FFCP PHASE1:Hg19::chr19:17571712..17571719,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115861 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25179 | |||
|TSSclassifier=strong | |||
|UniProt=Q96CM4 | |||
|association_with_transcript=5bp_to_ENST00000301944,NM_138454,uc002ngs.2_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_4_at_NXNL1_5end | |||
|id=chr19:17571712..17571719,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.13e-44;3 | |||
|ontology_enrichment_disease=DOID:5409!1.40e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5409;1.38e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.22e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!4.00e-50!2;UBERON:0002757!4.00e-50!2;UBERON:0010134!4.00e-50!2;UBERON:0002784!4.00e-50!2;UBERON:0005408!4.00e-50!2;UBERON:0001899!4.00e-50!2;UBERON:0003296!1.11e-25!4;UBERON:0010133!1.11e-25!4;UBERON:0002336!1.26e-25!1;UBERON:0001018!1.26e-25!1;UBERON:0002473!1.26e-25!1;UBERON:0005340!1.26e-25!1;UBERON:0002316!1.26e-25!1;UBERON:0003544!1.26e-25!1;UBERON:0001020!1.26e-25!1;UBERON:0005970!1.26e-25!1;UBERON:0002437!1.26e-25!1;UBERON:0000966!8.98e-21!5;UBERON:0005388!8.98e-21!5;UBERON:0001802!8.98e-21!5;UBERON:0001894!3.79e-15!7;UBERON:0006222!3.79e-15!7;UBERON:0003056!1.96e-14!61;UBERON:0005162!1.55e-13!2;UBERON:0000122!1.55e-13!2;UBERON:0000970!6.62e-12!20;UBERON:0002104!2.26e-11!21;UBERON:0000020!1.93e-10!23;UBERON:0003075!2.57e-10!86;UBERON:0007284!2.57e-10!86;UBERON:0005743!3.36e-10!86;UBERON:0001032!4.92e-10!24;UBERON:0004456!4.92e-10!24;UBERON:0002346!7.25e-10!90;UBERON:0002780!7.93e-10!41;UBERON:0001890!7.93e-10!41;UBERON:0006240!7.93e-10!41;UBERON:0003080!1.31e-09!42;UBERON:0000073!2.94e-09!94;UBERON:0001016!2.94e-09!94;UBERON:0000955!6.48e-09!69;UBERON:0006238!6.48e-09!69;UBERON:0001017!1.46e-07!82;UBERON:0001049!3.21e-07!57;UBERON:0005068!3.21e-07!57;UBERON:0006241!3.21e-07!57;UBERON:0007135!3.21e-07!57;UBERON:0000033!3.47e-07!123;UBERON:0002616!5.44e-07!59;UBERON:0000153!7.43e-07!129;UBERON:0007811!7.43e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.83e-66;2!UBERON:0002757;2.83e-66;2!UBERON:0010134;2.83e-66;2!UBERON:0005408;2.83e-66;2!UBERON:0001899;2.83e-66;2!UBERON:0003296;8.36e-34;4!UBERON:0010133;8.36e-34;4!UBERON:0002784;8.36e-34;4!UBERON:0000966;3.79e-27;5!UBERON:0005388;3.79e-27;5!UBERON:0001802;3.79e-27;5!UBERON:0001894;7.84e-20;7!UBERON:0000970;1.32e-15;20!UBERON:0002104;6.69e-15;21!UBERON:0000020;1.12e-13;23!UBERON:0001032;3.86e-13;24!UBERON:0004456;3.86e-13;24!UBERON:0000019;6.48e-08;19!UBERON:0000047;6.48e-08;19!UBERON:0004088;6.48e-08;19!UBERON:0010230;6.48e-08;19!UBERON:0001456;3.00e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.53e-66,2;UBERON:0002757,5.53e-66,2;UBERON:0010134,5.53e-66,2;UBERON:0005408,5.53e-66,2;UBERON:0001899,5.53e-66,2;UBERON:0003296,1.17e-33,4;UBERON:0010133,1.17e-33,4;UBERON:0002784,1.17e-33,4;UBERON:0000966,7.58e-23,6;UBERON:0005388,7.58e-23,6;UBERON:0001802,7.58e-23,6;UBERON:0001894,9.49e-20,7;UBERON:0006222,9.49e-20,7;UBERON:0000970,6.53e-15,21;UBERON:0002104,6.53e-15,21;UBERON:0000020,3.78e-13,24;UBERON:0001032,3.78e-13,24;UBERON:0004456,3.78e-13,24;UBERON:0003056,4.72e-09,61;UBERON:0000019,1.42e-07,20;UBERON:0000047,1.42e-07,20;UBERON:0010312,1.42e-07,20;UBERON:0004088,1.42e-07,20;UBERON:0010230,1.42e-07,20;UBERON:0003072,1.42e-07,20;UBERON:0004128,1.42e-07,20;UBERON:0003071,1.42e-07,20;UBERON:0001456,5.74e-07,22;UBERON:0003075,6.96e-07,82;UBERON:0007284,6.96e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.87549926029384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14280734351315,2.01770233331294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21577286947635,1.10609528212909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74851291863573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@NXNL1 | |||
}} |
Revision as of 22:03, 20 January 2014
Short description: | p4@NXNL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NXNL1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 5bp_to_ENST00000301944, NM_138454, uc002ngs.2_5end |
EntrezGene: | NXNL1 |
HGNC: | 25179 |
UniProt: | Q96CM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.53e-66 | 2 |
regional part of epithalamus | 5.53e-66 | 2 |
secretory circumventricular organ | 5.53e-66 | 2 |
circumventricular organ | 5.53e-66 | 2 |
epithalamus | 5.53e-66 | 2 |
gland of diencephalon | 1.17e-33 | 4 |
neuroendocrine gland | 1.17e-33 | 4 |
regional part of diencephalon | 1.17e-33 | 4 |
retina | 7.58e-23 | 6 |
photoreceptor array | 7.58e-23 | 6 |
posterior segment of eyeball | 7.58e-23 | 6 |
diencephalon | 9.49e-20 | 7 |
future diencephalon | 9.49e-20 | 7 |
eye | 6.53e-15 | 21 |
visual system | 6.53e-15 | 21 |
sense organ | 3.78e-13 | 24 |
sensory system | 3.78e-13 | 24 |
entire sense organ system | 3.78e-13 | 24 |
pre-chordal neural plate | 4.72e-09 | 61 |
camera-type eye | 1.42e-07 | 20 |
simple eye | 1.42e-07 | 20 |
immature eye | 1.42e-07 | 20 |
ocular region | 1.42e-07 | 20 |
eyeball of camera-type eye | 1.42e-07 | 20 |
optic cup | 1.42e-07 | 20 |
optic vesicle | 1.42e-07 | 20 |
eye primordium | 1.42e-07 | 20 |
face | 5.74e-07 | 22 |
neural plate | 6.96e-07 | 82 |
presumptive neural plate | 6.96e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.22e-09 | 4 |