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{{CL
{{CL
|id=CL:0002541
|alt_id=
|name=chorionic membrane mesenchymal stem cell
|namespace=cell
|def="A mesenchymal stem cell of the chorionic membrane." [GOC:tfm]
|xref=
|is_a=CL:0000134
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T03:04:35Z
|def="A mesenchymal stem cell of the chorionic membrane." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002541
|is_a=CL:0000134 ;;CL:0000349
|is_obsolete=
|located_in=
|located_in=
|name=chorionic membrane mesenchymal stem cell
|namespace=FANTOM
|obo_creation_date=2011-02-28T03:04:35Z
|part_of=UBERON:0003124
|part_of=UBERON:0003124
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:chorionic membrane mesenchymal stem cell
Namespace:FANTOM
Definition:"A mesenchymal stem cell of the chorionic membrane." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T03:04:35Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0000349(extraembryonic cell)
part_of:UBERON:0003124(chorion)



Children


derives from:FF:0000038 (human chorionic membrane stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002541 (chorionic membrane mesenchymal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE2:Hg19::chr2:216693832..216693839,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr2:216693832..216693839, -
2.79e-195FFCP PHASE2:Hg19::chr22:32957467..32957470,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr22:32957467..32957470, +
2.79e-195FFCP PHASE1:Hg19::chr7:150554537..150554542,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp24@ABP1
2.79e-195FFCP PHASE2:Hg19::chr10:134275596..134275597,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr10:134275596..134275597, +
2.79e-195FFCP PHASE2:Hg19::chr7:150554537..150554542,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp24@ABP1
2.79e-195FFCP PHASE2:Hg19::chr19:52294756..52294758,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr19:52294756..52294758, -
2.79e-195FFCP PHASE1:Hg19::chr14:77950741..77950750,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp10@ISM2
2.79e-195FFCP PHASE1:Hg19::chr10:134275596..134275597,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr10:134275596..134275597, +
2.79e-195FFCP PHASE1:Hg19::chr11:76366237..76366246,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr11:76366237..76366246, +
2.79e-195FFCP PHASE2:Hg19::chr19:17423022..17423028,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr19:17423022..17423028, +
2.79e-195FFCP PHASE1:Hg19::chr2:216693832..216693839,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr2:216693832..216693839, -
2.79e-195FFCP PHASE2:Hg19::chr11:76366237..76366246,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr11:76366237..76366246, +
2.79e-195FFCP PHASE2:Hg19::chr14:77950741..77950750,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp10@ISM2
2.79e-195FFCP PHASE1:Hg19::chr22:32957467..32957470,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr22:32957467..32957470, +
2.79e-195FFCP PHASE1:Hg19::chr19:17423022..17423028,+#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr19:17423022..17423028, +
2.79e-195FFCP PHASE1:Hg19::chr19:52294756..52294758,-#_286ce7e7f1e48aa3d64b8a52f279a2ebp@chr19:52294756..52294758, -
3.27e-147FFCP PHASE1:Hg19::chr17:79910718..79910728,-#_03898be948a920403fad41c8af699b48p@chr17:79910718..79910728, -
3.27e-147FFCP PHASE2:Hg19::chr17:79910718..79910728,-#_03898be948a920403fad41c8af699b48p@chr17:79910718..79910728, -
3.27e-147FFCP PHASE2:Hg19::chr1:103299100..103299144,+#_03898be948a920403fad41c8af699b48p@chr1:103299100..103299144, +
3.27e-147FFCP PHASE1:Hg19::chr1:103299100..103299144,+#_03898be948a920403fad41c8af699b48p@chr1:103299100..103299144, +
5.41e-147FFCP PHASE2:Hg19::chr3:194445234..194445270,+#_40a50542347b31ee6de3dd9deeb17dbfp@chr3:194445234..194445270, +
5.41e-147FFCP PHASE2:Hg19::chr7:150554839..150554849,+#_40a50542347b31ee6de3dd9deeb17dbfp11@ABP1
5.41e-147FFCP PHASE1:Hg19::chr20:61867326..61867336,+#_40a50542347b31ee6de3dd9deeb17dbfp4@BIRC7
5.41e-147FFCP PHASE1:Hg19::chr2:25862142..25862153,-#_40a50542347b31ee6de3dd9deeb17dbfp19@DTNB
5.41e-147FFCP PHASE1:Hg19::chr3:194445234..194445270,+#_40a50542347b31ee6de3dd9deeb17dbfp@chr3:194445234..194445270, +
5.41e-147FFCP PHASE1:Hg19::chr7:150554839..150554849,+#_40a50542347b31ee6de3dd9deeb17dbfp11@ABP1
5.41e-147FFCP PHASE2:Hg19::chr20:61867326..61867336,+#_40a50542347b31ee6de3dd9deeb17dbfp4@BIRC7
5.41e-147FFCP PHASE2:Hg19::chr2:25862142..25862153,-#_40a50542347b31ee6de3dd9deeb17dbfp19@DTNB
8.98e-131FFCP PHASE1:Hg19::chr2:16804236..16804248,-#_c0d1d37158eebc81a69dbd3e6b80ea92p9@FAM49A
8.98e-131FFCP PHASE2:Hg19::chr13:29004205..29004214,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr13:29004205..29004214, -
8.98e-131FFCP PHASE1:Hg19::chr3:15493229..15493233,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr3:15493229..15493233, -
8.98e-131FFCP PHASE2:Hg19::chr3:46069144..46069152,-#_c0d1d37158eebc81a69dbd3e6b80ea92p5@XCR1
8.98e-131FFCP PHASE1:Hg19::chr7:46073181..46073190,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr7:46073181..46073190, +
8.98e-131FFCP PHASE2:Hg19::chr1:176708805..176708814,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr1:176708805..176708814, +
8.98e-131FFCP PHASE2:Hg19::chr13:28959108..28959115,-#_c0d1d37158eebc81a69dbd3e6b80ea92p25@FLT1
8.98e-131FFCP PHASE1:Hg19::chrX:110507128..110507134,-#_c0d1d37158eebc81a69dbd3e6b80ea92p8@CAPN6
8.98e-131FFCP PHASE2:Hg19::chr14:34688978..34688987,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr14:34688978..34688987, -
8.98e-131FFCP PHASE1:Hg19::chr5:157345802..157345806,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr5:157345802..157345806, -
8.98e-131FFCP PHASE2:Hg19::chr1:176760549..176760561,+#_c0d1d37158eebc81a69dbd3e6b80ea92p19@PAPPA2
8.98e-131FFCP PHASE2:Hg19::chr13:28971118..28971128,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr13:28971118..28971128, -
8.98e-131FFCP PHASE2:Hg19::chr11:57176838..57176845,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:57176838..57176845, -
8.98e-131FFCP PHASE1:Hg19::chr13:28961673..28961683,-#_c0d1d37158eebc81a69dbd3e6b80ea92p16@FLT1
8.98e-131FFCP PHASE2:Hg19::chr2:16804236..16804248,-#_c0d1d37158eebc81a69dbd3e6b80ea92p9@FAM49A
8.98e-131FFCP PHASE2:Hg19::chr3:15493229..15493233,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr3:15493229..15493233, -
8.98e-131FFCP PHASE1:Hg19::chr11:57176838..57176845,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:57176838..57176845, -
8.98e-131FFCP PHASE2:Hg19::chr7:46073181..46073190,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr7:46073181..46073190, +
8.98e-131FFCP PHASE2:Hg19::chr22:33000436..33000460,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr22:33000436..33000460, -
8.98e-131FFCP PHASE2:Hg19::chr13:28961673..28961683,-#_c0d1d37158eebc81a69dbd3e6b80ea92p16@FLT1
8.98e-131FFCP PHASE1:Hg19::chr1:176708805..176708814,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr1:176708805..176708814, +
8.98e-131FFCP PHASE2:Hg19::chr1:176525848..176525853,+#_c0d1d37158eebc81a69dbd3e6b80ea92p23@PAPPA2
8.98e-131FFCP PHASE2:Hg19::chr5:157345802..157345806,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr5:157345802..157345806, -
8.98e-131FFCP PHASE2:Hg19::chr11:57156666..57156671,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:57156666..57156671, +
8.98e-131FFCP PHASE1:Hg19::chr22:37952104..37952119,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr22:37952104..37952119, +
8.98e-131FFCP PHASE1:Hg19::chr14:34516082..34516087,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr14:34516082..34516087, -
8.98e-131FFCP PHASE1:Hg19::chr13:28979951..28979962,-#_c0d1d37158eebc81a69dbd3e6b80ea92p13@FLT1
8.98e-131FFCP PHASE1:Hg19::chr11:57156666..57156671,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:57156666..57156671, +
8.98e-131FFCP PHASE1:Hg19::chr1:176760549..176760561,+#_c0d1d37158eebc81a69dbd3e6b80ea92p19@PAPPA2
8.98e-131FFCP PHASE2:Hg19::chrX:110507128..110507134,-#_c0d1d37158eebc81a69dbd3e6b80ea92p8@CAPN6
8.98e-131FFCP PHASE1:Hg19::chr20:11677855..11677865,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr20:11677855..11677865, -
8.98e-131FFCP PHASE1:Hg19::chr13:29004205..29004214,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr13:29004205..29004214, -
8.98e-131FFCP PHASE2:Hg19::chr14:34516082..34516087,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr14:34516082..34516087, -
8.98e-131FFCP PHASE1:Hg19::chr3:46069144..46069152,-#_c0d1d37158eebc81a69dbd3e6b80ea92p5@XCR1
8.98e-131FFCP PHASE1:Hg19::chr11:76366247..76366254,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:76366247..76366254, +
8.98e-131FFCP PHASE2:Hg19::chr22:37952104..37952119,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr22:37952104..37952119, +
8.98e-131FFCP PHASE1:Hg19::chr1:176525848..176525853,+#_c0d1d37158eebc81a69dbd3e6b80ea92p23@PAPPA2
8.98e-131FFCP PHASE2:Hg19::chr11:76366247..76366254,+#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr11:76366247..76366254, +
8.98e-131FFCP PHASE2:Hg19::chr20:11677855..11677865,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr20:11677855..11677865, -
8.98e-131FFCP PHASE1:Hg19::chr13:28971118..28971128,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr13:28971118..28971128, -
8.98e-131FFCP PHASE2:Hg19::chr13:28979951..28979962,-#_c0d1d37158eebc81a69dbd3e6b80ea92p13@FLT1
8.98e-131FFCP PHASE1:Hg19::chr22:33000436..33000460,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr22:33000436..33000460, -
8.98e-131FFCP PHASE1:Hg19::chr13:28959108..28959115,-#_c0d1d37158eebc81a69dbd3e6b80ea92p25@FLT1
8.98e-131FFCP PHASE1:Hg19::chr14:34688978..34688987,-#_c0d1d37158eebc81a69dbd3e6b80ea92p@chr14:34688978..34688987, -
2.33e-118FFCP PHASE2:Hg19::chr7:150553527..150553540,+#_44eab95e14a98228e288640e42c74cedp10@ABP1
2.33e-118FFCP PHASE1:Hg19::chrX:56057971..56057978,-#_44eab95e14a98228e288640e42c74cedp@chrX:56057971..56057978, -
2.33e-118FFCP PHASE2:Hg19::chr14:77951114..77951128,-#_44eab95e14a98228e288640e42c74cedp9@ISM2
2.33e-118FFCP PHASE2:Hg19::chr4:10616734..10616776,+#_44eab95e14a98228e288640e42c74cedp@chr4:10616734..10616776, +
2.33e-118FFCP PHASE2:Hg19::chr1:120056675..120056682,+#_44eab95e14a98228e288640e42c74cedp@chr1:120056675..120056682, +
2.33e-118FFCP PHASE2:Hg19::chrX:56057971..56057978,-#_44eab95e14a98228e288640e42c74cedp@chrX:56057971..56057978, -
2.33e-118FFCP PHASE1:Hg19::chr17:79917433..79917443,-#_44eab95e14a98228e288640e42c74cedp@chr17:79917433..79917443, -
2.33e-118FFCP PHASE1:Hg19::chr1:43987714..43987727,+#_44eab95e14a98228e288640e42c74cedp@chr1:43987714..43987727, +
2.33e-118FFCP PHASE2:Hg19::chr17:79917433..79917443,-#_44eab95e14a98228e288640e42c74cedp@chr17:79917433..79917443, -
2.33e-118FFCP PHASE1:Hg19::chr1:120056675..120056682,+#_44eab95e14a98228e288640e42c74cedp@chr1:120056675..120056682, +
2.33e-118FFCP PHASE1:Hg19::chr16:30123873..30123913,-#_44eab95e14a98228e288640e42c74cedp@chr16:30123873..30123913, -
2.33e-118FFCP PHASE1:Hg19::chr7:150553527..150553540,+#_44eab95e14a98228e288640e42c74cedp10@ABP1
2.33e-118FFCP PHASE2:Hg19::chr1:43987714..43987727,+#_44eab95e14a98228e288640e42c74cedp@chr1:43987714..43987727, +
2.33e-118FFCP PHASE2:Hg19::chr16:30123873..30123913,-#_44eab95e14a98228e288640e42c74cedp@chr16:30123873..30123913, -
2.33e-118FFCP PHASE1:Hg19::chr4:10616734..10616776,+#_44eab95e14a98228e288640e42c74cedp@chr4:10616734..10616776, +
2.33e-118FFCP PHASE1:Hg19::chr14:77951114..77951128,-#_44eab95e14a98228e288640e42c74cedp9@ISM2
3.48e-118FFCP PHASE1:Hg19::chr6:169498853..169498877,+#_8339c753644305cf3dcfb7d8d3f021a5p@chr6:169498853..169498877, +
3.48e-118FFCP PHASE1:Hg19::chr1:43987687..43987701,+#_8339c753644305cf3dcfb7d8d3f021a5p@chr1:43987687..43987701, +
3.48e-118FFCP PHASE2:Hg19::chr6:169498853..169498877,+#_8339c753644305cf3dcfb7d8d3f021a5p@chr6:169498853..169498877, +
3.48e-118FFCP PHASE2:Hg19::chr1:43987687..43987701,+#_8339c753644305cf3dcfb7d8d3f021a5p@chr1:43987687..43987701, +
5.2e-118FFCP PHASE2:Hg19::chr14:77965643..77965654,-#_fd8d01742f5395b11e18dcc3cb6275cbp8@ISM2
5.2e-118FFCP PHASE1:Hg19::chr14:34509180..34509193,+#_fd8d01742f5395b11e18dcc3cb6275cbp1@ENST00000555922
5.2e-118FFCP PHASE2:Hg19::chr2:86094764..86094796,-#_fd8d01742f5395b11e18dcc3cb6275cbp9@ST3GAL5
5.2e-118FFCP PHASE1:Hg19::chr19:4234683..4234696,+#_fd8d01742f5395b11e18dcc3cb6275cbp@chr19:4234683..4234696, +
5.2e-118FFCP PHASE1:Hg19::chr7:150554953..150554959,+#_fd8d01742f5395b11e18dcc3cb6275cbp18@ABP1
5.2e-118FFCP PHASE2:Hg19::chr7:150553574..150553583,+#_fd8d01742f5395b11e18dcc3cb6275cbp19@ABP1
5.2e-118FFCP PHASE2:Hg19::chr14:34509180..34509193,+#_fd8d01742f5395b11e18dcc3cb6275cbp1@ENST00000555922
5.2e-118FFCP PHASE2:Hg19::chr7:150554953..150554959,+#_fd8d01742f5395b11e18dcc3cb6275cbp18@ABP1

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