.744316738719335,0.316379424718726,0.190630193923825,0,0,1.27281299170375,0,0.359744915166629,0.823611089208164,0.589062011728432,0.404364963146632,0,0.421258456238981,0,4.14312932373184,2.11300293513511,0.136499911407986,0,1.13008116620243,1.65409603063837,0.66343897524122,0,0.578775534266688,1.31178950409327,0,0,0,0.430234056612155,0,0,0,0,0.658589785919804,0,0,0.384888450902048,0.670302275535787,0,3.38917682796405,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0.321176150207399,0.201799707191048,1.70338495076131,0,1.53620382154229,0.894704431569664,2.33588798396672,0,0,0,0,0,0,0,2.19762268907841,7.03891026147178,0,0,0.71623345421307,0.593929361665277,1.53580351049616,0,1.1253553312841,0.556543525114529,0,0.211125408127993,0.796991953004279,1.38141957765574,0,0,0,0,1.43789361835723,3.22238114416096,0,0.493217028184668,0,0,0.969332746095218,0.556608588971108,0,0.260427761085233,0,1.44999915086959,0,1.01701460117107,0,2.06846023944879,0,0,0,2.65312164975897,0,0.884634079449797,0,1.75508317723178,0,0,2.15460723810632,0.91153644677601,0,0.0897576444097721,0.651884231532048,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0.421996129056054,1.14262965711403,0,0.216388639742091,0,1.06149077404007,1.22206028986725,0,0.123563938946503,0.208843899010911,0.606610196826093,3.21031058919516,0,0,0,0,0,3.62972148145992,0.306072761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| |||
|short_description=p2@LPHN2 | |||
}} |
Revision as of 19:15, 10 January 2014
Short description: | p2@LPHN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LPHN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000271029, ENST00000319517, ENST00000335786, ENST00000370713, ENST00000370715, ENST00000370717, ENST00000394879, NM_012302, uc001diu.2, uc001div.2, uc009wcd.2_5end |
EntrezGene: | LPHN2 |
HGNC: | 18582 |
UniProt: | B1ALU3B1ALU2O95490B1ALU4B1ALU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.72e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.57e-14 | 114 |
anatomical conduit | 6.94e-10 | 240 |
tube | 6.52e-09 | 192 |
embryo | 3.11e-08 | 592 |
structure with developmental contribution from neural crest | 8.87e-08 | 132 |
anatomical cavity | 1.65e-07 | 61 |
body cavity | 2.62e-07 | 46 |
body cavity or lining | 3.67e-07 | 49 |
neural tube | 6.18e-07 | 56 |
neural rod | 6.18e-07 | 56 |
future spinal cord | 6.18e-07 | 56 |
neural keel | 6.18e-07 | 56 |