FFCP PHASE1:Hg19::chr3:5741033..5741062,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2745 | |||
|description=CAGE_peak_at_chr3:5741033..5741062,- | |||
|id=chr3:5741033..5741062,- | |||
|ontology_enrichment_celltype=CL:0002178!1.36e-12!3;CL:1001319!7.50e-10!1;CL:1000600!7.50e-10!1;CL:0000066!8.19e-10!254;CL:0002322!1.96e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002178;2.35e-23;3!CL:1001319;9.49e-18;1!CL:1000600;9.49e-18;1!CL:1000415;1.86e-09;2!CL:0000322;6.50e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,2.35e-23,3;CL:1001319,1.03e-17,1;CL:1000600,1.03e-17,1;CL:1000415,2.02e-09,2;CL:0000066,1.64e-08,253;CL:0000322,6.50e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!2.28e-26!25;DOID:305!5.38e-20!106;DOID:3493!1.59e-18!2;DOID:4468!6.27e-18!2;DOID:0050687!4.75e-14!143;DOID:3111!5.79e-10!1;DOID:3603!5.79e-10!1;DOID:162!2.09e-08!235;DOID:14566!3.64e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:299;8.84e-42;25!DOID:3493;1.11e-34;2!DOID:4468;1.78e-33;2!DOID:3111;6.78e-18;1!DOID:3603;6.78e-18;1!DOID:3910;9.46e-10;2!DOID:305;1.15e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:299,8.61e-42,25;DOID:3493,1.11e-34,2;DOID:4468,1.64e-33,2;DOID:305,1.37e-21,106;DOID:3111,6.23e-18,1;DOID:3603,6.23e-18,1;DOID:0050687,8.57e-16,143;DOID:3910,9.46e-10,2;DOID:162,3.37e-09,235;DOID:14566,5.49e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0001255!8.80e-18!2;UBERON:0001556!8.80e-18!2;UBERON:0004645!7.50e-10!1;UBERON:0001256!7.50e-10!1;UBERON:0001259!7.50e-10!1;UBERON:0004913!1.36e-09!1;UBERON:0003703!1.36e-09!1;UBERON:0001174!1.36e-09!1;UBERON:0004914!1.36e-09!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;9.49e-18;1!UBERON:0001256;9.49e-18;1!UBERON:0001259;9.49e-18;1!UBERON:0000945;1.97e-14;5!UBERON:0010039;1.97e-14;5!UBERON:0004903;9.46e-10;2!UBERON:0002173;9.46e-10;2!UBERON:0002186;9.46e-10;2!UBERON:0001255;1.51e-09;2!UBERON:0001556;1.51e-09;2!UBERON:0004821;6.50e-07;3!UBERON:0007499;6.50e-07;3!UBERON:0003215;6.50e-07;3!UBERON:0010368;6.50e-07;3!UBERON:0009911;6.50e-07;3!UBERON:0002299;6.50e-07;3!UBERON:0006524;6.50e-07;3!UBERON:0008874;6.50e-07;3!UBERON:0002169;6.50e-07;3!UBERON:0004894;6.50e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,1.03e-17,1;UBERON:0001256,1.03e-17,1;UBERON:0001259,1.03e-17,1;UBERON:0004903,9.46e-10,2;UBERON:0002173,9.46e-10,2;UBERON:0002186,9.46e-10,2;UBERON:0001255,1.57e-09,2;UBERON:0001556,1.57e-09,2;UBERON:0000945,2.25e-09,8;UBERON:0010039,2.25e-09,8;UBERON:0004821,6.50e-07,3;UBERON:0003215,6.50e-07,3;UBERON:0010368,6.50e-07,3;UBERON:0009911,6.50e-07,3;UBERON:0002299,6.50e-07,3;UBERON:0006524,6.50e-07,3;UBERON:0008874,6.50e-07,3;UBERON:0002169,6.50e-07,3;UBERON:0004894,6.50e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,7.11910220819746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68798451622422,2.28525931422807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68333522528221,0,0,5.04316460039371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.52407511158336,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80361822045529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1521313044426,15.4835764727482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03508171527436,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:5741033..5741062,- | |||
}} |
Revision as of 17:07, 21 January 2014
Short description: | p@chr3:5741033..5741062, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:5741033..5741062, - |
Coexpression cluster: | C2745_bronchioalveolar_signet_mucinous_adenocarcinoma_giant_gall_smallcell |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 2.35e-23 | 3 |
bladder cell | 1.03e-17 | 1 |
lower urinary tract cell | 1.03e-17 | 1 |
epithelial cell of gall bladder | 2.02e-09 | 2 |
epithelial cell | 1.64e-08 | 253 |
pneumocyte | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 1.03e-17 | 1 |
wall of urinary bladder | 1.03e-17 | 1 |
mucosa of urinary bladder | 1.03e-17 | 1 |
bronchoalveolar duct junction | 9.46e-10 | 2 |
alveolar duct | 9.46e-10 | 2 |
bronchiole | 9.46e-10 | 2 |
urinary bladder | 1.57e-09 | 2 |
lower urinary tract | 1.57e-09 | 2 |
stomach | 2.25e-09 | 8 |
food storage organ | 2.25e-09 | 8 |
pulmonary alveolus epithelium | 6.50e-07 | 3 |
alveolus | 6.50e-07 | 3 |
pulmonary lobule | 6.50e-07 | 3 |
lobule | 6.50e-07 | 3 |
alveolus of lung | 6.50e-07 | 3 |
alveolar system | 6.50e-07 | 3 |
pulmonary acinus | 6.50e-07 | 3 |
alveolar sac | 6.50e-07 | 3 |
alveolar wall | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 8.61e-42 | 25 |
signet ring cell adenocarcinoma | 1.11e-34 | 2 |
clear cell adenocarcinoma | 1.64e-33 | 2 |
carcinoma | 1.37e-21 | 106 |
cystadenocarcinoma | 6.23e-18 | 1 |
mucinous cystadenocarcinoma | 6.23e-18 | 1 |
cell type cancer | 8.57e-16 | 143 |
lung adenocarcinoma | 9.46e-10 | 2 |
cancer | 3.37e-09 | 235 |
disease of cellular proliferation | 5.49e-09 | 239 |