FFCP PHASE1:Hg19::chr11:1889921..1889954,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4046 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |||
|TSSclassifier=strong | |||
|UniProt=E9PBV6,P33241 | |||
|association_with_transcript=18bp_to_ENST00000405957,NM_001013253,uc001luk.2_5end | |||
|coexpression_cluster_id=C2118 | |||
|description=CAGE_peak_4_at_LSP1_5end | |||
|id=chr11:1889921..1889954,+ | |||
|ontology_enrichment_celltype=CL:0000188!1.91e-10!9;CL:0000153!1.77e-07!9;CL:0000447!1.77e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000188;3.40e-12;9!CL:0000153;6.11e-11;9!CL:0000447;6.11e-11;9!CL:0000680;1.23e-09;7!CL:0000138;7.42e-09;6!CL:0000056;1.43e-08;4!CL:0000327;9.99e-08;15!CL:0000135;2.03e-07;3!CL:0000388;2.03e-07;3!CL:0000515;6.93e-07;3!CL:0000499;9.09e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,3.03e-12,9;CL:0000153,6.17e-11,9;CL:0000447,6.17e-11,9;CL:0000058,7.49e-09,6;CL:0000138,7.49e-09,6;CL:0000515,1.30e-08,4;CL:0000327,1.00e-07,15;CL:0000135,2.03e-07,3;CL:0000388,2.03e-07,3;CL:0000499,9.11e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000515;1.43e-08;4!UBERON:0006603;1.66e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.46e-22!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;4.37e-23;16!UBERON:0002036;4.37e-23;16!UBERON:0002385;1.02e-12;31!UBERON:0001015;1.02e-12;31!UBERON:0000383;1.02e-12;31!UBERON:0007846;2.03e-07;3!UBERON:0000043;2.03e-07;3!UBERON:0007845;2.03e-07;3!UBERON:0002204;2.12e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.92e-18,114;UBERON:0007846,2.03e-07,3;UBERON:0000043,2.03e-07,3;UBERON:0007845,2.03e-07,3 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,1.26343974685366,4.44015567939725,0,0,0,0,2.97039247104112,1.98838425436749,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,23.8549840573814,28.0749229956098,9.84956328933601,14.3151470469198,88.0809115247771,0,0,0.087834785693126,2.88153966094968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,3.28050004567315,0,0,0.298897361103602,0,0,0,0.204154171254893,0.737005903870608,0.826606249406124,0,0,1.82032272387605,0,0.505008341862199,0.625592599359821,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,2.42469085228218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,5.60967095213783,0.4115740113314,8.82052268313252,0,0,1.77236972004421,0,0,0,0,0,0,0,1.95484983186195,9.35941306751621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0,0,0,0,10.7296933755565,0.845302752556,0,0,0.257207374262142,0,0,0,100.384996997417,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,9.98458335285029,8.83165970672233,14.5888189010772,22.7407423314667,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,1.00034104211935,0,0,0,0,0,1.80567659836631,4.5481500811197,0,0,0.368738337083406,0,0.783204629850962,20.2454620048405,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,0.732555718546747,1.07262349896764,0,0,0,8.60369392799886,2.92692372517824,5.37262861541453,8.40803092155637,0.644521469209642,3.91545073568417,4.68746450788555,9.25933170726069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,3.42351190427136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0.143411352204052,0.589494246078727,0,0,25.5440238710174,29.3072454734313,0,1.74967360122491,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39524537815682,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0.844501632511974,6.97367958878744,4.69682656402951,0,0,0,0,0,0,0,10.7521312144258,0,0,0,0,0,0,0,3.62499787717397,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,20.2379179864986,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.96683351754953,1.76915129006678,1.22206028986725,0,0,0,0.876214728748802,3.21031058919516,0,0,0,0,4.73501283419269,0,0,1.76922422959766,0,0,0,0,0,0,0,0,0,0.685946781900644,0,16.7737601512349,0,0,0,0,4.65547279144413,0,6.32746074185491,0,0,0,0,0,7.68430781061669,2.39771531498556,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,14.5226848661572,16.7287109528529,2.15361907373044,2.1964690054889,3.43380838509257,3.79391477651183,0.671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.157363764404994,0,0,0,3.57347663186684,1.32418394073086,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0.496166021811951,0,0,0,1.63205341010842,2.506898940227,3.06345576763462,2.29510841496863,0,0,0,0,0,0,0.0620964029413835,0,0.999843263696853,0,0,0,0,0,0.895528817321244,0.233713309847224,0,0.568209015825267,2.51567901752575,1.77962244319307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.4019712910839,18.199972374688,12.7964805731049,12.6184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.256916900385838,0,0,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0,4.19520305013884,0,0,1.35378591028663,0,0.781514011233092,0,0,0,0,0,0,0,0,3.83780436800028,19.3522359571825,0,0,0.535701835878287,0.336283722218824,0,0.227662191351298,6.20916591138472,0,1.20041606606193,0.0679697329768317,0.0657727735628491,0,0,6.12246124234009,0,0,0,0,0,27.3040398754827,0,0,0,0,0,0.51215543128185,0,5.59295566466361,0,0,2.11693525095465,0,0.31020638566432,0,0,0,0,3.23714418593947,4.92781472909986,5.799072156691,1.45713297917742,0,0,0,0,0,0,1.31196068783506,0,0,11.7671194441875,0,0,0,0,0.169927114687817,32.5184356210293,0.128915775947154,0,0,0,0,9.49437304720472,9.17458566809082,0.143339583151451,0,0.0679914901909147,0,2.1161073620616,30.8755865078404,57.7719535789273,57.5393327624639,0,0,0.126698501011437,0,0,0.0918948995348449,0,5.45606627171324,7.23503151421682,0,0,19.1910583710883,2.3806443146374,0.258355639344024,0.124149428591716,0.112131862580613,0.381882949668989,1.81905470062397,13.9338718654055,6.50243272062034,2.49202596153974,1.43444410785353,3.99192427855216,0,0,0,0,28.1569130884145,5.86758932077759,0,3.32878387092756,5.83694001413976,0 | |||
|short_description=p4@LSP1 | |||
}} |
Revision as of 06:04, 11 January 2014
Short description: | p4@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LSP1_5end |
Coexpression cluster: | C2118_Mesenchymal_Chondrocyte_tenocyte_retina_Synoviocyte_heart_spleen |
Association with transcript: | 18bp_to_ENST00000405957, NM_001013253, uc001luk.2_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | E9PBV6P33241 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 3.03e-12 | 9 |
GAG secreting cell | 6.17e-11 | 9 |
carbohydrate secreting cell | 6.17e-11 | 9 |
chondroblast | 7.49e-09 | 6 |
chondrocyte | 7.49e-09 | 6 |
skeletal muscle myoblast | 1.30e-08 | 4 |
extracellular matrix secreting cell | 1.00e-07 | 15 |
fibrocyte | 2.03e-07 | 3 |
tendon cell | 2.03e-07 | 3 |
stromal cell | 9.11e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.92e-18 | 114 |
dense regular connective tissue | 2.03e-07 | 3 |
tendon | 2.03e-07 | 3 |
regular connective tissue | 2.03e-07 | 3 |