FFCP PHASE1:Hg19::chr1:209823365..209823389,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C571 | |||
|description=CAGE_peak_at_chr1:209823365..209823389,- | |||
|id=chr1:209823365..209823389,- | |||
|ontology_enrichment_celltype=CL:0002076!7.59e-27!43;CL:0000066!5.23e-22!254;CL:0000223!6.43e-17!59;CL:0002368!2.74e-15!13;CL:0002159!3.69e-10!13;CL:0002251!1.48e-09!21;CL:0002202!2.70e-09!9;CL:0002632!2.70e-09!9;CL:0000063!1.01e-08!578;CL:0000860!3.37e-08!45;CL:0000244!7.43e-08!4;CL:0000731!7.43e-08!4;CL:0002057!3.83e-07!42;CL:0002077!6.40e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.89e-31;13!CL:0002159;1.11e-27;14!CL:0002076;7.64e-24;42!CL:0002328;2.56e-16;3!CL:0002166;4.51e-16;3!CL:0002621;5.53e-16;3!CL:0002202;1.61e-14;9!CL:0002632;1.61e-14;9!CL:0000244;3.18e-12;4!CL:0000731;3.18e-12;4!CL:0002077;7.35e-12;34!CL:0000575;9.14e-11;2!CL:0000312;7.71e-10;5!CL:0000362;3.24e-09;9!CL:0000240;2.85e-08;6!CL:0000311;2.85e-08;6!CL:0000079;2.85e-08;6!CL:0000237;2.85e-08;6!CL:0002231;3.40e-08;3!CL:0000307;4.05e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.43e-31,13;CL:0002076,4.73e-28,42;CL:0002159,6.16e-28,14;CL:0000223,2.59e-19,58;CL:0000066,4.02e-19,253;CL:0002328,1.42e-16,3;CL:0002166,3.59e-16,3;CL:0002621,6.63e-16,3;CL:0002202,1.24e-14,9;CL:0002632,1.24e-14,9;CL:0002077,5.00e-13,34;CL:0000244,2.54e-12,4;CL:0000731,2.54e-12,4;CL:0000575,3.50e-11,2;CL:0000312,7.38e-10,5;CL:0002321,8.05e-10,250;CL:0000362,3.62e-09,9;CL:0000240,2.75e-08,6;CL:0000311,2.75e-08,6;CL:0000079,2.75e-08,6;CL:0000237,2.75e-08,6;CL:0000036,2.75e-08,6;CL:0000357,2.75e-08,6;CL:0000114,2.75e-08,6;CL:0002231,3.29e-08,3;CL:0000068,4.35e-08,3;CL:0000069,4.35e-08,3;CL:0000307,4.35e-08,3;CL:0000377,4.35e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.49e-10;58!CL:0000357;2.85e-08;6!CL:0000114;2.85e-08;6!CL:0000377;4.05e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!4.45e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!2.36e-10!72;UBERON:0005631!8.42e-10!14;UBERON:0000158!8.42e-10!14;UBERON:0004119!5.49e-09!169;UBERON:0000925!5.49e-09!169;UBERON:0006595!5.49e-09!169;UBERON:0000365!5.89e-09!5;UBERON:0007196!1.74e-08!14;UBERON:0001558!1.74e-08!14;UBERON:0000161!2.02e-08!35;UBERON:0000166!8.20e-08!21;UBERON:0003124!1.40e-07!7;UBERON:0005910!2.39e-07!6;UBERON:0003729!5.15e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.56e-16;3!UBERON:0002031;2.56e-16;3!UBERON:0001949;5.53e-16;3!UBERON:0000486;6.83e-15;12!UBERON:0001708;3.50e-12;4!UBERON:0008895;3.50e-12;4!UBERON:0002185;5.52e-10;5!UBERON:0000365;7.15e-10;5!UBERON:0011159;7.71e-10;5!UBERON:0005911;5.54e-09;36!UBERON:0007196;1.35e-08;15!UBERON:0001558;1.35e-08;15!UBERON:0005910;2.68e-08;6!UBERON:0004807;6.79e-08;22!UBERON:0000485;3.00e-07;7!UBERON:0003929;4.12e-07;7!UBERON:0010371;4.71e-07;31!UBERON:0000305;8.02e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.42e-16,3;UBERON:0002031,1.42e-16,3;UBERON:0001949,6.63e-16,3;UBERON:0001708,2.95e-12,4;UBERON:0008895,2.95e-12,4;UBERON:0002185,3.90e-10,5;UBERON:0000365,5.97e-10,5;UBERON:0011159,6.74e-10,5;UBERON:0001004,4.54e-09,74;UBERON:0007196,1.16e-08,15;UBERON:0001558,1.16e-08,15;UBERON:0003102,2.20e-08,99;UBERON:0005910,2.31e-08,6;UBERON:0004119,2.44e-08,160;UBERON:0000925,2.44e-08,160;UBERON:0006595,2.44e-08,160;UBERON:0010188,2.55e-08,6;UBERON:0002539,2.55e-08,6;UBERON:0008816,2.55e-08,6;UBERON:0005157,2.04e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.873765488520689,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,3.91567694411725,17.0086844676722,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.752969358170419,0.272906150057846,0.224723484445085,0.918251677112708,0,1.27867425159808,0,0.199463657621632,0,1.45104619314292,0.56738522469114,0.622822248995575,0,0,0,0.605399502633369,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,1.54608682530637,3.27295344709002,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,2.19500570817251,4.49607013030478,1.70899253099772,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,4.70349958956807,1.70130116690864,1.16426079513703,0.871901815541886,3.4504441124869,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.234282829985426,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0.303127571446259,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,8.02025881213139,4.8802924136025,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0.254876273045038,1.66215201785745,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,5.12383237619032,3.45942121257191,1.27612712494584,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07910760721639,0.670302275535787,6.53345909167936,0,1.72202149068492,5.05414427002877,2.66058092122005,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0,1.53580351049616,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.0769502585037971,0,0,0,0,0.957003479195758,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.677294319023596,0,0.164230914106418,0,0,0,0.685209623233754,0,0,0,0,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,1.41159491818903,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0.414706207840855,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.179088841081487,0,0,0.176689145945881,0,0.337884881306145,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0.979156554036111,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,2.56800037930351,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0.846774100381858,0.4582137370881,0.62041277132864,0.955538938977433,0,0.490751168076215,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0.240724100067505,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.426467963801962,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.215166616178029,0.332660356546013,0.325613074443898,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p@chr1:209823365..209823389,- | |||
}} |
Revision as of 23:58, 10 January 2014
Short description: | p@chr1:209823365..209823389, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr1:209823365..209823389, - |
Coexpression cluster: | C571_Bronchial_Prostate_Small_Tracheal_Mallassezderived_Urothelial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.42e-16 | 3 |
epithelium of bronchus | 1.42e-16 | 3 |
gingival epithelium | 6.63e-16 | 3 |
jaw skeleton | 2.95e-12 | 4 |
splanchnocranium | 2.95e-12 | 4 |
bronchus | 3.90e-10 | 5 |
urothelium | 5.97e-10 | 5 |
primary subdivision of cranial skeletal system | 6.74e-10 | 5 |
respiratory system | 4.54e-09 | 74 |
tracheobronchial tree | 1.16e-08 | 15 |
lower respiratory tract | 1.16e-08 | 15 |
surface structure | 2.20e-08 | 99 |
transitional epithelium | 2.31e-08 | 6 |
endoderm-derived structure | 2.44e-08 | 160 |
endoderm | 2.44e-08 | 160 |
presumptive endoderm | 2.44e-08 | 160 |
protuberance | 2.55e-08 | 6 |
pharyngeal arch | 2.55e-08 | 6 |
embryonic head | 2.55e-08 | 6 |
epithelial fold | 2.04e-07 | 47 |