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{{CL
{{CL
|id=CL:0000242
|alt_id=
|name=Merkel cell
|namespace=cell
|def="A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:A.08.800.550.700.500.425]
|xref=FMA:70548
|is_a=CL:0000123;;CL:0000312
|synonym="Merkel,s cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:A.08.800.550.700.500.425]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000242
|is_a=CL:0000123 ;;CL:0000312
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=Merkel cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002025
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="Merkel's cell" EXACT []
|union_of=
|xref=FMA:70548
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:Merkel cell
Namespace:FANTOM
Definition:"A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:A.08.800.550.700.500.425]
Xrefs:
links:
FMA:70548
Synonyms: "Merkel's cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000123(neuron associated cell (sensu Vertebrata)),CL:0000312(keratinocyte)
part_of:UBERON:0002025(stratum basale of epidermis)



Children


is a:FF:10843-111E6 (merkel cell carcinoma cell line:MKL-1),FF:10844-111E7 (merkel cell carcinoma cell line:MS-1)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000242 (Merkel cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr6:112466463..112466468,+#_42925225e30fd66dbfa0cb43c2585b57p@chr6:112466463..112466468, +
3.29e-195FFCP PHASE1:Hg19::chr19:39401676..39401683,-#_42925225e30fd66dbfa0cb43c2585b57p@chr19:39401676..39401683, -
3.29e-195FFCP PHASE2:Hg19::chr22:27043104..27043111,+#_42925225e30fd66dbfa0cb43c2585b57p27@MIAT
3.29e-195FFCP PHASE1:Hg19::chr20:49727833..49727839,-#_42925225e30fd66dbfa0cb43c2585b57p@chr20:49727833..49727839, -
3.29e-195FFCP PHASE2:Hg19::chr11:79659052..79659060,-#_42925225e30fd66dbfa0cb43c2585b57p@chr11:79659052..79659060, -
3.29e-195FFCP PHASE1:Hg19::chr15:46610951..46610964,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610951..46610964, +
3.29e-195FFCP PHASE2:Hg19::chr19:39401676..39401683,-#_42925225e30fd66dbfa0cb43c2585b57p@chr19:39401676..39401683, -
3.29e-195FFCP PHASE2:Hg19::chr20:49727833..49727839,-#_42925225e30fd66dbfa0cb43c2585b57p@chr20:49727833..49727839, -
3.29e-195FFCP PHASE1:Hg19::chr5:64369097..64369105,+#_42925225e30fd66dbfa0cb43c2585b57p@chr5:64369097..64369105, +
3.29e-195FFCP PHASE1:Hg19::chr1:216595350..216595395,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:216595350..216595395, -
3.29e-195FFCP PHASE1:Hg19::chr1:40770344..40770353,-#_42925225e30fd66dbfa0cb43c2585b57p29@COL9A2
3.29e-195FFCP PHASE1:Hg19::chr1:242843433..242843446,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:242843433..242843446, -
3.29e-195FFCP PHASE1:Hg19::chr4:6356121..6356152,-#_42925225e30fd66dbfa0cb43c2585b57p@chr4:6356121..6356152, -
3.29e-195FFCP PHASE2:Hg19::chr5:64369097..64369105,+#_42925225e30fd66dbfa0cb43c2585b57p@chr5:64369097..64369105, +
3.29e-195FFCP PHASE1:Hg19::chr11:79659013..79659021,-#_42925225e30fd66dbfa0cb43c2585b57p@chr11:79659013..79659021, -
3.29e-195FFCP PHASE2:Hg19::chr15:46610847..46610851,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610847..46610851, +
3.29e-195FFCP PHASE2:Hg19::chr1:216595350..216595395,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:216595350..216595395, -
3.29e-195FFCP PHASE1:Hg19::chr3:66452082..66452087,-#_42925225e30fd66dbfa0cb43c2585b57p@chr3:66452082..66452087, -
3.29e-195FFCP PHASE2:Hg19::chr1:40770344..40770353,-#_42925225e30fd66dbfa0cb43c2585b57p29@COL9A2
3.29e-195FFCP PHASE2:Hg19::chr4:6356121..6356152,-#_42925225e30fd66dbfa0cb43c2585b57p@chr4:6356121..6356152, -
3.29e-195FFCP PHASE2:Hg19::chr1:242843433..242843446,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:242843433..242843446, -
3.29e-195FFCP PHASE1:Hg19::chr9:139089234..139089236,-#_42925225e30fd66dbfa0cb43c2585b57p@chr9:139089234..139089236, -
3.29e-195FFCP PHASE1:Hg19::chr9:33719626..33719633,-#_42925225e30fd66dbfa0cb43c2585b57p@chr9:33719626..33719633, -
3.29e-195FFCP PHASE1:Hg19::chr11:79659052..79659060,-#_42925225e30fd66dbfa0cb43c2585b57p@chr11:79659052..79659060, -
3.29e-195FFCP PHASE1:Hg19::chr15:46610847..46610851,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610847..46610851, +
3.29e-195FFCP PHASE2:Hg19::chr3:66452082..66452087,-#_42925225e30fd66dbfa0cb43c2585b57p@chr3:66452082..66452087, -
3.29e-195FFCP PHASE2:Hg19::chr15:46610897..46610904,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610897..46610904, +
3.29e-195FFCP PHASE1:Hg19::chr1:216196797..216196801,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:216196797..216196801, -
3.29e-195FFCP PHASE2:Hg19::chr9:33719626..33719633,-#_42925225e30fd66dbfa0cb43c2585b57p@chr9:33719626..33719633, -
3.29e-195FFCP PHASE2:Hg19::chr9:139089234..139089236,-#_42925225e30fd66dbfa0cb43c2585b57p@chr9:139089234..139089236, -
3.29e-195FFCP PHASE1:Hg19::chr6:112466463..112466468,+#_42925225e30fd66dbfa0cb43c2585b57p@chr6:112466463..112466468, +
3.29e-195FFCP PHASE1:Hg19::chr22:27043104..27043111,+#_42925225e30fd66dbfa0cb43c2585b57p27@MIAT
3.29e-195FFCP PHASE2:Hg19::chr1:216196797..216196801,-#_42925225e30fd66dbfa0cb43c2585b57p@chr1:216196797..216196801, -
3.29e-195FFCP PHASE2:Hg19::chr11:79659013..79659021,-#_42925225e30fd66dbfa0cb43c2585b57p@chr11:79659013..79659021, -
3.29e-195FFCP PHASE1:Hg19::chr15:46610897..46610904,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610897..46610904, +
3.29e-195FFCP PHASE2:Hg19::chr15:46610951..46610964,+#_42925225e30fd66dbfa0cb43c2585b57p@chr15:46610951..46610964, +
4.61e-131FFCP PHASE2:Hg19::chr16:53653257..53653264,-#_c533b71977d828eb091da96843abc32bp@chr16:53653257..53653264, -
4.61e-131FFCP PHASE2:Hg19::chr9:33719660..33719671,-#_c533b71977d828eb091da96843abc32bp@chr9:33719660..33719671, -
4.61e-131FFCP PHASE2:Hg19::chr11:128634589..128634606,+#_c533b71977d828eb091da96843abc32bp14@FLI1
4.61e-131FFCP PHASE1:Hg19::chr5:64369069..64369083,+#_c533b71977d828eb091da96843abc32bp@chr5:64369069..64369083, +
4.61e-131FFCP PHASE2:Hg19::chr5:64369069..64369083,+#_c533b71977d828eb091da96843abc32bp@chr5:64369069..64369083, +
4.61e-131FFCP PHASE1:Hg19::chr1:155048171..155048179,+#_c533b71977d828eb091da96843abc32bp@chr1:155048171..155048179, +
4.61e-131FFCP PHASE1:Hg19::chr9:139096224..139096231,-#_c533b71977d828eb091da96843abc32bp@chr9:139096224..139096231, -
4.61e-131FFCP PHASE1:Hg19::chr16:53653257..53653264,-#_c533b71977d828eb091da96843abc32bp@chr16:53653257..53653264, -
4.61e-131FFCP PHASE2:Hg19::chr1:155048171..155048179,+#_c533b71977d828eb091da96843abc32bp@chr1:155048171..155048179, +
4.61e-131FFCP PHASE1:Hg19::chr5:145722450..145722456,+#_c533b71977d828eb091da96843abc32bp@chr5:145722450..145722456, +
4.61e-131FFCP PHASE2:Hg19::chr9:139096224..139096231,-#_c533b71977d828eb091da96843abc32bp@chr9:139096224..139096231, -
4.61e-131FFCP PHASE1:Hg19::chr1:155048200..155048207,+#_c533b71977d828eb091da96843abc32bp@chr1:155048200..155048207, +
4.61e-131FFCP PHASE2:Hg19::chr12:65175253..65175283,-#_c533b71977d828eb091da96843abc32bp@chr12:65175253..65175283, -
4.61e-131FFCP PHASE1:Hg19::chr11:128634589..128634606,+#_c533b71977d828eb091da96843abc32bp14@FLI1
4.61e-131FFCP PHASE2:Hg19::chr5:145722450..145722456,+#_c533b71977d828eb091da96843abc32bp@chr5:145722450..145722456, +
4.61e-131FFCP PHASE2:Hg19::chr1:155048200..155048207,+#_c533b71977d828eb091da96843abc32bp@chr1:155048200..155048207, +
4.61e-131FFCP PHASE1:Hg19::chr22:35921483..35921490,-#_c533b71977d828eb091da96843abc32bp@chr22:35921483..35921490, -
4.61e-131FFCP PHASE1:Hg19::chr12:65175253..65175283,-#_c533b71977d828eb091da96843abc32bp@chr12:65175253..65175283, -
4.61e-131FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_c533b71977d828eb091da96843abc32bp@chr9:33719660..33719671, -
4.61e-131FFCP PHASE2:Hg19::chr22:35921483..35921490,-#_c533b71977d828eb091da96843abc32bp@chr22:35921483..35921490, -
8.99e-131FFCP PHASE1:Hg19::chr5:145724642..145724652,+#_9cd7e4ee856300d96d5d2992873f549cp@chr5:145724642..145724652, +
8.99e-131FFCP PHASE1:Hg19::chr2:3152671..3152679,-#_9cd7e4ee856300d96d5d2992873f549cp@chr2:3152671..3152679, -
8.99e-131FFCP PHASE2:Hg19::chr1:216286476..216286479,-#_9cd7e4ee856300d96d5d2992873f549cp@chr1:216286476..216286479, -
8.99e-131FFCP PHASE2:Hg19::chr5:145724642..145724652,+#_9cd7e4ee856300d96d5d2992873f549cp@chr5:145724642..145724652, +
8.99e-131FFCP PHASE2:Hg19::chr2:3152671..3152679,-#_9cd7e4ee856300d96d5d2992873f549cp@chr2:3152671..3152679, -
8.99e-131FFCP PHASE2:Hg19::chr18:13165683..13165695,-#_9cd7e4ee856300d96d5d2992873f549cp@chr18:13165683..13165695, -
8.99e-131FFCP PHASE2:Hg19::chr11:31312513..31312524,-#_9cd7e4ee856300d96d5d2992873f549cp@chr11:31312513..31312524, -
8.99e-131FFCP PHASE1:Hg19::chr20:49727891..49727898,-#_9cd7e4ee856300d96d5d2992873f549cp@chr20:49727891..49727898, -
8.99e-131FFCP PHASE1:Hg19::chr12:54786411..54786421,-#_9cd7e4ee856300d96d5d2992873f549cp@chr12:54786411..54786421, -
8.99e-131FFCP PHASE2:Hg19::chr20:49727891..49727898,-#_9cd7e4ee856300d96d5d2992873f549cp@chr20:49727891..49727898, -
8.99e-131FFCP PHASE1:Hg19::chr5:14742023..14742037,-#_9cd7e4ee856300d96d5d2992873f549cp@chr5:14742023..14742037, -
8.99e-131FFCP PHASE1:Hg19::chr20:31116333..31116338,-#_9cd7e4ee856300d96d5d2992873f549cp@chr20:31116333..31116338, -
8.99e-131FFCP PHASE2:Hg19::chr12:54786411..54786421,-#_9cd7e4ee856300d96d5d2992873f549cp@chr12:54786411..54786421, -
8.99e-131FFCP PHASE1:Hg19::chr5:145724630..145724641,+#_9cd7e4ee856300d96d5d2992873f549cp@chr5:145724630..145724641, +
8.99e-131FFCP PHASE2:Hg19::chr5:14742023..14742037,-#_9cd7e4ee856300d96d5d2992873f549cp@chr5:14742023..14742037, -
8.99e-131FFCP PHASE1:Hg19::chr11:31312513..31312524,-#_9cd7e4ee856300d96d5d2992873f549cp@chr11:31312513..31312524, -
8.99e-131FFCP PHASE1:Hg19::chr18:13165683..13165695,-#_9cd7e4ee856300d96d5d2992873f549cp@chr18:13165683..13165695, -
8.99e-131FFCP PHASE2:Hg19::chr20:31116333..31116338,-#_9cd7e4ee856300d96d5d2992873f549cp@chr20:31116333..31116338, -
8.99e-131FFCP PHASE2:Hg19::chr5:145724630..145724641,+#_9cd7e4ee856300d96d5d2992873f549cp@chr5:145724630..145724641, +
8.99e-131FFCP PHASE1:Hg19::chr1:216286476..216286479,-#_9cd7e4ee856300d96d5d2992873f549cp@chr1:216286476..216286479, -
1.75e-130FFCP PHASE1:Hg19::chr7:1327587..1327610,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr7:1327587..1327610, +
1.75e-130FFCP PHASE2:Hg19::chr7:1327587..1327610,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr7:1327587..1327610, +
1.75e-130FFCP PHASE1:Hg19::chr7:1327611..1327629,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr7:1327611..1327629, +
1.75e-130FFCP PHASE2:Hg19::chr7:1327611..1327629,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr7:1327611..1327629, +
1.75e-130FFCP PHASE1:Hg19::chr3:77121235..77121260,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr3:77121235..77121260, +
1.75e-130FFCP PHASE2:Hg19::chr3:77121235..77121260,+#_016ef96a7dc83fcc5aaa78cfe38f0463p@chr3:77121235..77121260, +
5.68e-99FFCP PHASE1:Hg19::chr1:160342039..160342041,+#_3840d06f724c32ac47c506c2f8223911p@chr1:160342039..160342041, +
5.68e-99FFCP PHASE2:Hg19::chr1:11751529..11751536,-#_3840d06f724c32ac47c506c2f8223911p10@MAD2L2
5.68e-99FFCP PHASE2:Hg19::chr5:64369050..64369067,+#_3840d06f724c32ac47c506c2f8223911p@chr5:64369050..64369067, +
5.68e-99FFCP PHASE2:Hg19::chr7:155363439..155363470,-#_3840d06f724c32ac47c506c2f8223911p@chr7:155363439..155363470, -
5.68e-99FFCP PHASE2:Hg19::chr1:160342039..160342041,+#_3840d06f724c32ac47c506c2f8223911p@chr1:160342039..160342041, +
5.68e-99FFCP PHASE1:Hg19::chr9:139091385..139091433,-#_3840d06f724c32ac47c506c2f8223911p@chr9:139091385..139091433, -
5.68e-99FFCP PHASE1:Hg19::chr11:64834320..64834330,-#_3840d06f724c32ac47c506c2f8223911p@chr11:64834320..64834330, -
5.68e-99FFCP PHASE1:Hg19::chr4:94751839..94751843,+#_3840d06f724c32ac47c506c2f8223911p@chr4:94751839..94751843, +
5.68e-99FFCP PHASE1:Hg19::chr5:145718596..145718607,+#_3840d06f724c32ac47c506c2f8223911p2@POU4F3
5.68e-99FFCP PHASE1:Hg19::chr6:129930311..129930322,-#_3840d06f724c32ac47c506c2f8223911p@chr6:129930311..129930322, -
5.68e-99FFCP PHASE2:Hg19::chr4:94751839..94751843,+#_3840d06f724c32ac47c506c2f8223911p@chr4:94751839..94751843, +
5.68e-99FFCP PHASE2:Hg19::chr9:139091385..139091433,-#_3840d06f724c32ac47c506c2f8223911p@chr9:139091385..139091433, -
5.68e-99FFCP PHASE2:Hg19::chr5:145718596..145718607,+#_3840d06f724c32ac47c506c2f8223911p2@POU4F3
5.68e-99FFCP PHASE1:Hg19::chr3:182129895..182129901,-#_3840d06f724c32ac47c506c2f8223911p@chr3:182129895..182129901, -
5.68e-99FFCP PHASE2:Hg19::chr6:129930311..129930322,-#_3840d06f724c32ac47c506c2f8223911p@chr6:129930311..129930322, -
5.68e-99FFCP PHASE1:Hg19::chr9:139096259..139096268,-#_3840d06f724c32ac47c506c2f8223911p@chr9:139096259..139096268, -
5.68e-99FFCP PHASE2:Hg19::chr3:182129895..182129901,-#_3840d06f724c32ac47c506c2f8223911p@chr3:182129895..182129901, -
5.68e-99FFCP PHASE2:Hg19::chr11:64834320..64834330,-#_3840d06f724c32ac47c506c2f8223911p@chr11:64834320..64834330, -

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