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{{CL
{{CL
|id=CL:0001029
|alt_id=
|name=common dendritic progenitor
|namespace=efo
|def="Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:16551251, PMID:17922016, PMID:19286519]
|xref=
|is_a=CL:0002031
|synonym="CDP" EXACT [PMID:21219184];;"common dendritic precursor" EXACT [];;"pro-DCs" EXACT [PMID:21219184]
|comment=Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID: 19243617).
|comment=Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID: 19243617).
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:16551251, PMID:17922016, PMID:19286519]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0002009
|develops_from=CL:0002009
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0001029
|is_a=CL:0000763 ;;CL:0001019
|is_obsolete=
|located_in=
|located_in=
|name=common dendritic progenitor
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="CDP" EXACT [PMID:21219184];;"common dendritic precursor" EXACT [];;"pro-DCs" EXACT [PMID:21219184]
|union_of=
|xref=
}}
}}

Latest revision as of 16:39, 12 September 2014

Name:common dendritic progenitor
Namespace:FANTOM
Definition:"Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:16551251, PMID:17922016, PMID:19286519]
Synonyms: "CDP" EXACT [PMID:21219184]
"common dendritic precursor" EXACT []
"pro-DCs" EXACT [PMID:21219184]
Comments:Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID: 19243617).


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000763(myeloid cell),CL:0001019(CD115-positive monocyte OR common dendritic progenitor)
develops_from:CL:0002009(macrophage dendritic cell progenitor)



Children


develops from:CL:0000840 (immature conventional dendritic cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0001029 (common dendritic progenitor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.64e-136FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_63b95b3cf1d84604e92b44aa499c84bfp5@FCER1A
2.64e-136FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_63b95b3cf1d84604e92b44aa499c84bfp5@FCER1A
3.49e-136FFCP PHASE2:Hg19::chr1:159272420..159272431,+#_cd5b0b4ec4ebe1261012f563787d6bc8p3@FCER1A
3.49e-136FFCP PHASE1:Hg19::chr1:159272420..159272431,+#_cd5b0b4ec4ebe1261012f563787d6bc8p3@FCER1A
4.61e-136FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_e03ccfa6f237bb10cff002d1751d1ad1p@chr2:61080954..61080964, +
4.61e-136FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_e03ccfa6f237bb10cff002d1751d1ad1p@chr2:61080954..61080964, +
1.07e-130FFCP PHASE1:Hg19::chr4:16267477..16267486,-#_51e723bc34caba2e0282841357efaf78p@chr4:16267477..16267486, -
1.07e-130FFCP PHASE1:Hg19::chr17:6982145..6982156,-#_51e723bc34caba2e0282841357efaf78p1@CU691636
1.07e-130FFCP PHASE2:Hg19::chr17:6982145..6982156,-#_51e723bc34caba2e0282841357efaf78p1@CU691636
1.07e-130FFCP PHASE2:Hg19::chr4:16267477..16267486,-#_51e723bc34caba2e0282841357efaf78p@chr4:16267477..16267486, -
3.08e-117FFCP PHASE1:Hg19::chr1:158224278..158224289,+#_7c7bcb607b8395c070b13630126f66e0p9@CD1A
3.08e-117FFCP PHASE2:Hg19::chr1:158224278..158224289,+#_7c7bcb607b8395c070b13630126f66e0p9@CD1A
6.33e-117FFCP PHASE2:Hg19::chr9:124030015..124030022,+#_9e50cfbd40690851d4b9c46fc05a1a23p43@GSN
6.33e-117FFCP PHASE1:Hg19::chr9:124030015..124030022,+#_9e50cfbd40690851d4b9c46fc05a1a23p43@GSN
6.76e-105FFCP PHASE1:Hg19::chr17:6983503..6983512,-#_4bbd4b744b64eb26dafa677f217b460fp5@CLEC10A
6.76e-105FFCP PHASE2:Hg19::chr17:6983503..6983512,-#_4bbd4b744b64eb26dafa677f217b460fp5@CLEC10A
1.51e-104FFCP PHASE1:Hg19::chr12:121976278..121976285,-#_f8d3e7d9b51122fe6c13fd047e8645a2p@chr12:121976278..121976285, -
1.51e-104FFCP PHASE2:Hg19::chr12:121976278..121976285,-#_f8d3e7d9b51122fe6c13fd047e8645a2p@chr12:121976278..121976285, -
6.22e-103FFCP PHASE2:Hg19::chr1:158224235..158224244,+#_e2263a727c2d005bf6bbdb74201811b6p10@CD1A
6.22e-103FFCP PHASE1:Hg19::chr1:158224235..158224244,+#_e2263a727c2d005bf6bbdb74201811b6p10@CD1A
9.47e-103FFCP PHASE1:Hg19::chr17:6983479..6983490,-#_2f42bb69bd0143506002d7e9cb2ed2c8p4@CLEC10A
9.47e-103FFCP PHASE2:Hg19::chr17:6983479..6983490,-#_2f42bb69bd0143506002d7e9cb2ed2c8p4@CLEC10A
4.11e-102FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_72b61155d7d09c6c9411aab44bf0ad2ap@chr15:101535004..101535045, +
4.11e-102FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_72b61155d7d09c6c9411aab44bf0ad2ap@chr15:101535004..101535045, +
1.83e-98FFCP PHASE1:Hg19::chr10:119014661..119014665,+#_3c785f50463d66eaf342c3585be24860p@chr10:119014661..119014665, +
1.83e-98FFCP PHASE2:Hg19::chr10:119014661..119014665,+#_3c785f50463d66eaf342c3585be24860p@chr10:119014661..119014665, +
1.83e-98FFCP PHASE2:Hg19::chr12:8278143..8278154,+#_3c785f50463d66eaf342c3585be24860p@chr12:8278143..8278154, +
1.83e-98FFCP PHASE2:Hg19::chr4:26887004..26887011,-#_3c785f50463d66eaf342c3585be24860p@chr4:26887004..26887011, -
1.83e-98FFCP PHASE1:Hg19::chr4:78105380..78105389,+#_3c785f50463d66eaf342c3585be24860p@chr4:78105380..78105389, +
1.83e-98FFCP PHASE1:Hg19::chr17:46058427..46058445,+#_3c785f50463d66eaf342c3585be24860p@chr17:46058427..46058445, +
1.83e-98FFCP PHASE1:Hg19::chr14:91019196..91019216,-#_3c785f50463d66eaf342c3585be24860p@chr14:91019196..91019216, -
1.83e-98FFCP PHASE2:Hg19::chr8:20258347..20258360,+#_3c785f50463d66eaf342c3585be24860p@chr8:20258347..20258360, +
1.83e-98FFCP PHASE2:Hg19::chr14:55590616..55590617,+#_3c785f50463d66eaf342c3585be24860p33@LGALS3
1.83e-98FFCP PHASE2:Hg19::chr6:154521063..154521071,-#_3c785f50463d66eaf342c3585be24860p@chr6:154521063..154521071, -
1.83e-98FFCP PHASE2:Hg19::chr17:46058427..46058445,+#_3c785f50463d66eaf342c3585be24860p@chr17:46058427..46058445, +
1.83e-98FFCP PHASE1:Hg19::chr5:52909608..52909635,+#_3c785f50463d66eaf342c3585be24860p@chr5:52909608..52909635, +
1.83e-98FFCP PHASE1:Hg19::chr6:42145703..42145716,+#_3c785f50463d66eaf342c3585be24860p@chr6:42145703..42145716, +
1.83e-98FFCP PHASE1:Hg19::chr19:10246051..10246052,+#_3c785f50463d66eaf342c3585be24860p@chr19:10246051..10246052, +
1.83e-98FFCP PHASE1:Hg19::chr1:224398082..224398104,-#_3c785f50463d66eaf342c3585be24860p2@ENST00000453760
1.83e-98FFCP PHASE2:Hg19::chr16:57399108..57399115,+#_3c785f50463d66eaf342c3585be24860p@chr16:57399108..57399115, +
1.83e-98FFCP PHASE2:Hg19::chr14:91019196..91019216,-#_3c785f50463d66eaf342c3585be24860p@chr14:91019196..91019216, -
1.83e-98FFCP PHASE2:Hg19::chr8:17777952..17777982,-#_3c785f50463d66eaf342c3585be24860p@chr8:17777952..17777982, -
1.83e-98FFCP PHASE1:Hg19::chr9:131235669..131235680,+#_3c785f50463d66eaf342c3585be24860p@chr9:131235669..131235680, +
1.83e-98FFCP PHASE1:Hg19::chr10:127738495..127738498,-#_3c785f50463d66eaf342c3585be24860p@chr10:127738495..127738498, -
1.83e-98FFCP PHASE2:Hg19::chr10:127738495..127738498,-#_3c785f50463d66eaf342c3585be24860p@chr10:127738495..127738498, -
1.83e-98FFCP PHASE2:Hg19::chr19:17843005..17843009,+#_3c785f50463d66eaf342c3585be24860p@chr19:17843005..17843009, +
1.83e-98FFCP PHASE1:Hg19::chr17:67125354..67125365,-#_3c785f50463d66eaf342c3585be24860p@chr17:67125354..67125365, -
1.83e-98FFCP PHASE1:Hg19::chr12:1725865..1725884,+#_3c785f50463d66eaf342c3585be24860p7@WNT5B
1.83e-98FFCP PHASE1:Hg19::chr16:5070595..5070602,-#_3c785f50463d66eaf342c3585be24860p@chr16:5070595..5070602, -
1.83e-98FFCP PHASE1:Hg19::chr15:45454976..45454985,+#_3c785f50463d66eaf342c3585be24860p@chr15:45454976..45454985, +
1.83e-98FFCP PHASE2:Hg19::chr4:91005462..91005483,+#_3c785f50463d66eaf342c3585be24860p@chr4:91005462..91005483, +
1.83e-98FFCP PHASE1:Hg19::chr8:20258288..20258300,+#_3c785f50463d66eaf342c3585be24860p@chr8:20258288..20258300, +
1.83e-98FFCP PHASE1:Hg19::chr3:152588255..152588266,+#_3c785f50463d66eaf342c3585be24860p@chr3:152588255..152588266, +
1.83e-98FFCP PHASE2:Hg19::chr4:169633317..169633344,+#_3c785f50463d66eaf342c3585be24860p43@PALLD
1.83e-98FFCP PHASE2:Hg19::chr17:67125354..67125365,-#_3c785f50463d66eaf342c3585be24860p@chr17:67125354..67125365, -
1.83e-98FFCP PHASE2:Hg19::chr2:218933972..218933980,+#_3c785f50463d66eaf342c3585be24860p1@RUFY4
1.83e-98FFCP PHASE1:Hg19::chr11:7544914..7544928,+#_3c785f50463d66eaf342c3585be24860p@chr11:7544914..7544928, +
1.83e-98FFCP PHASE1:Hg19::chr17:26961255..26961266,-#_3c785f50463d66eaf342c3585be24860p@chr17:26961255..26961266, -
1.83e-98FFCP PHASE2:Hg19::chr20:15229663..15229673,+#_3c785f50463d66eaf342c3585be24860p@chr20:15229663..15229673, +
1.83e-98FFCP PHASE2:Hg19::chr5:86707848..86707855,-#_3c785f50463d66eaf342c3585be24860p@chr5:86707848..86707855, -
1.83e-98FFCP PHASE1:Hg19::chr9:131235697..131235702,+#_3c785f50463d66eaf342c3585be24860p@chr9:131235697..131235702, +
1.83e-98FFCP PHASE2:Hg19::chr1:153744224..153744233,+#_3c785f50463d66eaf342c3585be24860p@chr1:153744224..153744233, +
1.83e-98FFCP PHASE2:Hg19::chr17:26961255..26961266,-#_3c785f50463d66eaf342c3585be24860p@chr17:26961255..26961266, -
1.83e-98FFCP PHASE2:Hg19::chr15:45454976..45454985,+#_3c785f50463d66eaf342c3585be24860p@chr15:45454976..45454985, +
1.83e-98FFCP PHASE2:Hg19::chr6:42145678..42145695,+#_3c785f50463d66eaf342c3585be24860p@chr6:42145678..42145695, +
1.83e-98FFCP PHASE1:Hg19::chr4:26887004..26887011,-#_3c785f50463d66eaf342c3585be24860p@chr4:26887004..26887011, -
1.83e-98FFCP PHASE2:Hg19::chr6:32156759..32156767,+#_3c785f50463d66eaf342c3585be24860p@chr6:32156759..32156767, +
1.83e-98FFCP PHASE1:Hg19::chr17:46058452..46058468,+#_3c785f50463d66eaf342c3585be24860p@chr17:46058452..46058468, +
1.83e-98FFCP PHASE2:Hg19::chr11:7544914..7544928,+#_3c785f50463d66eaf342c3585be24860p@chr11:7544914..7544928, +
1.83e-98FFCP PHASE2:Hg19::chr8:97906247..97906259,+#_3c785f50463d66eaf342c3585be24860p@chr8:97906247..97906259, +
1.83e-98FFCP PHASE1:Hg19::chr8:20258347..20258360,+#_3c785f50463d66eaf342c3585be24860p@chr8:20258347..20258360, +
1.83e-98FFCP PHASE1:Hg19::chr6:154521063..154521071,-#_3c785f50463d66eaf342c3585be24860p@chr6:154521063..154521071, -
1.83e-98FFCP PHASE1:Hg19::chr17:8171916..8171922,+#_3c785f50463d66eaf342c3585be24860p4@PFAS
1.83e-98FFCP PHASE2:Hg19::chr17:46058452..46058468,+#_3c785f50463d66eaf342c3585be24860p@chr17:46058452..46058468, +
1.83e-98FFCP PHASE2:Hg19::chr2:218954217..218954224,+#_3c785f50463d66eaf342c3585be24860p@chr2:218954217..218954224, +
1.83e-98FFCP PHASE1:Hg19::chr17:6982162..6982170,-#_3c785f50463d66eaf342c3585be24860p2@CU691636
1.83e-98FFCP PHASE2:Hg19::chr17:8171916..8171922,+#_3c785f50463d66eaf342c3585be24860p4@PFAS
1.83e-98FFCP PHASE1:Hg19::chr11:7544941..7544949,+#_3c785f50463d66eaf342c3585be24860p@chr11:7544941..7544949, +
1.83e-98FFCP PHASE1:Hg19::chr17:26970937..26970956,-#_3c785f50463d66eaf342c3585be24860p2@KIAA0100
1.83e-98FFCP PHASE2:Hg19::chr4:78105380..78105389,+#_3c785f50463d66eaf342c3585be24860p@chr4:78105380..78105389, +
1.83e-98FFCP PHASE1:Hg19::chr10:46048740..46048751,-#_3c785f50463d66eaf342c3585be24860p@chr10:46048740..46048751, -
1.83e-98FFCP PHASE2:Hg19::chr12:1725865..1725884,+#_3c785f50463d66eaf342c3585be24860p7@WNT5B
1.83e-98FFCP PHASE2:Hg19::chr10:46048740..46048751,-#_3c785f50463d66eaf342c3585be24860p@chr10:46048740..46048751, -
1.83e-98FFCP PHASE1:Hg19::chr8:17777952..17777982,-#_3c785f50463d66eaf342c3585be24860p@chr8:17777952..17777982, -
1.83e-98FFCP PHASE1:Hg19::chr10:127738525..127738534,-#_3c785f50463d66eaf342c3585be24860p@chr10:127738525..127738534, -
1.83e-98FFCP PHASE2:Hg19::chr17:6982162..6982170,-#_3c785f50463d66eaf342c3585be24860p2@CU691636
1.83e-98FFCP PHASE2:Hg19::chr10:127738525..127738534,-#_3c785f50463d66eaf342c3585be24860p@chr10:127738525..127738534, -
1.83e-98FFCP PHASE2:Hg19::chr19:10246051..10246052,+#_3c785f50463d66eaf342c3585be24860p@chr19:10246051..10246052, +
1.83e-98FFCP PHASE1:Hg19::chr19:17843005..17843009,+#_3c785f50463d66eaf342c3585be24860p@chr19:17843005..17843009, +
1.83e-98FFCP PHASE1:Hg19::chr16:57399108..57399115,+#_3c785f50463d66eaf342c3585be24860p@chr16:57399108..57399115, +
1.83e-98FFCP PHASE2:Hg19::chr17:26970937..26970956,-#_3c785f50463d66eaf342c3585be24860p2@KIAA0100
1.83e-98FFCP PHASE2:Hg19::chr5:52909608..52909635,+#_3c785f50463d66eaf342c3585be24860p@chr5:52909608..52909635, +
1.83e-98FFCP PHASE2:Hg19::chr6:42145703..42145716,+#_3c785f50463d66eaf342c3585be24860p@chr6:42145703..42145716, +
1.83e-98FFCP PHASE1:Hg19::chr11:1870362..1870366,-#_3c785f50463d66eaf342c3585be24860p@chr11:1870362..1870366, -
1.83e-98FFCP PHASE2:Hg19::chr11:1870362..1870366,-#_3c785f50463d66eaf342c3585be24860p@chr11:1870362..1870366, -
1.83e-98FFCP PHASE2:Hg19::chr1:224398082..224398104,-#_3c785f50463d66eaf342c3585be24860p2@ENST00000453760
1.83e-98FFCP PHASE2:Hg19::chr11:7544941..7544949,+#_3c785f50463d66eaf342c3585be24860p@chr11:7544941..7544949, +
1.83e-98FFCP PHASE1:Hg19::chr4:91005462..91005483,+#_3c785f50463d66eaf342c3585be24860p@chr4:91005462..91005483, +
1.83e-98FFCP PHASE1:Hg19::chr2:218933972..218933980,+#_3c785f50463d66eaf342c3585be24860p1@RUFY4
1.83e-98FFCP PHASE2:Hg19::chr16:5070595..5070602,-#_3c785f50463d66eaf342c3585be24860p@chr16:5070595..5070602, -

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