CL:0002552: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002552 | |||
|is_a=CL:0000057 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=fibroblast of gingiva | |||
|namespace=cell | |||
|obo_creation_date=2011-02-28T05:09:12Z | |||
|part_of=UBERON:0001828 | |part_of=UBERON:0001828 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
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}} | }} | ||
Revision as of 10:28, 12 September 2014
| Name: | fibroblast of gingiva |
|---|---|
| Namespace: | cell |
| Created by: | tmeehan |
| Creation date: | 2011-02-28T05:09:12Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000057(fibroblast) |
|---|---|
| part_of: | UBERON:0001828(gingiva) |
Children
| derives from: | FF:0000063 (human fibroblast of gingiva sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
- 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
- 11924-125H7 (Fibroblast - Gingival, donor7 (control))
- 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
... further results Mouse (Mus musculus)
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
- 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
- 11924-125H7 (Fibroblast - Gingival, donor7 (control))
- 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002552 (fibroblast of gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
