FFCP PHASE1:Hg19::chr1:152769195..152769200,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=353134 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29465 | |||
|TSSclassifier=not | |||
|UniProt=Q5T752 | |||
|association_with_transcript=-16bp_to_ENST00000326233_5end | |||
|coexpression_cluster_id=C202 | |||
|description=CAGE_peak_1_at_LCE1D_5end | |||
|id=chr1:152769195..152769200,+ | |||
|ontology_enrichment_celltype=CL:0000622!1.82e-26!5;CL:0002623!3.29e-25!3;CL:0000154!4.19e-22!6;CL:0000362!1.22e-16!8;CL:0002159!1.76e-15!13;CL:0000312!2.25e-15!5;CL:0000150!8.15e-15!9;CL:0000240!6.64e-13!6;CL:0000311!6.64e-13!6;CL:0000079!6.64e-13!6;CL:0000237!6.64e-13!6;CL:0000036!6.64e-13!6;CL:0000357!6.64e-13!6;CL:0000114!6.64e-13!6;CL:0002573!1.43e-11!2;CL:0002077!2.17e-08!33;CL:0000453!2.94e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000622;3.06e-36;5!CL:0000154;2.39e-30;6!CL:0002623;1.49e-27;3!CL:0000150;1.68e-20;9!CL:0000362;2.11e-20;9!CL:0000312;7.51e-17;5!CL:0000240;3.25e-14;6!CL:0000311;3.25e-14;6!CL:0000079;3.25e-14;6!CL:0000237;3.25e-14;6!CL:0002159;2.25e-13;14!CL:0000317;3.70e-11;2!CL:1000448;3.70e-11;2!CL:0002308;3.70e-11;2!CL:0002140;3.70e-11;2!CL:0002077;1.02e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,2.88e-36,5;CL:0000154,2.28e-30,6;CL:0002623,1.39e-27,3;CL:0000150,1.62e-20,9;CL:0000362,2.26e-20,9;CL:0000312,8.14e-17,5;CL:0000240,3.48e-14,6;CL:0000311,3.48e-14,6;CL:0000079,3.48e-14,6;CL:0000237,3.48e-14,6;CL:0000036,3.48e-14,6;CL:0000357,3.48e-14,6;CL:0000114,3.48e-14,6;CL:0002159,2.35e-13,14;CL:0000317,3.70e-11,2;CL:1000448,3.70e-11,2;CL:0002308,3.70e-11,2;CL:0002140,3.70e-11,2;CL:0002077,1.21e-09,34 | |||
|ontology_enrichment_development_v019=UBERON:0004874;3.12e-21;1!CL:0000357;3.25e-14;6!CL:0000114;3.25e-14;6!UBERON:0008814;4.30e-11;2!UBERON:0010056;4.30e-11;2 | |||
|ontology_enrichment_disease=DOID:3151!9.44e-10!1;DOID:3149!9.44e-10!1;DOID:3347!1.84e-09!1;DOID:178!3.25e-09!1;DOID:326!3.25e-09!1;DOID:3978!3.25e-09!1;DOID:3394!3.25e-09!1;DOID:5844!3.25e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.30e-21;1!DOID:3149;2.30e-21;1!DOID:3451;2.23e-11;2!DOID:4159;2.23e-11;2!DOID:0060122;2.23e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,2.30e-21,1;DOID:3149,2.30e-21,1;DOID:3451,2.23e-11,2;DOID:4159,2.23e-11,2;DOID:0060122,2.23e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0003408!6.01e-20!10;UBERON:0001003!1.34e-14!14;UBERON:0007376!1.34e-14!14;UBERON:0007383!1.34e-14!14;UBERON:0001044!6.64e-13!6;UBERON:0003293!6.64e-13!6;UBERON:0003294!6.64e-13!6;UBERON:0010047!6.64e-13!6;UBERON:0000167!6.64e-13!6;UBERON:0001042!6.69e-13!10;UBERON:0009145!6.69e-13!10;UBERON:0006562!9.56e-12!11;UBERON:0001723!9.83e-12!3;UBERON:0001033!9.83e-12!3;UBERON:0010056!9.83e-12!3;UBERON:0000078!3.47e-11!18;UBERON:0001557!3.21e-10!19;UBERON:0007029!8.68e-10!1;UBERON:0000989!1.03e-09!1;UBERON:0008811!1.03e-09!1;UBERON:0006258!1.03e-09!1;UBERON:0005876!1.03e-09!1;UBERON:0004874!1.03e-09!1;UBERON:0000166!1.46e-09!21;UBERON:0000014!2.35e-09!4;UBERON:0002370!1.00e-08!4;UBERON:0005058!1.00e-08!4;UBERON:0009113!1.00e-08!4;UBERON:0003295!1.00e-08!4;UBERON:0005562!1.00e-08!4;UBERON:0008814!1.17e-08!15;UBERON:0003102!1.43e-08!95;UBERON:0000165!4.05e-07!28;UBERON:0000930!4.05e-07!28;UBERON:0002097!5.96e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.58e-21;15!UBERON:0007376;1.58e-21;15!UBERON:0007029;1.88e-21;1!UBERON:0000989;3.12e-21;1!UBERON:0008811;3.12e-21;1!UBERON:0000014;4.68e-21;4!UBERON:0001044;2.57e-14;6!UBERON:0003293;2.57e-14;6!UBERON:0003294;2.57e-14;6!UBERON:0010047;2.57e-14;6!UBERON:0003408;2.57e-14;6!UBERON:0000167;2.57e-14;6!UBERON:0002199;5.69e-12;46!UBERON:0002416;5.69e-12;46!UBERON:0002419;3.70e-11;2!UBERON:0007771;3.70e-11;2!UBERON:0003297;3.70e-11;2!UBERON:0001821;3.70e-11;2!UBERON:0003487;3.70e-11;2!UBERON:0001820;3.70e-11;2!UBERON:0010371;1.54e-10;31!UBERON:0002097;1.62e-10;41!UBERON:0001723;8.02e-08;3!UBERON:0001033;8.02e-08;3!UBERON:0000165;5.25e-07;28!UBERON:0003102;6.06e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.66e-21,15;UBERON:0007376,1.66e-21,15;UBERON:0007383,1.66e-21,15;UBERON:0007029,1.88e-21,1;UBERON:0000989,2.82e-21,1;UBERON:0008811,2.82e-21,1;UBERON:0006258,2.82e-21,1;UBERON:0005876,2.82e-21,1;UBERON:0004874,2.82e-21,1;UBERON:0000014,4.68e-21,4;UBERON:0001044,2.49e-14,6;UBERON:0003293,2.49e-14,6;UBERON:0003294,2.49e-14,6;UBERON:0010047,2.49e-14,6;UBERON:0000167,2.49e-14,6;UBERON:0003102,1.69e-12,99;UBERON:0002097,2.89e-12,41;UBERON:0002419,3.70e-11,2;UBERON:0007771,3.70e-11,2;UBERON:0003297,3.70e-11,2;UBERON:0001821,3.70e-11,2;UBERON:0003487,3.70e-11,2;UBERON:0001820,3.70e-11,2;UBERON:0005089,3.70e-11,2;UBERON:0005088,3.70e-11,2;UBERON:0002199,6.04e-11,46;UBERON:0002416,6.04e-11,46;UBERON:0003408,5.57e-09,10;UBERON:0000166,9.18e-09,22;UBERON:0001723,8.29e-08,3;UBERON:0001033,8.29e-08,3;UBERON:0010056,8.29e-08,3;UBERON:0000165,8.77e-07,29;UBERON:0000930,8.77e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25576626829166,3.37205259772859,0.603173834469785,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.72130187758092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0,0.163565394255844,0,0,0,0,0,0,0,0,1.81843360035278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,6.45074531906083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,3.414369541879,147.238307966402,0,0.236664001461131,0.340853619036631,0,0,0,0,0,0,0,0,0,0,23.3141276668387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.186224142887574,0,0,0,1.08858373948481,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LCE1D | |||
}} |
Revision as of 20:56, 10 January 2014
Short description: | p1@LCE1D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LCE1D_5end |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | -16bp_to_ENST00000326233_5end |
EntrezGene: | LCE1D |
HGNC: | 29465 |
UniProt: | Q5T752 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 2.88e-36 | 5 |
protein secreting cell | 2.28e-30 | 6 |
acinar cell of salivary gland | 1.39e-27 | 3 |
glandular epithelial cell | 1.62e-20 | 9 |
epidermal cell | 2.26e-20 | 9 |
keratinocyte | 8.14e-17 | 5 |
stratified squamous epithelial cell | 3.48e-14 | 6 |
keratin accumulating cell | 3.48e-14 | 6 |
stratified epithelial cell | 3.48e-14 | 6 |
keratinizing barrier epithelial cell | 3.48e-14 | 6 |
epithelial fate stem cell | 3.48e-14 | 6 |
stratified epithelial stem cell | 3.48e-14 | 6 |
surface ectodermal cell | 3.48e-14 | 6 |
general ecto-epithelial cell | 2.35e-13 | 14 |
sebum secreting cell | 3.70e-11 | 2 |
epithelial cell of sweat gland | 3.70e-11 | 2 |
epithelial cell of skin gland | 3.70e-11 | 2 |
acinar cell of sebaceous gland | 3.70e-11 | 2 |
ecto-epithelial cell | 1.21e-09 | 34 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.66e-21 | 15 |
outer epithelium | 1.66e-21 | 15 |
enveloping layer of ectoderm | 1.66e-21 | 15 |
surface | 1.88e-21 | 1 |
penis | 2.82e-21 | 1 |
intromittent organ | 2.82e-21 | 1 |
lateral plate mesenchyme | 2.82e-21 | 1 |
undifferentiated genital tubercle | 2.82e-21 | 1 |
somatopleure | 2.82e-21 | 1 |
zone of skin | 4.68e-21 | 4 |
saliva-secreting gland | 2.49e-14 | 6 |
gland of oral region | 2.49e-14 | 6 |
gland of foregut | 2.49e-14 | 6 |
oral gland | 2.49e-14 | 6 |
oral cavity | 2.49e-14 | 6 |
surface structure | 1.69e-12 | 99 |
skin of body | 2.89e-12 | 41 |
skin gland | 3.70e-11 | 2 |
epidermis gland | 3.70e-11 | 2 |
gland of integumental system | 3.70e-11 | 2 |
sebaceous gland | 3.70e-11 | 2 |
skin sebaceous gland | 3.70e-11 | 2 |
sweat gland | 3.70e-11 | 2 |
sweat gland placode | 3.70e-11 | 2 |
sebaceous gland placode | 3.70e-11 | 2 |
integument | 6.04e-11 | 46 |
integumental system | 6.04e-11 | 46 |
gland of gut | 5.57e-09 | 10 |
oral opening | 9.18e-09 | 22 |
tongue | 8.29e-08 | 3 |
gustatory system | 8.29e-08 | 3 |
future tongue | 8.29e-08 | 3 |
mouth | 8.77e-07 | 29 |
stomodeum | 8.77e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 2.30e-21 | 1 |
keratoacanthoma | 2.30e-21 | 1 |
skin carcinoma | 2.23e-11 | 2 |
skin cancer | 2.23e-11 | 2 |
integumentary system cancer | 2.23e-11 | 2 |