Personal tools

UBERON:0007497: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0007497
|alt_id=EHDAA2:0003112
|name=developing epithelial placode
|namespace=
|def="A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
|xref=AEO:0000112;;AEO:0000218;;EHDAA2:0003112
|is_a=UBERON:0000485;;UBERON:0001048
|synonym="epithelial placode" EXACT [AEO:0000112]
|comment=
|comment=
|alt_id=EHDAA2:0003112
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007497
|is_a=UBERON:0000485 ;;UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|name=developing epithelial placode
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial placode" EXACT [AEO:0000112]
|union_of=
|xref=AEO:0000112;;AEO:0000218;;EHDAA2:0003112
}}
}}

Revision as of 11:43, 12 September 2014

Name:developing epithelial placode
Definition:"A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
Xrefs:
links:

AEO:0000112
AEO:0000218

EHDAA2:0003112
Synonyms: "epithelial placode" EXACT [AEO:0000112]
Alt_id: EHDAA2:0003112

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0001048(primordium)



Children

is a:UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003894 (liver primordium),UBERON:0004209 (renal vesicle),UBERON:0005081 (ureter ureteric bud),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007497 (developing epithelial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_43170746cb22dd0005a9ffd1c223da97p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_43170746cb22dd0005a9ffd1c223da97p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_43170746cb22dd0005a9ffd1c223da97p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_43170746cb22dd0005a9ffd1c223da97p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_43170746cb22dd0005a9ffd1c223da97p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_43170746cb22dd0005a9ffd1c223da97p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_43170746cb22dd0005a9ffd1c223da97p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_43170746cb22dd0005a9ffd1c223da97p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_43170746cb22dd0005a9ffd1c223da97p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_43170746cb22dd0005a9ffd1c223da97p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_43170746cb22dd0005a9ffd1c223da97p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_43170746cb22dd0005a9ffd1c223da97p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_43170746cb22dd0005a9ffd1c223da97p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_43170746cb22dd0005a9ffd1c223da97p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_43170746cb22dd0005a9ffd1c223da97p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_43170746cb22dd0005a9ffd1c223da97p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_43170746cb22dd0005a9ffd1c223da97p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_43170746cb22dd0005a9ffd1c223da97p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_43170746cb22dd0005a9ffd1c223da97p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_43170746cb22dd0005a9ffd1c223da97p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_43170746cb22dd0005a9ffd1c223da97p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_43170746cb22dd0005a9ffd1c223da97p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_43170746cb22dd0005a9ffd1c223da97p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_43170746cb22dd0005a9ffd1c223da97p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_43170746cb22dd0005a9ffd1c223da97p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_43170746cb22dd0005a9ffd1c223da97p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_43170746cb22dd0005a9ffd1c223da97p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_43170746cb22dd0005a9ffd1c223da97p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_43170746cb22dd0005a9ffd1c223da97p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_43170746cb22dd0005a9ffd1c223da97p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_43170746cb22dd0005a9ffd1c223da97p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_43170746cb22dd0005a9ffd1c223da97p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_43170746cb22dd0005a9ffd1c223da97p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_43170746cb22dd0005a9ffd1c223da97p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_43170746cb22dd0005a9ffd1c223da97p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_43170746cb22dd0005a9ffd1c223da97p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_43170746cb22dd0005a9ffd1c223da97p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_43170746cb22dd0005a9ffd1c223da97p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_43170746cb22dd0005a9ffd1c223da97p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_43170746cb22dd0005a9ffd1c223da97p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_43170746cb22dd0005a9ffd1c223da97p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_43170746cb22dd0005a9ffd1c223da97p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_43170746cb22dd0005a9ffd1c223da97p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_43170746cb22dd0005a9ffd1c223da97p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_43170746cb22dd0005a9ffd1c223da97p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_43170746cb22dd0005a9ffd1c223da97p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_43170746cb22dd0005a9ffd1c223da97p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_43170746cb22dd0005a9ffd1c223da97p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_43170746cb22dd0005a9ffd1c223da97p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_43170746cb22dd0005a9ffd1c223da97p1@Strc

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007497&oldid=3274580"