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{{#ask:[[Category:Motif]][[EntrezGene::23394]]}}
SOME TRIVIAL TEST SCRIPTS THAT PARSES EXTERNAL LINKS AND DISPLAY THEM USING ARRAYS


{{FFCP
{{#vardefine:species_temp|{{#switch:9606|9606=Homo_sapiens|10090=Mus_musculus|NA}}}}
|EntrezGene=
{{#var:species_temp}}
|HGNC=42092
{{#vardefine:gene_id|861}}
|UniProt=
{{#if:{{#var:gene_id}}|[http://www.ncbi.nlm.nih.gov/gene/{{#var:gene_id}} EntrezGene:{{#var:gene_id}}] {{#arraydefine:gene_raw_array|HGNC:6473;;MIM:601464;;Ensembl:ENSG00000144218;;HPRD:03272;;Vega:OTTHUMG00000153011|;;}}
|association_with_transcript=129bp_to_ENST00000416931_5end
{{#loop: j
|description=CAGE_peak_1_at_MTND1P23_5end
  | 0         
|id=chr1:564571..564600,+
  | {{#arraysize:gene_raw_array}}
|ontology_enrichment_celltype=
  | <nowiki/>
|ontology_enrichment_celltype_v019=
{{#vardefine:RESOURCE_ID|{{#explode:{{#arrayindex:gene_raw_array| {{#var:j}} }}|:|1}}}}{{#vardefine:RESOURCE|{{#explode:{{#arrayindex:gene_raw_array| {{#var:j}} }}|:|0}} }}{{#vardefine:RESOURCE_URL_BUILD|{{#switch:{{#var:RESOURCE}}|HGNC=http://www.genenames.org/data/hgnc_data.php?hgnc_id={{#var:RESOURCE_ID}}|MIM=http://www.omim.org/entry/{{#var:RESOURCE_ID}}|Ensembl=http://asia.ensembl.org/{{#var:species_temp}}/Gene/Summary?db=core;g={{#var:RESOURCE_ID}}|HPRD=http://www.hprd.org/summary?hprd_id={{#var:RESOURCE_ID}}&isoform_id={{#var:RESOURCE_ID}}_1&isoform_name=Isoform_1|Vega=http://vega.sanger.ac.uk/{{#var:species_temp}}/Info/Index?db=core;g={{#var:RESOURCE_ID}}|NA}}}}
|ontology_enrichment_celltype_v019_2=
[{{#var:RESOURCE_URL_BUILD}} {{#var:RESOURCE}}:{{#var:RESOURCE_ID}}]
|ontology_enrichment_development_v019=UBERON:0005062;4.84e-11;4!UBERON:0007284;4.84e-11;4
}}}}
|ontology_enrichment_disease=
 
|ontology_enrichment_disease_v019=
 
|ontology_enrichment_disease_v019_2=
 
|ontology_enrichment_uberon=UBERON:0001049!2.74e-14!57;UBERON:0005068!2.74e-14!57;UBERON:0006241!2.74e-14!57;UBERON:0007135!2.74e-14!57;UBERON:0001017!3.14e-14!82;UBERON:0000073!6.67e-14!94;UBERON:0001016!6.67e-14!94;UBERON:0005743!6.75e-14!86;UBERON:0002346!2.16e-13!90;UBERON:0002616!1.07e-12!59;UBERON:0003075!2.62e-12!86;UBERON:0007284!2.62e-12!86;UBERON:0000955!7.64e-12!69;UBERON:0006238!7.64e-12!69;UBERON:0002780!5.31e-11!41;UBERON:0001890!5.31e-11!41;UBERON:0006240!5.31e-11!41;UBERON:0000924!7.96e-11!173;UBERON:0006601!7.96e-11!173;UBERON:0003080!1.80e-10!42;UBERON:0002020!3.46e-10!34;UBERON:0003528!3.46e-10!34;UBERON:0004121!5.94e-10!169;UBERON:0007023!1.17e-09!115;UBERON:0001893!2.68e-09!34;UBERON:0002791!3.78e-09!33;UBERON:0001869!1.20e-08!32;UBERON:0000033!2.72e-07!123;UBERON:0000153!3.88e-07!129;UBERON:0007811!3.88e-07!129;UBERON:0003056!8.57e-07!61
{{#arraydefine: colors | red;#FF0000, green;#00FF00, blue;#0000FF }}
|ontology_enrichment_uberon_v019=UBERON:0003978;1.51e-14;3!UBERON:0000946;1.51e-14;3!UBERON:0002791;6.36e-11;32!UBERON:0005090;1.20e-10;2!UBERON:0001630;1.20e-10;2!UBERON:0002771;2.85e-10;2!UBERON:0002133;2.85e-10;2!UBERON:0003528;5.33e-10;34!UBERON:0002020;5.33e-10;34!UBERON:0001893;2.89e-09;34!UBERON:0001869;4.44e-09;32!UBERON:0002619;5.16e-09;22!UBERON:0000956;7.15e-08;25!UBERON:0000203;7.15e-08;25!UBERON:0000200;1.63e-07;6!UBERON:0001950;2.03e-07;20!UBERON:0002780;2.64e-07;41!UBERON:0001890;2.64e-07;41!UBERON:0000073;4.40e-07;53!UBERON:0002616;4.40e-07;53
{{
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.06e-17,114;UBERON:0003978,9.65e-15,3;UBERON:0009751,9.65e-15,3;UBERON:0000946,9.65e-15,3;UBERON:0002523,9.65e-15,3;UBERON:0005983,9.65e-15,3;UBERON:0002165,9.65e-15,3;UBERON:0002062,9.65e-15,3;UBERON:0007280,9.65e-15,3;UBERON:0002346,2.31e-13,86;UBERON:0003075,2.09e-12,82;UBERON:0007284,2.09e-12,82;UBERON:0002791,3.57e-12,32;UBERON:0000073,7.41e-12,53;UBERON:0002616,7.41e-12,53;UBERON:0003528,2.24e-11,34;UBERON:0002020,2.24e-11,34;UBERON:0001893,2.24e-11,34;UBERON:0002780,3.00e-11,41;UBERON:0001890,3.00e-11,41;UBERON:0003080,3.00e-11,41;UBERON:0006240,3.00e-11,41;UBERON:0004797,3.56e-11,7;UBERON:0001049,4.29e-11,56;UBERON:0005068,4.29e-11,56;UBERON:0006241,4.29e-11,56;UBERON:0007135,4.29e-11,56;UBERON:0005090,8.12e-11,2;UBERON:0001630,8.12e-11,2;UBERON:0002133,2.99e-10,2;UBERON:0002771,6.37e-10,2;UBERON:0001869,7.47e-10,32;UBERON:0010371,4.75e-09,104;UBERON:0002619,5.49e-09,22;UBERON:0000955,1.49e-08,68;UBERON:0006238,1.49e-08,68;UBERON:0003056,2.25e-08,61;UBERON:0000956,7.54e-08,25;UBERON:0000203,7.54e-08,25;UBERON:0000200,1.94e-07,6;UBERON:0001950,2.32e-07,20;UBERON:0010314,2.35e-07,132;UBERON:0004121,3.28e-07,171;UBERON:0000924,3.28e-07,171;UBERON:0006601,3.28e-07,171;UBERON:0001016,5.63e-07,89;UBERON:0000025,6.23e-07,192;UBERON:0001017,8.03e-07,81
  #loop: i
|phase1_expression=0.181678379270557,0.856402095563933,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0.164201178899891,0.236132343941038,0,0,0.309632246632152,0.919421224478927,0,0,0,0.426507697462265,0,0,0,0,0.223915474239924,0,0.257575567634187,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0,0.306083892370903,0.641858054152187,0,0,0.797854630486527,0,1.45104619314292,0.56738522469114,0,0.502497330513487,0,0,0,0,0.316462387440884,0.211255286311942,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0.670700859703636,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0.370784442784429,0,0.174129737299267,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,8.48424428152684,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0.298897361103602,0,0,0,2.04154171254893,0.122834317311768,4.33968280938215,0,0.247266929278557,0,0,0,0,1.38532057742091,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0,0,0.252320850875628,0.36497735907583,0,0,0,0.464367928031979,0,0.236613600079688,0,0,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,2.53510069643662,0,1.18157981336281,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0.290633938513962,0.383382679165211,0,0,0.207328115540772,0.432359860250884,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,4.21667878966063,0,0,0,0.144781306667579,0,0,0.112085143993527,0.197030760201927,0,0,0.254094624222463,0,0,0,0.637938751653163,0.749007023947182,0,0,0,0,0,0.415941723061614,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.241718899183244,0.40101294060657,0.368323955743585,0,0,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.27470839445503,0.165018999841176,0.574265537996172,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0.324621940274555,0,0,0,0,0.169291777801603,0.481764225311099,0.605399121573143,0.425846237690326,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0.278406173895242,87.3920532528758,65.1798185127119,0.33307196799782,0,0,0,0.242721043499027,10.1413479692505,0,0,0,0.307160702099232,0,0.281338832821026,0.111308705022906,0,0.422250816255987,0,6.3545300572164,0,0,0.123084805461069,0,9.79565027505863,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0.945550727071745,0,0,0.520874984799877,0,0.964771509003264,1.52581736317083,0.331737779793674,0.591095237907095,0.438770794307945,0,0.139423744278603,0.0769502585037971,0,0.23056390438806,0.269272933229316,0,0,0.0915975934018623,0,0,0,0.332423363800313,0.225595660617181,0.19606253431774,0,0.37950746544837,0.158936578980379,0,0,0.141353071433941,0,0,0.0884575645033392,0,0.296521128680622,0,0,0.067401132980677,1.60515529459758,0.468528891450678,0.182454789215666,0,0.485560759068186,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0,0,0,0.627865836814451,0,0.284609546029793,0.277349346026277,0.347119476670262,0,0,0.17472666824203,0,0.19351266257817,0.146178634172371,0.164230914106418,0,0.176512253383001,0,0,0,0,0.195551382734803,0,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0.288950589901519,2.40168115483916,0.958337652243951,0,0,0,1.39641200636127,1.83328339209347,1.43574604915363,0.798716001995964,0,0,0.134366944973453,0,0,0.236349546921671,0.0824158583811665,0.13480708770837,0.0984274815147488,0,1.59045937961861,0.817220436669454,0.160753148465019,0.137539436597234,0.83088067605837,0.2249738915515,0,0.0607495566580247,0.670869375198532,0.0788057072991982,0,0.105600336519406,0.717149357331379,0,0,0,0.25426853765475,0.542999601753713,0,0,0,20.1947601043374,0.340776043570843,0,0,0,0.387848869084652,0.92562821219883,0.171086837884329,0,0,0,66.2782488555513,0.992332043623902,0,0.121792598380896,0,0,0,0,0,0.157054096250234,1.77213635993397,1.09823638411767,0.751145584238999,1.72022758707021,0.554645257684261,0.0620964029413835,0.415045904808692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  | 0                    <!-- loops start value for {{#var:i}} -->
|short_description=p1@MTND1P23
  | {{#arraysize:colors}} <!-- number of loops -->
|DPIdataset=robustDPI
  | <nowiki/>
|TSSClassifier=weakTSS
* {{
|GencodeV16b_All_biotype_coding_status=ncRNA
    #arraydefine: val | {{#arrayindex:colors | {{#var:i}} }} | ;|
|GencodeV16b_All_gene_biotypes=pseudogene
    }}<span style="color:{{#arrayindex: val | 1}}">{{
|GencodeV16b_All_transcript_biotypes=unprocessed_pseudogene
    #arrayindex: val | 0
|Gencodev16b_All_CPAT_coding_status=no_transcript
    }}</span>
|GencodeV16b_RSEM10_biotype_coding_status=ncRNA
}}
|GencodeV16b_RSEM10_gene_biotypes=pseudogene
 
|GencodeV16b_RSEM10_transcript_biotypes=unprocessed_pseudogene
{{#if:{{#var:gene_id}}|''EntrezGene'':[http://www.ncbi.nlm.nih.gov/gene/{{#var:gene_id}} {{#var:gene_id}}] {{#arraydefine:gene_raw_array|HGNC:6473;;MIM:601464;;Ensembl:ENSG00000144218;;HPRD:03272;;Vega:OTTHUMG00000153011|;;}}
|GencodeV16b_RSEM10_CPAT_coding_status=noncoding
{{#loop: i
|Build2_RSEM10_CPAT_coding_status=noncoding
  | 0         
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA
  | {{#arraysize:gene_raw_array}}
|GencodeV16b_All_Build2_RSEM10_CPAT_agreement=gencode_only_transcript
  | <nowiki/>{{#arraydefine:elements|{{#arrayindex:gene_raw_array|{{#var:i}} }}|:|}}{{#vardefine:RESOURCE_URL_BUILD|{{#switch:{{#arrayindex:elements |0}}|HGNC=http://www.genenames.org/data/hgnc_data.php?hgnc_id={{#arrayindex:elements |1}}|MIM=http://www.omim.org/entry/{{#arrayindex:elements |1}}|Ensembl=http://asia.ensembl.org/{{#var:species_temp}}/Gene/Summary?db=core;g={{#arrayindex:elements |1}}|HPRD=http://www.hprd.org/summary?hprd_id={{#arrayindex:elements |1}}&isoform_id={{#arrayindex:elements |1}}_1&isoform_name=Isoform_1|Vega=http://vega.sanger.ac.uk/{{#var:species_temp}}/Info/Index?db=core;g={{#arrayindex:elements |1}}|MGI=http://www.informatics.jax.org/marker/MGI:{{#arrayindex:elements |1}}|NA}}}}
''{{#arrayindex:elements |0}}'':[{{#var:RESOURCE_URL_BUILD}} {{#arrayindex:elements |1}}]
}}
}}
}}

Latest revision as of 10:10, 10 July 2014

SOME TRIVIAL TEST SCRIPTS THAT PARSES EXTERNAL LINKS AND DISPLAY THEM USING ARRAYS


Homo_sapiens

EntrezGene:861

HGNC:6473

MIM:601464

Ensembl:ENSG00000144218

HPRD:03272

Vega:OTTHUMG00000153011



  • red
  • green
  • blue

EntrezGene:861 HGNC:6473 MIM:601464 Ensembl:ENSG00000144218 HPRD:03272 Vega:OTTHUMG00000153011

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