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{{CL
{{CL
|id=CL:0000708
|alt_id=
|name=leptomeningeal cell
|namespace=cell
|def="Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb]
|xref=
|is_a=CL:0000327
|synonym="leptomemingeal cell" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000708
|is_a=CL:0000327 ;;CL:0002319
|is_obsolete=
|located_in=
|located_in=
|name=leptomeningeal cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003210
|part_of=UBERON:0003210
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="leptomemingeal cell" RELATED []
|union_of=
|xref=
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:leptomeningeal cell
Namespace:FANTOM
Definition:"Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb]
Synonyms: "leptomemingeal cell" RELATED []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000327(extracellular matrix secreting cell),CL:0002319(neural cell)
part_of:UBERON:0003210(blood-cerebrospinal fluid barrier)



Children


derives from:FF:0000091 (human leptomeningeal cell sample),FF:0000111 (mouse leptomeningeal cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000708 (leptomeningeal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337bp@chr11:60680237..60680241, +
8.98e-131FFCP PHASE2:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337bp@chr11:60680237..60680241, +
3.48e-118FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecdep@chr11:60680219..60680235, +
3.48e-118FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecdep@chr11:60680219..60680235, +
5.69e-99FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3cap@chr7:107720432..107720443, +
5.69e-99FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3cap@chr7:107720432..107720443, +
6.24e-88FFCP PHASE1:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888p35@CYFIP2
6.24e-88FFCP PHASE2:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888p35@CYFIP2
7.51e-74FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5p7@FLVCR2
7.51e-74FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5p7@FLVCR2
2.39e-66FFCP PHASE1:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343p@chr11:60680267..60680270, +
2.39e-66FFCP PHASE2:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343p@chr11:60680267..60680270, +
1.68e-58FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23p6@Cdkn2a
1.68e-58FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23p6@Cdkn2a
4.17e-55FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1p22@ARNT2
4.17e-55FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1p22@ARNT2
1.59e-50FFCP PHASE1:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377p@chr6:45618665..45618676, +
1.59e-50FFCP PHASE2:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377p@chr6:45618665..45618676, +
4.73e-47FFCP PHASE1:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8p20@ARNT2
4.73e-47FFCP PHASE2:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8p20@ARNT2
7.81e-45FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0p@chr3:146517344..146517356, +
7.81e-45FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0p@chr3:146517344..146517356, +
2.97e-44FFCP PHASE1:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910p@chr5:92498209..92498218, -
2.97e-44FFCP PHASE2:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910p@chr5:92498209..92498218, -
7.52e-44FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32p@chr4:138749194..138749201, +
7.52e-44FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32p@chr4:138749194..138749201, +
1.24e-43FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7p1@Il11
1.24e-43FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7p1@Il11
1.14e-40FFCP PHASE2:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495p7@MPP4
1.14e-40FFCP PHASE1:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495p7@MPP4
6.35e-36FFCP PHASE2:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1cp@chr11:100820213..100820220, -
6.35e-36FFCP PHASE1:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1cp@chr11:100820213..100820220, -
7.74e-36FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05p@chr17:1013251..1013277, -
7.74e-36FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05p@chr17:1013251..1013277, -
1.24e-35FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7p10@SYNJ2
1.24e-35FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7p10@SYNJ2
2.13e-35FFCP PHASE2:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79p34@Sept9
2.13e-35FFCP PHASE1:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79p34@Sept9
2.25e-35FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cefp@chr3:147088197..147088208, -
2.25e-35FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cefp@chr3:147088197..147088208, -
2.45e-34FFCP PHASE1:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5p3@DENND2A
2.45e-34FFCP PHASE2:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5p3@DENND2A
1.09e-30FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15p@chr11:60680190..60680212, +
1.09e-30FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15p@chr11:60680190..60680212, +
4.77e-30FFCP PHASE2:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625ap@chr2:119000878..119000908, -
4.77e-30FFCP PHASE2:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625ap4@Adra2a
4.77e-30FFCP PHASE1:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625ap@chr2:119000878..119000908, -
4.77e-30FFCP PHASE1:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625ap4@Adra2a
5.61e-30FFCP PHASE1:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1aep@chr17:48346424..48346435, +
5.61e-30FFCP PHASE2:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1aep@chr17:48346424..48346435, +
7.41e-26FFCP PHASE2:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3p@chrX:136649632..136649652, +
7.41e-26FFCP PHASE1:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3p@chrX:136649632..136649652, +
1.35e-25FFCP PHASE1:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470p@chr5:28144366..28144367, -
1.35e-25FFCP PHASE2:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470p6@Adra2a
1.35e-25FFCP PHASE2:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470p@chr5:28144366..28144367, -
1.35e-25FFCP PHASE1:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470p6@Adra2a
2.99e-25FFCP PHASE1:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8dp8@MPP4
2.99e-25FFCP PHASE2:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8dp8@MPP4
4.87e-25FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157p30@PRKCH
4.87e-25FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157p30@PRKCH
8.75e-25FFCP PHASE1:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938p@chr3:147130332..147130352, +
8.75e-25FFCP PHASE2:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938p@chr3:147130332..147130352, +
1.03e-24FFCP PHASE1:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cbp3@ZIC4
1.03e-24FFCP PHASE2:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cbp3@ZIC4
9.24e-24FFCP PHASE1:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25p@chr3:147131185..147131202, +
9.24e-24FFCP PHASE2:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25p@chr3:147131185..147131202, +
2.62e-23FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078p@chr10:74020629..74020634, -
2.62e-23FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078p@chr10:74020629..74020634, -
3.06e-23FFCP PHASE2:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2dep@chr5:136364908..136364912, +
3.06e-23FFCP PHASE1:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2dep@chr5:136364908..136364912, +
3.27e-23FFCP PHASE1:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1bp5@AB464362
3.27e-23FFCP PHASE2:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1bp5@AB464362
3.27e-23FFCP PHASE1:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1bp10@MPP4
3.27e-23FFCP PHASE2:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1bp10@MPP4
4.61e-23FFCP PHASE2:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921ap@chr10:69902750..69902779, +
4.61e-23FFCP PHASE1:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921ap@chr10:69902750..69902779, +
5.15e-23FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87dp5@CMKLR1
5.15e-23FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87dp5@CMKLR1
6.44e-23FFCP PHASE1:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988p7@ZIC4
6.44e-23FFCP PHASE2:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988p7@ZIC4
9.5e-23FFCP PHASE2:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659p4@Mrpl14
9.5e-23FFCP PHASE1:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659p4@Mrpl14
9.47e-22FFCP PHASE1:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4fp5@CPXM1
9.47e-22FFCP PHASE2:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4fp5@CPXM1
3.63e-21FFCP PHASE1:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8ep@chr10:112207187..112207199, -
3.63e-21FFCP PHASE2:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8ep@chr10:112207187..112207199, -
6.43e-21FFCP PHASE2:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98cap5@Best1, p5@LOC100504840
6.43e-21FFCP PHASE1:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98cap5@Best1, p5@LOC100504840
8.07e-21FFCP PHASE1:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2bp@chr2:35140218..35140229, +
8.07e-21FFCP PHASE2:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2bp@chr2:35140218..35140229, +
8.47e-21FFCP PHASE1:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700fp@chr6:151562148..151562162, +
8.47e-21FFCP PHASE2:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700fp@chr6:151562148..151562162, +
1.74e-20FFCP PHASE1:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317p11@ZIC1
1.74e-20FFCP PHASE2:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317p11@ZIC1
2.05e-20FFCP PHASE1:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631p5@GLDC
2.05e-20FFCP PHASE2:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631p5@GLDC
3.01e-20FFCP PHASE2:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348p@chr3:147131775..147131783, +
3.01e-20FFCP PHASE1:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348p@chr3:147131775..147131783, +
3.91e-20FFCP PHASE1:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6p@chr11:86449013..86449037, -
3.91e-20FFCP PHASE2:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6p@chr11:86449013..86449037, -

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