CL:1001319: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=bladder cell | |name=bladder cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001255 | |part_of=UBERON:0001255 | ||
Latest revision as of 16:47, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:1000600(lower urinary tract cell) |
|---|---|
| part_of: | UBERON:0001255(urinary bladder) |
Children
| is a: | CL:0002597 (smooth muscle cell of bladder) |
|---|---|
| derives from: | FF:0102868 (bladder transitional cell carcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
Mouse (Mus musculus)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1001319 (bladder cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428 | p@chr15:101282110..101282113, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428 | p2@ENST00000427341 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428 | p@chr15:101282110..101282113, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428 | p2@ENST00000427341 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21664489..21664494, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21664489..21664494, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92 | p26@LINC00340 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92 | p26@LINC00340 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21383702..21383704, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr21:39627877..39627884, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21383702..21383704, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr21:39627877..39627884, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr3:13992334..13992338, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr3:13992334..13992338, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21588091..21588098, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92 | p@chr6:21588091..21588098, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8 | p@chr6:21876977..21876981, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8 | p@chr1:233430709..233430711, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8 | p@chr1:233430709..233430711, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8 | p@chr6:21876977..21876981, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8 | p@chr13:96459990..96459992, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8 | p@chr6:21664412..21664419, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8 | p@chr13:96459990..96459992, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8 | p@chr6:21664412..21664419, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr6:20534754..20534756, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr2:176971270..176971277, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr15:79296342..79296353, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p2@ENST00000528507 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr15:79296342..79296353, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p2@ENST00000528507 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr2:176971270..176971277, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fc | p@chr6:20534754..20534756, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67b | p@chr11:92613787..92613796, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67b | p@chr14:80855894..80855900, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67b | p@chr14:80855894..80855900, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67b | p23@PAK6 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67b | p@chr11:92613787..92613796, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67b | p23@PAK6 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202 | p@chr6:21665769..21665780, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202 | p@chr6:21022855..21022892, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202 | p@chr6:21022855..21022892, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202 | p@chr6:21665113..21665128, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202 | p@chr6:21665113..21665128, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202 | p@chr6:21665769..21665780, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7 | p@chr17:4699695..4699699, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7 | p@chr17:4699695..4699699, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884ea | p@chr5:57555322..57555334, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884ea | p@chr5:57555322..57555334, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884ea | p1@AL117559 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884ea | p1@AL117559 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884ea | p@chr10:30046722..30046725, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884ea | p@chr10:30046722..30046725, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bc | p@chr10:30151938..30151956, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bc | p@chr17:2264983..2264992, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bc | p@chr10:30151938..30151956, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bc | p@chr17:2264983..2264992, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ff | p@chr19:48102065..48102072, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ff | p8@ALDH1A3 |
| 3.3e-40 | FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ff | p@chr19:48102065..48102072, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ff | p8@ALDH1A3 |
| 1.84e-34 | FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5ee | p@chr6:21680979..21680984, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5ee | p@chr6:21680979..21680984, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565 | p2@uc002uku.2 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565 | p2@uc002uku.2 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565 | p@chr4:183752843..183752848, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565 | p@chr4:183752843..183752848, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565 | p@chr6:21070033..21070038, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565 | p@chr6:21070033..21070038, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9bef | p@chr6:22047883..22047886, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9bef | p@chr6:22047883..22047886, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35 | p@chr19:34618510..34618515, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35 | p@chr19:34618510..34618515, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297a | p1@ENST00000412785 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297a | p13@E2F3 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297a | p1@ENST00000412785 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297a | p13@E2F3 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297a | p@chr6:21665095..21665110, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297a | p@chr6:21665095..21665110, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297a | p@chr5:54179495..54179507, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297a | p@chr5:54179495..54179507, + |
| 2.37e-29 | FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454db | p14@MAP3K4 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454db | p14@MAP3K4 |
| 2.37e-29 | FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454db | p4@EDAR |
| 2.37e-29 | FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454db | p4@EDAR |
| 4.2e-29 | FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015 | p@chrX:104100378..104100381, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015 | p@chrX:104100378..104100381, + |
| 2.78e-26 | FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bb | p@chr6:21933119..21933123, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bb | p@chr6:21933119..21933123, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bb | p4@LINC00460 |
| 2.78e-26 | FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bb | p4@LINC00460 |
| 3.58e-26 | FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22ef | p@chr3:104180688..104180692, + |
| 3.58e-26 | FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22ef | p@chr3:104180688..104180692, + |
| 4.61e-26 | FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78e | p@chr1:12239065..12239070, - |
| 4.61e-26 | FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78e | p5@ALDH1A3 |
| 4.61e-26 | FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78e | p@chr7:121156367..121156370, - |
| 4.61e-26 | FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78e | p5@ALDH1A3 |
| 4.61e-26 | FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78e | p@chr1:12239065..12239070, - |
| 4.61e-26 | FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78e | p@chr7:121156367..121156370, - |
| 4.61e-26 | FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78e | p@chr9:93960724..93960730, + |
| 4.61e-26 | FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78e | p@chr9:93960724..93960730, + |
