CL:0002202: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id=CL:1000407 | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="An epithelial cell of the tracheobronchial tree." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002202 | |||
|is_a=CL:0002632 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=epithelial cell of tracheobronchial tree | |||
|namespace=FANTOM | |||
|obo_creation_date=2010-09-02T02:09:14Z | |||
|part_of=UBERON:0007196 | |part_of=UBERON:0007196 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=FMA:66816 | |||
}} | }} | ||
Latest revision as of 16:41, 12 September 2014
| Name: | epithelial cell of tracheobronchial tree | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelial cell of the tracheobronchial tree." [GOC:tfm] | ||
| Xrefs: |
| ||
| Alt_id: | CL:1000407 | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-02T02:09:14Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002632(epithelial cell of lower respiratory tract) |
|---|---|
| part_of: | UBERON:0007196(tracheobronchial tree) |
Children
| is a: | CL:0000307 (tracheal epithelial cell),CL:0002328 (bronchial epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
... further results Mouse (Mus musculus)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002202 (epithelial cell of tracheobronchial tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_d910ebc391545db6ad936657eba0266c | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_d910ebc391545db6ad936657eba0266c | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_d910ebc391545db6ad936657eba0266c | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_d910ebc391545db6ad936657eba0266c | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_d910ebc391545db6ad936657eba0266c | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_d910ebc391545db6ad936657eba0266c | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_d910ebc391545db6ad936657eba0266c | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_d910ebc391545db6ad936657eba0266c | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_d910ebc391545db6ad936657eba0266c | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_d910ebc391545db6ad936657eba0266c | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_d910ebc391545db6ad936657eba0266c | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_d910ebc391545db6ad936657eba0266c | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_d910ebc391545db6ad936657eba0266c | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_d910ebc391545db6ad936657eba0266c | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_d910ebc391545db6ad936657eba0266c | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_d910ebc391545db6ad936657eba0266c | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_d910ebc391545db6ad936657eba0266c | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_d910ebc391545db6ad936657eba0266c | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_d910ebc391545db6ad936657eba0266c | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_d910ebc391545db6ad936657eba0266c | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_d910ebc391545db6ad936657eba0266c | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_d910ebc391545db6ad936657eba0266c | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_d910ebc391545db6ad936657eba0266c | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_d910ebc391545db6ad936657eba0266c | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_d910ebc391545db6ad936657eba0266c | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_d910ebc391545db6ad936657eba0266c | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_d910ebc391545db6ad936657eba0266c | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_d910ebc391545db6ad936657eba0266c | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_d910ebc391545db6ad936657eba0266c | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_d910ebc391545db6ad936657eba0266c | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_d910ebc391545db6ad936657eba0266c | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_d910ebc391545db6ad936657eba0266c | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_d910ebc391545db6ad936657eba0266c | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_d910ebc391545db6ad936657eba0266c | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_d910ebc391545db6ad936657eba0266c | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_d910ebc391545db6ad936657eba0266c | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_d910ebc391545db6ad936657eba0266c | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_d910ebc391545db6ad936657eba0266c | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_d910ebc391545db6ad936657eba0266c | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_d910ebc391545db6ad936657eba0266c | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_d910ebc391545db6ad936657eba0266c | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_d910ebc391545db6ad936657eba0266c | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_d910ebc391545db6ad936657eba0266c | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_d910ebc391545db6ad936657eba0266c | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_d910ebc391545db6ad936657eba0266c | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_d910ebc391545db6ad936657eba0266c | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_d910ebc391545db6ad936657eba0266c | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_d910ebc391545db6ad936657eba0266c | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_d910ebc391545db6ad936657eba0266c | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_d910ebc391545db6ad936657eba0266c | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_d910ebc391545db6ad936657eba0266c | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_d910ebc391545db6ad936657eba0266c | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_d910ebc391545db6ad936657eba0266c | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_d910ebc391545db6ad936657eba0266c | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_d910ebc391545db6ad936657eba0266c | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_d910ebc391545db6ad936657eba0266c | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_d910ebc391545db6ad936657eba0266c | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_d910ebc391545db6ad936657eba0266c | p@chr5:91199084..91199088, - |
| 4.4e-78 | FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_1e8983dbffc1e2e1cc7e60b7aa9a7859 | p@chr7:135018332..135018336, + |
| 4.4e-78 | FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_1e8983dbffc1e2e1cc7e60b7aa9a7859 | p@chr7:135018332..135018336, + |
| 5.16e-78 | FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_83bd02d50b7c34a1f59934b85d3ccf74 | p@chr3:189632708..189632721, - |
| 5.16e-78 | FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_83bd02d50b7c34a1f59934b85d3ccf74 | p@chr3:189632708..189632721, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_7dbcf00405f723e9c8db14fd31ccd2c3 | p@chr3:90392458..90392472, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_56224a8fdf041debeae31a3bb54ded39 | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_56224a8fdf041debeae31a3bb54ded39 | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_56224a8fdf041debeae31a3bb54ded39 | p@chr15:38385124..38385138, + |
| 5.88e-57 | FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_ae4ace974f5be38024bd1ac89a5c4e7d | p@chr10:73679250..73679255, - |
| 5.88e-57 | FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_ae4ace974f5be38024bd1ac89a5c4e7d | p@chr10:73679250..73679255, - |
| 5.25e-54 | FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_f6edd8b69656b592fa820d93902086b5 | p@chr9:26747081..26747110, + |
| 5.25e-54 | FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_f6edd8b69656b592fa820d93902086b5 | p@chr9:26747081..26747110, + |
