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{{CL
{{CL
|id=CL:1001319
|alt_id=
|name=bladder cell
|namespace=cell
|def=
|xref=KUPO:0001120
|is_a=CL:0000548
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1001319
|is_a=CL:1000600
|is_obsolete=
|located_in=
|located_in=
|name=bladder cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001255
|part_of=UBERON:0001255
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=KUPO:0001120
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:bladder cell
Namespace:FANTOM
Xrefs:
links:
KUPO:0001120


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000600(lower urinary tract cell)
part_of:UBERON:0001255(urinary bladder)



Children


is a:CL:0002597 (smooth muscle cell of bladder)
derives from:FF:0102868 (bladder transitional cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1001319 (bladder cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428p2@ENST00000427341
5.42e-195FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428p2@ENST00000427341
9.37e-99FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92p26@LINC00340
9.37e-99FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92p26@LINC00340
9.37e-99FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21588091..21588098, -
2.55e-98FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr6:21876977..21876981, +
2.55e-98FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr6:21876977..21876981, +
2.55e-98FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr1:233430709..233430711, +
2.55e-98FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr1:233430709..233430711, +
1.23e-66FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr13:96459990..96459992, +
1.23e-66FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr13:96459990..96459992, +
1.23e-66FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr6:21664412..21664419, +
2.39e-66FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp2@ENST00000528507
2.39e-66FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp2@ENST00000528507
4.66e-66FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67bp23@PAK6
4.66e-66FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67bp23@PAK6
1.46e-50FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202p@chr6:21665113..21665128, -
3.99e-50FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7p@chr17:4699695..4699699, -
3.99e-50FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7p@chr17:4699695..4699699, -
9.91e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884eap@chr10:30046722..30046725, -
9.91e-41FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884eap@chr5:57555322..57555334, -
9.91e-41FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884eap@chr5:57555322..57555334, -
9.91e-41FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884eap1@AL117559
9.91e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884eap@chr10:30046722..30046725, -
9.91e-41FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884eap1@AL117559
1.48e-40FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bcp@chr10:30151938..30151956, -
1.48e-40FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bcp@chr10:30151938..30151956, -
1.48e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bcp@chr17:2264983..2264992, +
1.48e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bcp@chr17:2264983..2264992, +
3.3e-40FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ffp@chr19:48102065..48102072, +
3.3e-40FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ffp@chr19:48102065..48102072, +
3.3e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ffp8@ALDH1A3
3.3e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ffp8@ALDH1A3
1.84e-34FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5eep@chr6:21680979..21680984, +
1.84e-34FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5eep@chr6:21680979..21680984, +
2.58e-34FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565p@chr6:21070033..21070038, +
2.58e-34FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565p2@uc002uku.2
2.58e-34FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565p2@uc002uku.2
2.58e-34FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565p@chr4:183752843..183752848, +
2.58e-34FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565p@chr4:183752843..183752848, +
2.58e-34FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565p@chr6:21070033..21070038, +
3.61e-34FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9befp@chr6:22047883..22047886, +
3.61e-34FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9befp@chr6:22047883..22047886, +
5.05e-34FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35p@chr19:34618510..34618515, -
5.05e-34FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35p@chr19:34618510..34618515, -
7.48e-30FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297ap@chr5:54179495..54179507, +
7.48e-30FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297ap@chr5:54179495..54179507, +
7.48e-30FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297ap1@ENST00000412785
7.48e-30FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297ap13@E2F3
7.48e-30FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297ap1@ENST00000412785
7.48e-30FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297ap13@E2F3
7.48e-30FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297ap@chr6:21665095..21665110, -
7.48e-30FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297ap@chr6:21665095..21665110, -
2.37e-29FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454dbp14@MAP3K4
2.37e-29FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454dbp14@MAP3K4
2.37e-29FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454dbp4@EDAR
2.37e-29FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454dbp4@EDAR
4.2e-29FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015p@chrX:104100378..104100381, +
4.2e-29FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015p@chrX:104100378..104100381, +
2.78e-26FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bbp@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bbp@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bbp4@LINC00460
2.78e-26FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bbp4@LINC00460
3.58e-26FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22efp@chr3:104180688..104180692, +
3.58e-26FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22efp@chr3:104180688..104180692, +
4.61e-26FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78ep@chr7:121156367..121156370, -
4.61e-26FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78ep@chr9:93960724..93960730, +
4.61e-26FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78ep@chr9:93960724..93960730, +
4.61e-26FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78ep@chr1:12239065..12239070, -
4.61e-26FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78ep5@ALDH1A3
4.61e-26FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78ep5@ALDH1A3
4.61e-26FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78ep@chr7:121156367..121156370, -
4.61e-26FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78ep@chr1:12239065..12239070, -

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