FFCP PHASE1:Hg19::chr5:43290228..43290243,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=3157 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5007 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-267bp_to_AL050004_5end | |||
|description=CAGE_peak_5_at_HMGCS1_5end | |||
|id=chr5:43290228..43290243,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000064;5.33e-10;3!CL:0000067;5.33e-10;3!CL:0005012;5.33e-10;3!CL:0002504;5.33e-10;3!CL:1000279;5.33e-10;3!CL:0002304;5.33e-10;3!CL:0000594;5.33e-10;3!CL:1000280;5.33e-10;3!CL:0000188;1.72e-08;9!CL:1000415;3.24e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,2.57e-10,3;CL:1000279,2.57e-10,3;CL:1000280,2.57e-10,3;CL:0000594,2.65e-10,3;CL:0000064,3.65e-10,3;CL:0000067,3.65e-10,3;CL:0005012,3.65e-10,3;CL:0002304,3.65e-10,3;CL:0000188,1.65e-08,9;CL:1000415,3.60e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.85e-10!235;DOID:14566!2.78e-09!239;DOID:0050687!7.99e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;5.33e-10;3!UBERON:0001775;5.33e-10;3!UBERON:0000488;1.33e-07;4!UBERON:0001954;3.24e-07;2!UBERON:0003022;3.24e-07;2!UBERON:0002421;3.24e-07;2!UBERON:0002600;3.24e-07;2!UBERON:0002423;4.15e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,3.65e-10,3;UBERON:0001775,3.65e-10,3;UBERON:0000488,1.01e-07,4;UBERON:0001954,1.46e-07,2;UBERON:0003022,1.46e-07,2;UBERON:0002421,1.46e-07,2;UBERON:0002600,1.46e-07,2;UBERON:0009497,3.58e-07,25;UBERON:0000015,3.58e-07,25;UBERON:0002423,3.58e-07,25;UBERON:0006235,3.58e-07,25;UBERON:0004161,3.58e-07,25;UBERON:0005256,3.63e-07,122 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0,0,0.218441372130172,0,1.36142988256051,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.958120975510189,2.13422487311165,0.305653622991805,0.410502947249729,0.236132343941038,0,0,0,0.919421224478927,0,0,0.154934401160603,0.568676929949686,0.293600439334847,0,0,0,0.447830948479849,0,0,0,0,0.242584061187816,0.464858073811369,0,0.309706370895104,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.580418477257168,0,0.622822248995575,0,0,0,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0,0,0,0,0,0,0,0.579297615531196,0,0.670700859703636,0,0,0,0,0,0,1.22895262313288,1.55210578223795,1.75669571386252,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0.267899184852239,0.44905874525234,1.0135033243499,0,0,0,2.63560834872127,0,0,0.496971951695318,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0.67355336034844,0.490385709340376,0,0,0,0.312160076830321,0,1.04614076386261,2.23125547423153,0.647491777472526,0.421352420106746,0,1.84251475967652,0.103325781175765,0,0.494533858557114,0,0,1.5150250255866,0.625592599359821,0,0,0.30648779579902,0.300476117813194,0.453728732640084,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0.365921118388786,0.265059536642971,0.813357600086629,0.310983165046111,0.504641701751257,2.18986415445498,0,0,0,0.464367928031979,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0,0.237270619111097,0.943819157121151,0,1.15424147083917,0,0,0,0,8.87285243752816,0.982827216677626,3.54473944008842,0,0.737930631258681,0.171567810298526,0.98775256867763,0,4.62433273093502,1.01847289674383,0,0,0,0.34779121492523,0,0.288732895522148,0.462985512576611,0.570762456703795,0,0.858486162094873,0.738651018262192,0.234004265139238,0.148631162288728,0,0.839910640994298,0.283550194484773,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0,0,0,0.253991577168676,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0.51336800074665,0,0,1.690605505112,0.531876233169741,0,0,0,0,0.428933980974443,0,0,0.65147236858747,1.77695974371273,0,0,0,0.199945982364114,0,0,2.10833939483032,0,0,0,0,0,0,0.224170287987055,0,0.431255149719035,0.128343036279748,0,0,1.54657762555539,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0.542530047399471,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.521301686808497,0,0.343143423810856,0,0.215714200818617,0.106727557803444,0,0,0,0,0.153461973288062,0.280660094433074,0,0,0,0,0.154209693802656,0,0,0,0,0.846016147141356,0,0.0920809889358963,0,0,0.524497659837696,0,0.770153371044148,0,0,0.422206515571503,0,0.170093705276516,0.647747748306418,0,0,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,1.79515087581472,0,0,0.206082023295445,0.457847324091717,0.247528499761764,0,0,0,0,1.23238893691716,1.22802939780904,0.689182862422653,1.82614416276065,1.59518363305651,1.27839941124151,0.0890320356467374,0.330569830721956,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,3.34942532423701,0.316379424718726,0.953150969619124,0,0,0,0,1.61885211824983,1.37268514868027,1.64937363283961,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,1.31178950409327,0,0.6196469961995,0,1.00387946542836,0.687743287091848,0,0,0,0,0.379473173765715,0,0.288666338176536,0,0,0.470719003883896,0,0,0.443430153536676,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,2.04383492638291,0.28853842595289,0.142283686696828,0.637705090915289,0.399158742865633,0,0.423347165447766,0,0.561594356226918,0,0.313359791546046,0,0,0.321176150207399,0,0.851692475380653,0.343505344755765,0,0.223676107892416,0,0.19538809540204,0.556812347790485,1.23087398947712,0,0.33307196799782,0,0.37428108081644,0,0.242721043499027,0.445773537109913,0,0,0,0,0,0.844016498463076,0,0.659215496907038,0.211125408127993,0,0,0,0,0.246169610922139,0,0.179736702294654,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0.260427761085233,0.787139999965761,0,0.341380344856499,0.508507300585533,0.709163045303809,0.689486746482929,0.291604613383254,0.520874984799877,0,0.120596438625408,0,0,0.295547618953547,1.75508317723178,0,0.278847488557207,0,0,0.922255617552241,0.0897576444097721,0.651884231532048,0,0,0,0,0.156980256395025,0.166211681900156,0.676786981851542,0.588187602953219,0.839107934879214,0.189753732724185,0,1.05499032264014,0.489698424477443,0.141353071433941,0,0,0.176915129006678,1.83309043480088,0,0.123563938946503,0.313265848516366,0.067401132980677,0,0.702793337176017,1.64209310294099,0,0,0.394584402849391,0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| |||
|short_description=p5@HMGCS1 | |||
}} |
Revision as of 05:17, 22 January 2014
Short description: | p5@HMGCS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_HMGCS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -267bp_to_AL050004_5end |
EntrezGene: | HMGCS1 |
HGNC: | 5007 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 2.57e-10 | 3 |
smooth muscle cell of large intestine | 2.57e-10 | 3 |
smooth muscle cell of colon | 2.57e-10 | 3 |
skeletal muscle satellite cell | 2.65e-10 | 3 |
ciliated cell | 3.65e-10 | 3 |
ciliated epithelial cell | 3.65e-10 | 3 |
multi-ciliated epithelial cell | 3.65e-10 | 3 |
non-pigmented ciliary epithelial cell | 3.65e-10 | 3 |
cell of skeletal muscle | 1.65e-08 | 9 |
epithelial cell of gall bladder | 3.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 3.65e-10 | 3 |
ciliary body | 3.65e-10 | 3 |
atypical epithelium | 1.01e-07 | 4 |
Ammon's horn | 1.46e-07 | 2 |
lobe parts of cerebral cortex | 1.46e-07 | 2 |
hippocampal formation | 1.46e-07 | 2 |
limbic lobe | 1.46e-07 | 2 |
epithelium of foregut-midgut junction | 3.58e-07 | 25 |
anatomical boundary | 3.58e-07 | 25 |
hepatobiliary system | 3.58e-07 | 25 |
foregut-midgut junction | 3.58e-07 | 25 |
septum transversum | 3.58e-07 | 25 |
trunk mesenchyme | 3.63e-07 | 122 |