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{{DOID
{{DOID
|id=DOID:1909
|alt_id=
|name=melanoma
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
|xref=MSH:D008545;;NCI:C3224;;SNOMEDCT_2010_1_31:154501005;;SNOMEDCT_2010_1_31:189749008;;SNOMEDCT_2010_1_31:2092003;;SNOMEDCT_2010_1_31:269503007;;SNOMEDCT_2010_1_31:269577007;;SNOMEDCT_2010_1_31:372244006;;UMLS_CUI:C0025202
|is_a=DOID:0050687
|synonym="malignant melanoma" EXACT [NCI2004_11_17:C3224];;"malignant melanoma" EXACT [MTH:475];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005];;"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006];;"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007];;"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003];;"melanoma" EXACT [CSP2005:2020-2434];;"melanoma" EXACT [MTH:NOCODE];;"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1909
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=melanoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="malignant melanoma" EXACT [NCI2004_11_17:C3224];;"malignant melanoma" EXACT [MTH:475];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005];;"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006];;"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007];;"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003];;"melanoma" EXACT [CSP2005:2020-2434];;"melanoma" EXACT [MTH:NOCODE];;"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]
|union_of=
|xref=MSH:D008545;;NCI:C3224;;SNOMEDCT_2010_1_31:154501005;;SNOMEDCT_2010_1_31:189749008;;SNOMEDCT_2010_1_31:2092003;;SNOMEDCT_2010_1_31:269503007;;SNOMEDCT_2010_1_31:269577007;;SNOMEDCT_2010_1_31:372244006;;UMLS_CUI:C0025202
}}
}}

Revision as of 10:33, 12 September 2014

Name:melanoma
Namespace:disease_ontology
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
Xrefs:
links:

MSH:D008545
NCI:C3224
SNOMEDCT_2010_1_31:154501005
SNOMEDCT_2010_1_31:189749008
SNOMEDCT_2010_1_31:2092003
SNOMEDCT_2010_1_31:269503007
SNOMEDCT_2010_1_31:269577007
SNOMEDCT_2010_1_31:372244006

UMLS_CUI:C0025202
Synonyms: "malignant melanoma" EXACT [NCI2004_11_17:C3224]
"malignant melanoma" EXACT [MTH:475]
"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007]
"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005]
"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006]
"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007]
"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003]
"melanoma" EXACT [CSP2005:2020-2434]
"melanoma" EXACT [MTH:NOCODE]
"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050687(cell type cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1909 (melanoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr2:85987891..85987897,+#_4991324b875f661973c7bba16db0bb96p22@ATOH8
3.29e-195FFCP PHASE1:Hg19::chr6:165597276..165597281,-#_4991324b875f661973c7bba16db0bb96p@chr6:165597276..165597281, -
3.29e-195FFCP PHASE1:Hg19::chr2:48274017..48274020,+#_4991324b875f661973c7bba16db0bb96p@chr2:48274017..48274020, +
3.29e-195FFCP PHASE2:Hg19::chr2:85987891..85987897,+#_4991324b875f661973c7bba16db0bb96p22@ATOH8
3.29e-195FFCP PHASE2:Hg19::chr6:165597276..165597281,-#_4991324b875f661973c7bba16db0bb96p@chr6:165597276..165597281, -
3.29e-195FFCP PHASE2:Hg19::chr2:48274017..48274020,+#_4991324b875f661973c7bba16db0bb96p@chr2:48274017..48274020, +
3.29e-195FFCP PHASE1:Hg19::chr7:100806148..100806155,-#_4991324b875f661973c7bba16db0bb96p@chr7:100806148..100806155, -
3.29e-195FFCP PHASE1:Hg19::chr1:144866854..144866864,-#_4991324b875f661973c7bba16db0bb96p62@PDE4DIP
3.29e-195FFCP PHASE2:Hg19::chr7:100806148..100806155,-#_4991324b875f661973c7bba16db0bb96p@chr7:100806148..100806155, -
3.29e-195FFCP PHASE2:Hg19::chr1:144866854..144866864,-#_4991324b875f661973c7bba16db0bb96p62@PDE4DIP
3.29e-195FFCP PHASE1:Hg19::chr7:100808620..100808648,-#_4991324b875f661973c7bba16db0bb96p4@VGF
3.29e-195FFCP PHASE1:Hg19::chr1:144866866..144866877,-#_4991324b875f661973c7bba16db0bb96p61@PDE4DIP
3.29e-195FFCP PHASE2:Hg19::chr1:144866866..144866877,-#_4991324b875f661973c7bba16db0bb96p61@PDE4DIP
3.29e-195FFCP PHASE2:Hg19::chr7:100808620..100808648,-#_4991324b875f661973c7bba16db0bb96p4@VGF
3.29e-195FFCP PHASE1:Hg19::chr2:85987839..85987846,+#_4991324b875f661973c7bba16db0bb96p20@ATOH8
3.29e-195FFCP PHASE2:Hg19::chr2:85987839..85987846,+#_4991324b875f661973c7bba16db0bb96p20@ATOH8
4.61e-131FFCP PHASE2:Hg19::chr7:100807523..100807543,+#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100807523..100807543, +
4.61e-131FFCP PHASE1:Hg19::chr7:100806481..100806491,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100806481..100806491, -
4.61e-131FFCP PHASE2:Hg19::chr7:100806481..100806491,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100806481..100806491, -
4.61e-131FFCP PHASE1:Hg19::chr7:100807886..100807899,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100807886..100807899, -
4.61e-131FFCP PHASE2:Hg19::chr7:100807886..100807899,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100807886..100807899, -
4.61e-131FFCP PHASE1:Hg19::chr7:100808087..100808104,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100808087..100808104, -
4.61e-131FFCP PHASE2:Hg19::chr7:100808087..100808104,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100808087..100808104, -
4.61e-131FFCP PHASE1:Hg19::chr7:100807523..100807543,+#_dba9d9bd8f30f1f235c1d6a3ef45a0f9p@chr7:100807523..100807543, +
8.99e-131FFCP PHASE1:Hg19::chr6:96188999..96189001,-#_cd3ba000c6a887924e4170641ea51addp@chr6:96188999..96189001, -
8.99e-131FFCP PHASE2:Hg19::chr6:96188999..96189001,-#_cd3ba000c6a887924e4170641ea51addp@chr6:96188999..96189001, -
8.99e-131FFCP PHASE1:Hg19::chr19:35890402..35890413,+#_cd3ba000c6a887924e4170641ea51addp@chr19:35890402..35890413, +
8.99e-131FFCP PHASE2:Hg19::chr19:35890402..35890413,+#_cd3ba000c6a887924e4170641ea51addp@chr19:35890402..35890413, +
8.99e-131FFCP PHASE1:Hg19::chr7:100808304..100808313,-#_cd3ba000c6a887924e4170641ea51addp5@VGF
8.99e-131FFCP PHASE2:Hg19::chr7:100808304..100808313,-#_cd3ba000c6a887924e4170641ea51addp5@VGF
1.75e-130FFCP PHASE1:Hg19::chr12:9560067..9560068,-#_c3255f62397c19b67b57f261ef5ab14ap@chr12:9560067..9560068, -
1.75e-130FFCP PHASE2:Hg19::chr12:9560067..9560068,-#_c3255f62397c19b67b57f261ef5ab14ap@chr12:9560067..9560068, -
5.68e-99FFCP PHASE2:Hg19::chr12:100985946..100985951,+#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr12:100985946..100985951, +
5.68e-99FFCP PHASE1:Hg19::chr7:100806199..100806216,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr7:100806199..100806216, -
5.68e-99FFCP PHASE2:Hg19::chr7:100806199..100806216,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr7:100806199..100806216, -
5.68e-99FFCP PHASE1:Hg19::chr12:100985946..100985951,+#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr12:100985946..100985951, +
5.68e-99FFCP PHASE1:Hg19::chr6:165597253..165597261,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr6:165597253..165597261, -
5.68e-99FFCP PHASE2:Hg19::chr6:165597253..165597261,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878p@chr6:165597253..165597261, -
9.38e-99FFCP PHASE1:Hg19::chr22:22890694..22890704,-#_f52e895fba0bb7c54c51a8591a7869e9p8@PRAME
9.38e-99FFCP PHASE2:Hg19::chr22:22890694..22890704,-#_f52e895fba0bb7c54c51a8591a7869e9p8@PRAME
9.38e-99FFCP PHASE1:Hg19::chr6:165597175..165597184,-#_f52e895fba0bb7c54c51a8591a7869e9p@chr6:165597175..165597184, -
9.38e-99FFCP PHASE2:Hg19::chr6:165597175..165597184,-#_f52e895fba0bb7c54c51a8591a7869e9p@chr6:165597175..165597184, -
1.55e-98FFCP PHASE1:Hg19::chr7:100805847..100805856,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100805847..100805856, -
1.55e-98FFCP PHASE1:Hg19::chr1:144866845..144866850,-#_e8baf15439d907e4aa5e89abca2e8206p72@PDE4DIP
1.55e-98FFCP PHASE2:Hg19::chr7:100805847..100805856,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100805847..100805856, -
1.55e-98FFCP PHASE2:Hg19::chr16:34442315..34442323,+#_e8baf15439d907e4aa5e89abca2e8206p@chr16:34442315..34442323, +
1.55e-98FFCP PHASE2:Hg19::chr1:144866845..144866850,-#_e8baf15439d907e4aa5e89abca2e8206p72@PDE4DIP
1.55e-98FFCP PHASE2:Hg19::chr10:7576104..7576107,+#_e8baf15439d907e4aa5e89abca2e8206p@chr10:7576104..7576107, +
1.55e-98FFCP PHASE1:Hg19::chr7:104418730..104418735,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104418730..104418735, -
1.55e-98FFCP PHASE1:Hg19::chr6:134871317..134871322,+#_e8baf15439d907e4aa5e89abca2e8206p@chr6:134871317..134871322, +
1.55e-98FFCP PHASE2:Hg19::chr7:104418730..104418735,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104418730..104418735, -
1.55e-98FFCP PHASE2:Hg19::chr6:134871317..134871322,+#_e8baf15439d907e4aa5e89abca2e8206p@chr6:134871317..134871322, +
1.55e-98FFCP PHASE1:Hg19::chr7:100807335..100807344,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100807335..100807344, +
1.55e-98FFCP PHASE1:Hg19::chr9:22407849..22407853,+#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22407849..22407853, +
1.55e-98FFCP PHASE2:Hg19::chr7:100807335..100807344,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100807335..100807344, +
1.55e-98FFCP PHASE1:Hg19::chr1:144866760..144866765,-#_e8baf15439d907e4aa5e89abca2e8206p78@PDE4DIP
1.55e-98FFCP PHASE1:Hg19::chr7:100806157..100806162,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100806157..100806162, -
1.55e-98FFCP PHASE1:Hg19::chr9:14869264..14869271,-#_e8baf15439d907e4aa5e89abca2e8206p27@FREM1
1.55e-98FFCP PHASE2:Hg19::chr1:144866760..144866765,-#_e8baf15439d907e4aa5e89abca2e8206p78@PDE4DIP
1.55e-98FFCP PHASE2:Hg19::chr9:22407849..22407853,+#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22407849..22407853, +
1.55e-98FFCP PHASE1:Hg19::chr2:234882762..234882776,+#_e8baf15439d907e4aa5e89abca2e8206p@chr2:234882762..234882776, +
1.55e-98FFCP PHASE2:Hg19::chr7:100806157..100806162,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100806157..100806162, -
1.55e-98FFCP PHASE2:Hg19::chr9:14869264..14869271,-#_e8baf15439d907e4aa5e89abca2e8206p27@FREM1
1.55e-98FFCP PHASE1:Hg19::chr9:22216863..22216869,-#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22216863..22216869, -
1.55e-98FFCP PHASE1:Hg19::chr7:104422480..104422488,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104422480..104422488, -
1.55e-98FFCP PHASE1:Hg19::chr10:7576104..7576107,+#_e8baf15439d907e4aa5e89abca2e8206p@chr10:7576104..7576107, +
1.55e-98FFCP PHASE1:Hg19::chr16:34442315..34442323,+#_e8baf15439d907e4aa5e89abca2e8206p@chr16:34442315..34442323, +
1.55e-98FFCP PHASE1:Hg19::chr1:144866830..144866835,-#_e8baf15439d907e4aa5e89abca2e8206p74@PDE4DIP
1.55e-98FFCP PHASE1:Hg19::chr7:29898603..29898606,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:29898603..29898606, +
1.55e-98FFCP PHASE2:Hg19::chr7:104422480..104422488,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104422480..104422488, -
1.55e-98FFCP PHASE2:Hg19::chr1:144866830..144866835,-#_e8baf15439d907e4aa5e89abca2e8206p74@PDE4DIP
1.55e-98FFCP PHASE2:Hg19::chr13:95165454..95165463,-#_e8baf15439d907e4aa5e89abca2e8206p@chr13:95165454..95165463, -
1.55e-98FFCP PHASE1:Hg19::chr9:105414888..105414895,-#_e8baf15439d907e4aa5e89abca2e8206p@chr9:105414888..105414895, -
1.55e-98FFCP PHASE2:Hg19::chr2:234882762..234882776,+#_e8baf15439d907e4aa5e89abca2e8206p@chr2:234882762..234882776, +
1.55e-98FFCP PHASE1:Hg19::chr19:19638023..19638028,+#_e8baf15439d907e4aa5e89abca2e8206p@chr19:19638023..19638028, +
1.55e-98FFCP PHASE1:Hg19::chr13:95165454..95165463,-#_e8baf15439d907e4aa5e89abca2e8206p@chr13:95165454..95165463, -
1.55e-98FFCP PHASE1:Hg19::chr9:22216920..22216921,+#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22216920..22216921, +
1.55e-98FFCP PHASE2:Hg19::chr9:22216863..22216869,-#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22216863..22216869, -
1.55e-98FFCP PHASE1:Hg19::chr7:100805828..100805836,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100805828..100805836, -
1.55e-98FFCP PHASE2:Hg19::chr9:105414888..105414895,-#_e8baf15439d907e4aa5e89abca2e8206p@chr9:105414888..105414895, -
1.55e-98FFCP PHASE2:Hg19::chr19:19638023..19638028,+#_e8baf15439d907e4aa5e89abca2e8206p@chr19:19638023..19638028, +
1.55e-98FFCP PHASE1:Hg19::chr7:104427340..104427345,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104427340..104427345, -
1.55e-98FFCP PHASE1:Hg19::chr1:144866839..144866843,-#_e8baf15439d907e4aa5e89abca2e8206p77@PDE4DIP
1.55e-98FFCP PHASE2:Hg19::chr7:29898603..29898606,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:29898603..29898606, +
1.55e-98FFCP PHASE2:Hg19::chr7:100805828..100805836,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:100805828..100805836, -
1.55e-98FFCP PHASE2:Hg19::chr7:104427340..104427345,-#_e8baf15439d907e4aa5e89abca2e8206p@chr7:104427340..104427345, -
1.55e-98FFCP PHASE2:Hg19::chr14:36536439..36536442,-#_e8baf15439d907e4aa5e89abca2e8206p3@ENST00000546376
1.55e-98FFCP PHASE1:Hg19::chr8:105044082..105044088,-#_e8baf15439d907e4aa5e89abca2e8206p@chr8:105044082..105044088, -
1.55e-98FFCP PHASE2:Hg19::chr1:144866839..144866843,-#_e8baf15439d907e4aa5e89abca2e8206p77@PDE4DIP
1.55e-98FFCP PHASE1:Hg19::chr14:36536439..36536442,-#_e8baf15439d907e4aa5e89abca2e8206p3@ENST00000546376
1.55e-98FFCP PHASE1:Hg19::chr7:80116896..80116907,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:80116896..80116907, +
1.55e-98FFCP PHASE2:Hg19::chr8:105044082..105044088,-#_e8baf15439d907e4aa5e89abca2e8206p@chr8:105044082..105044088, -
1.55e-98FFCP PHASE2:Hg19::chr7:80116896..80116907,+#_e8baf15439d907e4aa5e89abca2e8206p@chr7:80116896..80116907, +
1.55e-98FFCP PHASE2:Hg19::chr9:22216920..22216921,+#_e8baf15439d907e4aa5e89abca2e8206p@chr9:22216920..22216921, +
1.05e-79FFCP PHASE2:Hg19::chr2:12455600..12455618,+#_2304ee776eef98108bc6352a5ab48d32p@chr2:12455600..12455618, +
1.05e-79FFCP PHASE1:Hg19::chr7:100807359..100807373,-#_2304ee776eef98108bc6352a5ab48d32p@chr7:100807359..100807373, -
1.05e-79FFCP PHASE2:Hg19::chr7:100807359..100807373,-#_2304ee776eef98108bc6352a5ab48d32p@chr7:100807359..100807373, -
1.05e-79FFCP PHASE1:Hg19::chr19:35890435..35890446,+#_2304ee776eef98108bc6352a5ab48d32p@chr19:35890435..35890446, +
1.05e-79FFCP PHASE1:Hg19::chr6:165597234..165597249,-#_2304ee776eef98108bc6352a5ab48d32p@chr6:165597234..165597249, -
1.05e-79FFCP PHASE2:Hg19::chr19:35890435..35890446,+#_2304ee776eef98108bc6352a5ab48d32p@chr19:35890435..35890446, +

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