CL:0000000: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (4 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
|alt_id= | |alt_id= | ||
| | |comment=The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one). | ||
|created_by= | |created_by= | ||
| | |def="A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000000 | |||
|is_a=GO:0005575 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=FMA:68646;;GO:0005623;;KUPO:0000002;;WBbt:0004017;;XAO:0003012 | |||
}} | }} | ||
Latest revision as of 13:32, 12 September 2014
| Name: | cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah] | ||
| Xrefs: |
| ||
| Comments: | The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one). |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | GO:0005575(cellular_component) |
|---|
Children
| is a: | CL:0000003 (native cell),FF:0000407 (whole cell (cellular fractionation control)),CL:0001034 (cell in vitro),FF:0103714 (VMRC-RCW cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10150-102I6 (medial frontal gyrus, adult, donor10252)
- 10151-102I7 (amygdala, adult, donor10252)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10154-103A1 (thalamus, adult, donor10252)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10157-103A4 (parietal lobe, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
... further results Mouse (Mus musculus)
- 10150-102I6 (medial frontal gyrus, adult, donor10252)
- 10151-102I7 (amygdala, adult, donor10252)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10154-103A1 (thalamus, adult, donor10252)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10157-103A4 (parietal lobe, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000000 (cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
