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{{DOID
{{DOID
|id=DOID:4159
|alt_id=
|name=skin cancer
|namespace=disease_ontology
|def="An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/]
|xref=MSH:D012878;;NCI:C2920;;SNOMEDCT_2010_1_31:188143008;;SNOMEDCT_2010_1_31:190107001;;SNOMEDCT_2010_1_31:363511009;;SNOMEDCT_2010_1_31:372130007;;UMLS_CUI:C0007114
|is_a=DOID:0060122
|synonym="CA - skin cancer" EXACT [SNOMEDCT_2005_07_31:363511009];;"cancer of skin" RELATED [];;"malignant neoplasm of skin" EXACT [MTH:NOCODE];;"malignant neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:372130007];;"malignant neoplasm of skin NOS (disorder)" EXACT [SNOMEDCT_2005_07_31:188143008];;"malignant neoplasm of skin, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190107001];;"melanoma and Non-melanoma skin cancer" EXACT [NCI2004_11_17:C2920];;"skin cancer" EXACT [CSP2005:2020-0536]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4159
|is_a=DOID:0060122
|is_obsolete=
|located_in=
|located_in=
|name=skin cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="CA - skin cancer" EXACT [SNOMEDCT_2005_07_31:363511009];;"cancer of skin" RELATED [];;"malignant neoplasm of skin" EXACT [MTH:NOCODE];;"malignant neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:372130007];;"malignant neoplasm of skin NOS (disorder)" EXACT [SNOMEDCT_2005_07_31:188143008];;"malignant neoplasm of skin, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190107001];;"melanoma and Non-melanoma skin cancer" EXACT [NCI2004_11_17:C2920];;"skin cancer" EXACT [CSP2005:2020-0536]
|union_of=
|xref=MSH:D012878;;NCI:C2920;;SNOMEDCT_2010_1_31:188143008;;SNOMEDCT_2010_1_31:190107001;;SNOMEDCT_2010_1_31:363511009;;SNOMEDCT_2010_1_31:372130007;;UMLS_CUI:C0007114
}}
}}

Revision as of 10:35, 12 September 2014

Name:skin cancer
Namespace:disease_ontology
Definition:"An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/]
Xrefs:
links:

MSH:D012878
NCI:C2920
SNOMEDCT_2010_1_31:188143008
SNOMEDCT_2010_1_31:190107001
SNOMEDCT_2010_1_31:363511009
SNOMEDCT_2010_1_31:372130007

UMLS_CUI:C0007114
Synonyms: "CA - skin cancer" EXACT [SNOMEDCT_2005_07_31:363511009]
"cancer of skin" RELATED []
"malignant neoplasm of skin" EXACT [MTH:NOCODE]
"malignant neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:372130007]
"malignant neoplasm of skin NOS (disorder)" EXACT [SNOMEDCT_2005_07_31:188143008]
"malignant neoplasm of skin, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190107001]
"melanoma and Non-melanoma skin cancer" EXACT [NCI2004_11_17:C2920]
"skin cancer" EXACT [CSP2005:2020-0536]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060122(integumentary system cancer)



Children


is a:DOID:3451 (skin carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4159 (skin cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr10:69686723..69686726,-#_c0c52e5ebb335896ee7f6bed5079758fp@chr10:69686723..69686726, -
1.55e-98FFCP PHASE2:Hg19::chr10:69686723..69686726,-#_c0c52e5ebb335896ee7f6bed5079758fp@chr10:69686723..69686726, -
4.52e-50FFCP PHASE1:Hg19::chr7:101448277..101448287,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448277..101448287, +
4.52e-50FFCP PHASE1:Hg19::chr18:22080172..22080183,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr18:22080172..22080183, +
4.52e-50FFCP PHASE2:Hg19::chr7:101448176..101448184,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448176..101448184, +
4.52e-50FFCP PHASE1:Hg19::chr7:101448101..101448113,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448101..101448113, +
4.52e-50FFCP PHASE2:Hg19::chr8:123875147..123875159,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p26@ZHX2
4.52e-50FFCP PHASE1:Hg19::chr7:101448176..101448184,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448176..101448184, +
4.52e-50FFCP PHASE2:Hg19::chr1:153431372..153431378,-#_929b5fb1f7f97697be90cf7fe8d2f1a7p4@S100A7
4.52e-50FFCP PHASE2:Hg19::chr7:101448249..101448254,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448249..101448254, +
4.52e-50FFCP PHASE1:Hg19::chr8:123875147..123875159,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p26@ZHX2
4.52e-50FFCP PHASE2:Hg19::chr7:101448277..101448287,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448277..101448287, +
4.52e-50FFCP PHASE1:Hg19::chr1:153431372..153431378,-#_929b5fb1f7f97697be90cf7fe8d2f1a7p4@S100A7
4.52e-50FFCP PHASE1:Hg19::chr7:101448249..101448254,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448249..101448254, +
4.52e-50FFCP PHASE2:Hg19::chr7:101448101..101448113,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr7:101448101..101448113, +
4.52e-50FFCP PHASE2:Hg19::chr18:22080172..22080183,+#_929b5fb1f7f97697be90cf7fe8d2f1a7p@chr18:22080172..22080183, +
3.61e-34FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_ab3d32f2ac17d53a9a6f8032b509827dp@chr9:97563078..97563086, +
3.61e-34FFCP PHASE2:Hg19::chr20:49047228..49047236,-#_ab3d32f2ac17d53a9a6f8032b509827dp@chr20:49047228..49047236, -
3.61e-34FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_ab3d32f2ac17d53a9a6f8032b509827dp@chr9:97563078..97563086, +
3.61e-34FFCP PHASE1:Hg19::chr20:49047228..49047236,-#_ab3d32f2ac17d53a9a6f8032b509827dp@chr20:49047228..49047236, -
5.04e-34FFCP PHASE2:Hg19::chr1:76127067..76127073,-#_c4ee370f8058ebe1cedca2eb8b439d96p@chr1:76127067..76127073, -
5.04e-34FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_c4ee370f8058ebe1cedca2eb8b439d96p8@SERPINB13
5.04e-34FFCP PHASE1:Hg19::chr21:37376927..37376938,+#_c4ee370f8058ebe1cedca2eb8b439d96p@chr21:37376927..37376938, +
5.04e-34FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_c4ee370f8058ebe1cedca2eb8b439d96p8@SERPINB13
5.04e-34FFCP PHASE1:Hg19::chr3:81671636..81671662,-#_c4ee370f8058ebe1cedca2eb8b439d96p@chr3:81671636..81671662, -
5.04e-34FFCP PHASE1:Hg19::chr17:19648916..19648937,-#_c4ee370f8058ebe1cedca2eb8b439d96p10@ALDH3A1
5.04e-34FFCP PHASE2:Hg19::chr17:19648916..19648937,-#_c4ee370f8058ebe1cedca2eb8b439d96p10@ALDH3A1
5.04e-34FFCP PHASE1:Hg19::chr1:76127067..76127073,-#_c4ee370f8058ebe1cedca2eb8b439d96p@chr1:76127067..76127073, -
5.04e-34FFCP PHASE2:Hg19::chr3:81671636..81671662,-#_c4ee370f8058ebe1cedca2eb8b439d96p@chr3:81671636..81671662, -
5.04e-34FFCP PHASE2:Hg19::chr21:37376927..37376938,+#_c4ee370f8058ebe1cedca2eb8b439d96p@chr21:37376927..37376938, +
7.05e-34FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_190aa90d85b4608c6b3bbd23bb948d40p1@ENST00000457815
7.05e-34FFCP PHASE2:Hg19::chr1:10980427..10980431,-#_190aa90d85b4608c6b3bbd23bb948d40p@chr1:10980427..10980431, -
7.05e-34FFCP PHASE1:Hg19::chr11:101454246..101454255,-#_190aa90d85b4608c6b3bbd23bb948d40p11@TRPC6
7.05e-34FFCP PHASE1:Hg19::chr1:18085798..18085805,+#_190aa90d85b4608c6b3bbd23bb948d40p@chr1:18085798..18085805, +
7.05e-34FFCP PHASE2:Hg19::chr19:51517875..51517889,-#_190aa90d85b4608c6b3bbd23bb948d40p3@AK026045
7.05e-34FFCP PHASE1:Hg19::chr3:177508111..177508119,-#_190aa90d85b4608c6b3bbd23bb948d40p@chr3:177508111..177508119, -
7.05e-34FFCP PHASE2:Hg19::chr11:101454246..101454255,-#_190aa90d85b4608c6b3bbd23bb948d40p11@TRPC6
7.05e-34FFCP PHASE1:Hg19::chr1:10980427..10980431,-#_190aa90d85b4608c6b3bbd23bb948d40p@chr1:10980427..10980431, -
7.05e-34FFCP PHASE2:Hg19::chr2:178179611..178179619,-#_190aa90d85b4608c6b3bbd23bb948d40p4@ENST00000443132
7.05e-34FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_190aa90d85b4608c6b3bbd23bb948d40p1@ENST00000457815
7.05e-34FFCP PHASE2:Hg19::chr13:28542963..28542973,-#_190aa90d85b4608c6b3bbd23bb948d40p1@CU677005
7.05e-34FFCP PHASE2:Hg19::chr17:48072063..48072074,-#_190aa90d85b4608c6b3bbd23bb948d40p5@DLX3
7.05e-34FFCP PHASE1:Hg19::chr2:178179611..178179619,-#_190aa90d85b4608c6b3bbd23bb948d40p4@ENST00000443132
7.05e-34FFCP PHASE1:Hg19::chr19:51517875..51517889,-#_190aa90d85b4608c6b3bbd23bb948d40p3@AK026045
7.05e-34FFCP PHASE1:Hg19::chr13:28542963..28542973,-#_190aa90d85b4608c6b3bbd23bb948d40p1@CU677005
7.05e-34FFCP PHASE2:Hg19::chr1:18085798..18085805,+#_190aa90d85b4608c6b3bbd23bb948d40p@chr1:18085798..18085805, +
7.05e-34FFCP PHASE1:Hg19::chr17:48072063..48072074,-#_190aa90d85b4608c6b3bbd23bb948d40p5@DLX3
7.05e-34FFCP PHASE2:Hg19::chr3:177508111..177508119,-#_190aa90d85b4608c6b3bbd23bb948d40p@chr3:177508111..177508119, -
4.32e-26FFCP PHASE1:Hg19::chr16:55600644..55600645,+#_142c976f3c6c0d873a9f3c1151e1abafp2@CAPNS2
4.32e-26FFCP PHASE2:Hg19::chr16:55600644..55600645,+#_142c976f3c6c0d873a9f3c1151e1abafp2@CAPNS2
4.32e-26FFCP PHASE2:Hg19::chr1:151826151..151826159,-#_142c976f3c6c0d873a9f3c1151e1abafp3@THEM5
4.32e-26FFCP PHASE1:Hg19::chr4:73248974..73249005,+#_142c976f3c6c0d873a9f3c1151e1abafp@chr4:73248974..73249005, +
4.32e-26FFCP PHASE2:Hg19::chr5:1884077..1884085,+#_142c976f3c6c0d873a9f3c1151e1abafp1@ENST00000506335
4.32e-26FFCP PHASE1:Hg19::chr1:151826151..151826159,-#_142c976f3c6c0d873a9f3c1151e1abafp3@THEM5
4.32e-26FFCP PHASE1:Hg19::chr5:1884077..1884085,+#_142c976f3c6c0d873a9f3c1151e1abafp1@ENST00000506335
4.32e-26FFCP PHASE2:Hg19::chr4:73248974..73249005,+#_142c976f3c6c0d873a9f3c1151e1abafp@chr4:73248974..73249005, +
5.56e-26FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr16:66906996..66906997, -
5.56e-26FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr16:66906996..66906997, -
5.56e-26FFCP PHASE2:Hg19::chr8:123875131..123875140,+#_ef8ed1bfde28b412b75d1e71803637dcp25@ZHX2
5.56e-26FFCP PHASE2:Hg19::chr6:152792772..152792787,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr6:152792772..152792787, -
5.56e-26FFCP PHASE2:Hg19::chr12:130647145..130647153,+#_ef8ed1bfde28b412b75d1e71803637dcp3@FZD10
5.56e-26FFCP PHASE2:Hg19::chr1:86921028..86921032,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr1:86921028..86921032, +
5.56e-26FFCP PHASE2:Hg19::chr7:101448204..101448229,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr7:101448204..101448229, +
5.56e-26FFCP PHASE1:Hg19::chr6:152792772..152792787,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr6:152792772..152792787, -
5.56e-26FFCP PHASE2:Hg19::chr3:50367252..50367278,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr3:50367252..50367278, -
5.56e-26FFCP PHASE2:Hg19::chr8:120233966..120233975,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr8:120233966..120233975, +
5.56e-26FFCP PHASE1:Hg19::chr1:86921028..86921032,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr1:86921028..86921032, +
5.56e-26FFCP PHASE1:Hg19::chr8:123875131..123875140,+#_ef8ed1bfde28b412b75d1e71803637dcp25@ZHX2
5.56e-26FFCP PHASE2:Hg19::chr17:77774350..77774360,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr17:77774350..77774360, +
5.56e-26FFCP PHASE1:Hg19::chr7:101448204..101448229,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr7:101448204..101448229, +
5.56e-26FFCP PHASE1:Hg19::chr17:77774350..77774360,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr17:77774350..77774360, +
5.56e-26FFCP PHASE1:Hg19::chr12:130647145..130647153,+#_ef8ed1bfde28b412b75d1e71803637dcp3@FZD10
5.56e-26FFCP PHASE1:Hg19::chr3:50367252..50367278,-#_ef8ed1bfde28b412b75d1e71803637dcp@chr3:50367252..50367278, -
5.56e-26FFCP PHASE1:Hg19::chr8:120233966..120233975,+#_ef8ed1bfde28b412b75d1e71803637dcp@chr8:120233966..120233975, +
7.14e-26FFCP PHASE2:Hg19::chr2:234526341..234526346,+#_6e2858db9e367b309f23bb3e7167514dp1@UGT1A8
7.14e-26FFCP PHASE1:Hg19::chr2:234526341..234526346,+#_6e2858db9e367b309f23bb3e7167514dp1@UGT1A8
9.18e-26FFCP PHASE1:Hg19::chr10:54259346..54259353,+#_4b01a0628f6f445894e8e097dbee7da4p@chr10:54259346..54259353, +
9.18e-26FFCP PHASE1:Hg19::chr1:118570948..118570964,-#_4b01a0628f6f445894e8e097dbee7da4p@chr1:118570948..118570964, -
9.18e-26FFCP PHASE2:Hg19::chr3:136885144..136885147,+#_4b01a0628f6f445894e8e097dbee7da4p@chr3:136885144..136885147, +
9.18e-26FFCP PHASE1:Hg19::chr10:127591699..127591713,-#_4b01a0628f6f445894e8e097dbee7da4p@chr10:127591699..127591713, -
9.18e-26FFCP PHASE2:Hg19::chr4:152117165..152117168,+#_4b01a0628f6f445894e8e097dbee7da4p@chr4:152117165..152117168, +
9.18e-26FFCP PHASE2:Hg19::chr1:153430422..153430443,-#_4b01a0628f6f445894e8e097dbee7da4p3@S100A7
9.18e-26FFCP PHASE1:Hg19::chr10:92754303..92754313,+#_4b01a0628f6f445894e8e097dbee7da4p2@ENST00000412362
9.18e-26FFCP PHASE2:Hg19::chr10:54259346..54259353,+#_4b01a0628f6f445894e8e097dbee7da4p@chr10:54259346..54259353, +
9.18e-26FFCP PHASE2:Hg19::chr5:14437967..14437970,+#_4b01a0628f6f445894e8e097dbee7da4p@chr5:14437967..14437970, +
9.18e-26FFCP PHASE2:Hg19::chr14:65406349..65406358,+#_4b01a0628f6f445894e8e097dbee7da4p@chr14:65406349..65406358, +
9.18e-26FFCP PHASE2:Hg19::chr10:127591699..127591713,-#_4b01a0628f6f445894e8e097dbee7da4p@chr10:127591699..127591713, -
9.18e-26FFCP PHASE2:Hg19::chr10:92754303..92754313,+#_4b01a0628f6f445894e8e097dbee7da4p2@ENST00000412362
9.18e-26FFCP PHASE1:Hg19::chr14:65406349..65406358,+#_4b01a0628f6f445894e8e097dbee7da4p@chr14:65406349..65406358, +
9.18e-26FFCP PHASE1:Hg19::chr3:136885144..136885147,+#_4b01a0628f6f445894e8e097dbee7da4p@chr3:136885144..136885147, +
9.18e-26FFCP PHASE1:Hg19::chr1:153430422..153430443,-#_4b01a0628f6f445894e8e097dbee7da4p3@S100A7
9.18e-26FFCP PHASE1:Hg19::chr4:152117165..152117168,+#_4b01a0628f6f445894e8e097dbee7da4p@chr4:152117165..152117168, +
9.18e-26FFCP PHASE2:Hg19::chr1:118570948..118570964,-#_4b01a0628f6f445894e8e097dbee7da4p@chr1:118570948..118570964, -
9.18e-26FFCP PHASE1:Hg19::chr5:14437967..14437970,+#_4b01a0628f6f445894e8e097dbee7da4p@chr5:14437967..14437970, +
3.11e-21FFCP PHASE1:Hg19::chr1:152572708..152572714,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p1@LCE3C
3.11e-21FFCP PHASE1:Hg19::chr5:11385573..11385583,-#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p47@CTNND2
3.11e-21FFCP PHASE2:Hg19::chr4:75180763..75180777,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p@chr4:75180763..75180777, +
3.11e-21FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p@chr10:5567644..5567657, +
3.11e-21FFCP PHASE2:Hg19::chr17:39674844..39674854,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p@chr17:39674844..39674854, +
3.11e-21FFCP PHASE1:Hg19::chr17:39674844..39674854,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12p@chr17:39674844..39674854, +

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