Personal tools

UBERON:0009662: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0009662
|alt_id=
|name=hindbrain nucleus
|namespace=
|def="Nucleus located within the hindbrain." [ZFIN:curator]
|xref=TAO:0002177;;ZFA:0001658
|is_a=UBERON:0002308
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Nucleus located within the hindbrain." [ZFIN:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009662
|is_a=UBERON:0002308 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=hindbrain nucleus
|namespace=
|obo_creation_date=
|part_of=UBERON:0002028
|part_of=UBERON:0002028
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=TAO:0002177;;ZFA:0001658
}}
}}

Revision as of 11:47, 12 September 2014

Name:hindbrain nucleus
Definition:"Nucleus located within the hindbrain." [ZFIN:curator]
Xrefs:
links:

TAO:0002177

ZFA:0001658

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002308(nucleus of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002028(hindbrain)



Children

is a:UBERON:0002148 (locus ceruleus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009662 (hindbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr2:237146889..237146895,-#_ade460eb38827ef35242589ba584dea2p@chr2:237146889..237146895, -
3.29e-195FFCP PHASE2:Hg19::chr2:237146889..237146895,-#_ade460eb38827ef35242589ba584dea2p@chr2:237146889..237146895, -
4.22e-98FFCP PHASE2:Hg19::chr16:49601912..49601949,-#_59544ad90f0e5c9f8d0b9a6dcbe3fba7p@chr16:49601912..49601949, -
4.22e-98FFCP PHASE1:Hg19::chr16:49601912..49601949,-#_59544ad90f0e5c9f8d0b9a6dcbe3fba7p@chr16:49601912..49601949, -
1.16e-78FFCP PHASE1:Hg19::chr2:108602711..108602722,+#_aeee0bffd880414d4d4ee03b74fed80dp3@SLC5A7
1.16e-78FFCP PHASE2:Hg19::chr2:108602711..108602722,+#_aeee0bffd880414d4d4ee03b74fed80dp3@SLC5A7
2.84e-66FFCP PHASE2:Hg19::chr17:7559346..7559354,+#_8ee071ca8d6d088b201c4c6a0254ca51p@chr17:7559346..7559354, +
2.84e-66FFCP PHASE1:Hg19::chr17:7559346..7559354,+#_8ee071ca8d6d088b201c4c6a0254ca51p@chr17:7559346..7559354, +
3.58e-57FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_1b2c7090021760bb3d81132f0d6b787fp@chr2:234077664..234077672, +
3.58e-57FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_1b2c7090021760bb3d81132f0d6b787fp@chr2:234077664..234077672, +
6.36e-57FFCP PHASE1:Hg19::chr9:87427873..87427884,+#_4689ca8d541c191ef8124561d0abf707p67@NTRK2
6.36e-57FFCP PHASE2:Hg19::chr9:87427873..87427884,+#_4689ca8d541c191ef8124561d0abf707p67@NTRK2
8.47e-57FFCP PHASE1:Hg19::chr11:30751827..30751838,+#_0e3b9383ac1c4a00f607332c1c58dd7cp@chr11:30751827..30751838, +
8.47e-57FFCP PHASE1:Hg19::chr5:75379091..75379100,+#_0e3b9383ac1c4a00f607332c1c58dd7cp6@SV2C
8.47e-57FFCP PHASE2:Hg19::chr11:30751827..30751838,+#_0e3b9383ac1c4a00f607332c1c58dd7cp@chr11:30751827..30751838, +
8.47e-57FFCP PHASE2:Hg19::chr5:75379091..75379100,+#_0e3b9383ac1c4a00f607332c1c58dd7cp6@SV2C
1.13e-56FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_7c35f826c253b1563a0a2a693c32294bp@chr4:117675601..117675614, +
1.13e-56FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_7c35f826c253b1563a0a2a693c32294bp@chr4:117675601..117675614, +
1.5e-56FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_724af14ce81274208a5901ba6e16f670p@chr9:135089670..135089681, -
1.5e-56FFCP PHASE1:Hg19::chr10:133878269..133878278,+#_724af14ce81274208a5901ba6e16f670p@chr10:133878269..133878278, +
1.5e-56FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_724af14ce81274208a5901ba6e16f670p@chr9:135089670..135089681, -
1.5e-56FFCP PHASE2:Hg19::chr10:133878269..133878278,+#_724af14ce81274208a5901ba6e16f670p@chr10:133878269..133878278, +
2.0e-56FFCP PHASE1:Hg19::chr7:94297970..94297982,+#_c3ed30857ff242e572791e8650d571e1p@chr7:94297970..94297982, +
2.0e-56FFCP PHASE2:Hg19::chr7:94297970..94297982,+#_c3ed30857ff242e572791e8650d571e1p@chr7:94297970..94297982, +
1.46e-50FFCP PHASE1:Hg19::chr5:71505323..71505333,+#_6c3dfec5f7a65072282df8b1bbc59833p@chr5:71505323..71505333, +
1.46e-50FFCP PHASE2:Hg19::chr5:71505323..71505333,+#_6c3dfec5f7a65072282df8b1bbc59833p@chr5:71505323..71505333, +
1.88e-50FFCP PHASE2:Hg19::chr18:5577640..5577652,-#_7ebdd3095b1fac5b89422da3f388d9fdp14@EPB41L3
1.88e-50FFCP PHASE1:Hg19::chr18:5577640..5577652,-#_7ebdd3095b1fac5b89422da3f388d9fdp14@EPB41L3
2.74e-50FFCP PHASE2:Hg19::chr4:114303795..114303800,+#_af9d69aa86385ac005378d0c3534ecb4p51@ANK2
2.74e-50FFCP PHASE2:Hg19::chr11:20621167..20621170,+#_af9d69aa86385ac005378d0c3534ecb4p6@SLC6A5
2.74e-50FFCP PHASE1:Hg19::chr4:114303795..114303800,+#_af9d69aa86385ac005378d0c3534ecb4p51@ANK2
2.74e-50FFCP PHASE1:Hg19::chr11:20621167..20621170,+#_af9d69aa86385ac005378d0c3534ecb4p6@SLC6A5
4.0e-50FFCP PHASE2:Hg19::chr22:37213554..37213565,-#_a13b98059e0b06a6ab03a575a52e46f9p4@PVALB
4.0e-50FFCP PHASE1:Hg19::chr22:37213554..37213565,-#_a13b98059e0b06a6ab03a575a52e46f9p4@PVALB
4.52e-50FFCP PHASE1:Hg19::chr2:218873244..218873256,-#_ca9884e8871284a8f932caa1c74246e8p@chr2:218873244..218873256, -
4.52e-50FFCP PHASE1:Hg19::chr6:56820018..56820029,+#_ca9884e8871284a8f932caa1c74246e8p16@BEND6
4.52e-50FFCP PHASE2:Hg19::chr6:56820018..56820029,+#_ca9884e8871284a8f932caa1c74246e8p16@BEND6
4.52e-50FFCP PHASE2:Hg19::chr2:218873244..218873256,-#_ca9884e8871284a8f932caa1c74246e8p@chr2:218873244..218873256, -
5.15e-50FFCP PHASE1:Hg19::chr3:183979132..183979143,-#_1dd4d74eccbd5ead14e0696f321f89e7p8@CAMK2N2
5.15e-50FFCP PHASE2:Hg19::chr3:183979132..183979143,-#_1dd4d74eccbd5ead14e0696f321f89e7p8@CAMK2N2
6.61e-50FFCP PHASE1:Hg19::chr11:81982984..81982991,+#_fff2055ce42a4037838c9ebed9a8a220p@chr11:81982984..81982991, +
6.61e-50FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_fff2055ce42a4037838c9ebed9a8a220p7@SEZ6L
6.61e-50FFCP PHASE2:Hg19::chr11:81982984..81982991,+#_fff2055ce42a4037838c9ebed9a8a220p@chr11:81982984..81982991, +
6.61e-50FFCP PHASE1:Hg19::chr8:82354790..82354800,-#_fff2055ce42a4037838c9ebed9a8a220p@chr8:82354790..82354800, -
6.61e-50FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_fff2055ce42a4037838c9ebed9a8a220p7@SEZ6L
6.61e-50FFCP PHASE2:Hg19::chr8:82354790..82354800,-#_fff2055ce42a4037838c9ebed9a8a220p@chr8:82354790..82354800, -
8.5e-50FFCP PHASE2:Hg19::chr1:160113171..160113182,+#_635c76a521dc3d3dd9ddeb26e8ef67dap@chr1:160113171..160113182, +
8.5e-50FFCP PHASE1:Hg19::chr1:160113171..160113182,+#_635c76a521dc3d3dd9ddeb26e8ef67dap@chr1:160113171..160113182, +
1.4e-49FFCP PHASE1:Hg19::chr6:55039307..55039326,+#_e9ea028236db438b50ed79e2a6907a37p1@HCRTR2
1.4e-49FFCP PHASE2:Hg19::chr6:55039307..55039326,+#_e9ea028236db438b50ed79e2a6907a37p1@HCRTR2
1.8e-49FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_3c4031f5459d29a0114de3b505bb1235p8@R3HCC1
1.8e-49FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_3c4031f5459d29a0114de3b505bb1235p8@R3HCC1
3.19e-45FFCP PHASE1:Hg19::chr15:60296481..60296492,+#_86353d6a4f1eb6343f20170ecd049695p7@FOXB1
3.19e-45FFCP PHASE2:Hg19::chr15:60296481..60296492,+#_86353d6a4f1eb6343f20170ecd049695p7@FOXB1
5.0e-45FFCP PHASE1:Hg19::chr3:58372039..58372043,+#_feeb524ae30f0667c34e4d203efee746p@chr3:58372039..58372043, +
5.0e-45FFCP PHASE2:Hg19::chr3:58372039..58372043,+#_feeb524ae30f0667c34e4d203efee746p@chr3:58372039..58372043, +
7.83e-45FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_984226f8789448bdf78e0a6f6d48bcbdp12@ATP1A2
7.83e-45FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_984226f8789448bdf78e0a6f6d48bcbdp12@ATP1A2
9.79e-45FFCP PHASE1:Hg19::chr8:28748765..28748785,+#_a2e7686aeaa471904eebd1b417622540p10@HMBOX1
9.79e-45FFCP PHASE2:Hg19::chr8:28748765..28748785,+#_a2e7686aeaa471904eebd1b417622540p10@HMBOX1
9.79e-45FFCP PHASE1:Hg19::chr22:29885906..29885916,+#_a2e7686aeaa471904eebd1b417622540p@chr22:29885906..29885916, +
9.79e-45FFCP PHASE2:Hg19::chr22:29885906..29885916,+#_a2e7686aeaa471904eebd1b417622540p@chr22:29885906..29885916, +
2.39e-44FFCP PHASE2:Hg19::chr18:74691000..74691005,-#_53392ba3df8c193334324b1028707466p@chr18:74691000..74691005, -
2.39e-44FFCP PHASE1:Hg19::chr18:74691000..74691005,-#_53392ba3df8c193334324b1028707466p@chr18:74691000..74691005, -
2.39e-44FFCP PHASE2:Hg19::chr17:42983463..42983466,-#_53392ba3df8c193334324b1028707466p45@GFAP
2.39e-44FFCP PHASE1:Hg19::chr17:42983463..42983466,-#_53392ba3df8c193334324b1028707466p45@GFAP
2.98e-44FFCP PHASE1:Hg19::chr7:12544061..12544073,+#_b5c1e5068903bab95658076e7016059bp1@ENST00000424453
2.98e-44FFCP PHASE2:Hg19::chr7:12544061..12544073,+#_b5c1e5068903bab95658076e7016059bp1@ENST00000424453
3.72e-44FFCP PHASE1:Hg19::chr13:70682590..70682601,-#_6011aef72c5f8ff82d088c0f18fedb69p3@KLHL1
3.72e-44FFCP PHASE2:Hg19::chr13:70682590..70682601,-#_6011aef72c5f8ff82d088c0f18fedb69p3@KLHL1
4.65e-44FFCP PHASE1:Hg19::chr8:81639875..81639889,-#_ae1ca5ee0bde93923bc5d7c0ef6201cap@chr8:81639875..81639889, -
4.65e-44FFCP PHASE2:Hg19::chr8:81639875..81639889,-#_ae1ca5ee0bde93923bc5d7c0ef6201cap@chr8:81639875..81639889, -
4.89e-41FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_573016dd4d1bc3281a10ca1cd8241f52p1@TPH2
4.89e-41FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_573016dd4d1bc3281a10ca1cd8241f52p1@TPH2
1.34e-40FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_a3b3f2a48bbc28473194f741c72f9a9cp@chr14:62010202..62010207, -
1.34e-40FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_a3b3f2a48bbc28473194f741c72f9a9cp@chr14:62010202..62010207, -
1.64e-40FFCP PHASE1:Hg19::chr8:24775490..24775500,+#_5768ebf1260016557e9fbd8116b11419p@chr8:24775490..24775500, +
1.64e-40FFCP PHASE2:Hg19::chr8:24775490..24775500,+#_5768ebf1260016557e9fbd8116b11419p@chr8:24775490..24775500, +
2.01e-40FFCP PHASE1:Hg19::chr4:67195068..67195099,-#_36add9fdd6245c9537eb41e7686f6cd3p@chr4:67195068..67195099, -
2.01e-40FFCP PHASE2:Hg19::chr4:67195068..67195099,-#_36add9fdd6245c9537eb41e7686f6cd3p@chr4:67195068..67195099, -
2.46e-40FFCP PHASE1:Hg19::chr1:155291376..155291428,+#_eada8d8a8a1bc3a4d72f41ee16d56e5cp6@RUSC1
2.46e-40FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_eada8d8a8a1bc3a4d72f41ee16d56e5cp@chr19:35789028..35789044, +
2.46e-40FFCP PHASE2:Hg19::chr1:155291376..155291428,+#_eada8d8a8a1bc3a4d72f41ee16d56e5cp6@RUSC1
2.46e-40FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_eada8d8a8a1bc3a4d72f41ee16d56e5cp@chr19:35789028..35789044, +
3.01e-40FFCP PHASE1:Hg19::chr1:24645071..24645074,+#_cedcd658e0ec705e884939eda232b6a2p@chr1:24645071..24645074, +
3.01e-40FFCP PHASE2:Hg19::chr1:24645071..24645074,+#_cedcd658e0ec705e884939eda232b6a2p@chr1:24645071..24645074, +
5.49e-40FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_1ee012352585813184e61cded53b1ebcp@chr2:179739649..179739660, -
5.49e-40FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_1ee012352585813184e61cded53b1ebcp@chr6:33161034..33161047, -
5.49e-40FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_1ee012352585813184e61cded53b1ebcp@chr6:33161034..33161047, -
5.49e-40FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_1ee012352585813184e61cded53b1ebcp@chr2:179739649..179739660, -
6.7e-40FFCP PHASE1:Hg19::chr6:151670422..151670433,+#_c65470d9660412a1028e2820eda87a62p@chr6:151670422..151670433, +
6.7e-40FFCP PHASE2:Hg19::chr6:151670422..151670433,+#_c65470d9660412a1028e2820eda87a62p@chr6:151670422..151670433, +
2.27e-37FFCP PHASE1:Hg19::chr11:121976070..121976081,-#_c463f958cacaa40630feca3eae0662cep4@ENST00000534195
2.27e-37FFCP PHASE2:Hg19::chr11:121976070..121976081,-#_c463f958cacaa40630feca3eae0662cep4@ENST00000534195
2.73e-37FFCP PHASE1:Hg19::chr2:25720514..25720525,-#_2fc79c6399f1fd6c37419e07d4641f4ap16@DTNB
2.73e-37FFCP PHASE2:Hg19::chr2:25720514..25720525,-#_2fc79c6399f1fd6c37419e07d4641f4ap16@DTNB
3.28e-37FFCP PHASE2:Hg19::chr17:42984370..42984375,-#_c61b705d77dbcd8d7da3285e1c4f9243p42@GFAP
3.28e-37FFCP PHASE1:Hg19::chr17:42984370..42984375,-#_c61b705d77dbcd8d7da3285e1c4f9243p42@GFAP
3.28e-37FFCP PHASE2:Hg19::chr17:11144580..11144595,+#_c61b705d77dbcd8d7da3285e1c4f9243p2@SHISA6
3.28e-37FFCP PHASE1:Hg19::chr17:11144580..11144595,+#_c61b705d77dbcd8d7da3285e1c4f9243p2@SHISA6

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009662&oldid=3274648"