DOID:0060084: Difference between revisions
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{{DOID | {{DOID | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=lschriml | |created_by=lschriml | ||
| | |def="A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:0060084 | |||
|is_a=DOID:0060072 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cell type benign neoplasm | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-07-14T11:59:48Z | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:48, 12 September 2014
| Name: | cell type benign neoplasm |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor] |
| Created by: | lschriml |
| Creation date: | 2011-07-14T11:59:48Z |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060072(benign neoplasm) |
|---|
Children
| is a: | DOID:127 (leiomyoma),DOID:255 (hemangioma),DOID:2615 (papilloma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10559-108A1
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
- 10724-110A4
- 10738-110B9
- 10751-110D4
Mouse (Mus musculus)
- 10559-108A1
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
- 10724-110A4
- 10738-110B9
- 10751-110D4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060084 (cell type benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.41e-147 | FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5 | p1@uc003epl.2 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5 | p1@uc003epl.2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242 | p@chr1:152842546..152842554, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242 | p@chr1:152842532..152842539, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242 | p@chr1:152842546..152842554, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242 | p@chr1:152842532..152842539, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0 | p2@ENST00000505721 |
| 2.33e-118 | FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0 | p2@ENST00000505721 |
| 3.48e-118 | FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202 | p@chr2:218192886..218192899, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202 | p@chr2:218192886..218192899, - |
| 5.41e-85 | FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899 | p@chr8:42037558..42037573, - |
| 5.41e-85 | FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899 | p@chr8:42037558..42037573, - |
| 1.28e-84 | FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252 | p60@ZBTB38 |
| 1.28e-84 | FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252 | p60@ZBTB38 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304 | p@chr2:218192853..218192858, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304 | p@chr2:218192853..218192858, - |
| 4.68e-66 | FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9 | p@chr1:163045452..163045464, + |
| 4.68e-66 | FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9 | p@chr1:163045452..163045464, + |
| 2.43e-60 | FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22 | p3@KIAA1644 |
| 2.43e-60 | FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22 | p3@KIAA1644 |
| 4.17e-55 | FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91 | p9@ADAM23 |
| 4.17e-55 | FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91 | p9@ADAM23 |
| 1.41e-46 | FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7eb | p10@PLAT |
| 1.41e-46 | FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7eb | p10@PLAT |
| 9.77e-45 | FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15 | p@chr7:12134329..12134354, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15 | p@chr7:12134329..12134354, - |
| 9.77e-45 | FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15 | p@chr2:218193183..218193196, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15 | p@chr2:218193183..218193196, - |
| 6.94e-44 | FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297 | p@chr6:86200265..86200276, + |
| 6.94e-44 | FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297 | p@chr6:86200265..86200276, + |
| 1.23e-38 | FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69 | p18@STS |
| 1.23e-38 | FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69 | p18@STS |
| 1.85e-36 | FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4 | p@chr6:86204236..86204247, + |
| 1.85e-36 | FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4 | p@chr6:86204236..86204247, + |
| 2.98e-36 | FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35 | p@chr1:198203826..198203841, + |
| 2.98e-36 | FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35 | p@chr1:198203826..198203841, + |
| 4.66e-34 | FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82 | p2@RXFP2 |
| 4.66e-34 | FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82 | p2@RXFP2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806 | p13@MAST2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806 | p53@FAT1 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806 | p@chr3:132975822..132975848, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806 | p@chr7:12134356..12134370, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806 | p1@ENST00000504993 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806 | p@chr11:102712977..102712984, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806 | p@chr6:130763941..130763951, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806 | p@chr3:132975822..132975848, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806 | p@chr7:12134356..12134370, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806 | p1@ENST00000504993 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806 | p@chr11:102712977..102712984, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806 | p13@MAST2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806 | p@chr6:130763941..130763951, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806 | p53@FAT1 |
| 9.1e-34 | FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86d | p3@RXFP2 |
| 9.1e-34 | FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86d | p3@RXFP2 |
| 8.26e-33 | FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37 | p@chr21:30000326..30000330, + |
| 8.26e-33 | FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37 | p@chr21:30000326..30000330, + |
| 2.41e-32 | FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587 | p1@AB385516 |
| 2.41e-32 | FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587 | p1@AB385516 |
| 1.3e-31 | FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6 | p9@PLAT |
| 1.3e-31 | FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6 | p9@PLAT |
| 7.37e-31 | FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfb | p10@SPEG |
| 7.37e-31 | FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfb | p10@SPEG |
| 1.0e-30 | FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18 | p4@ENST00000470747 |
| 1.0e-30 | FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18 | p4@ENST00000470747 |
| 1.71e-30 | FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cd | p@chr8:42033253..42033264, - |
| 1.71e-30 | FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cd | p@chr8:42033253..42033264, - |
| 1.98e-30 | FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0 | p51@ZBTB38 |
| 1.98e-30 | FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0 | p51@ZBTB38 |
| 3.59e-30 | FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2 | p@chr10:90974443..90974454, - |
| 3.59e-30 | FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2 | p@chr10:90974443..90974454, - |
| 8.26e-30 | FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7 | p@chr7:84349931..84349955, - |
| 8.26e-30 | FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7 | p@chr7:84349931..84349955, - |
| 1.8e-29 | FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828 | p@chr9:106854088..106854104, - |
| 1.8e-29 | FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828 | p@chr9:106854088..106854104, - |
| 6.14e-29 | FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4 | p39@DCBLD2 |
| 6.14e-29 | FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4 | p39@DCBLD2 |
| 6.28e-29 | FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436 | p@chr10:90988088..90988122, - |
| 6.28e-29 | FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436 | p@chr10:90988088..90988122, - |
| 6.84e-28 | FFCP PHASE2:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88dd | p1@ENST00000420762 |
| 6.84e-28 | FFCP PHASE1:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88dd | p1@ENST00000420762 |
| 8.12e-28 | FFCP PHASE1:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0ed | p6@WFS1 |
| 8.12e-28 | FFCP PHASE2:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0ed | p6@WFS1 |
| 9.35e-28 | FFCP PHASE2:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2 | p6@PLAT |
| 9.35e-28 | FFCP PHASE1:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2 | p6@PLAT |
| 1.06e-27 | FFCP PHASE2:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04 | p13@RBM24 |
| 1.06e-27 | FFCP PHASE1:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04 | p@chr3:151871166..151871172, + |
| 1.06e-27 | FFCP PHASE1:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04 | p13@RBM24 |
| 1.06e-27 | FFCP PHASE2:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04 | p@chr3:151871166..151871172, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4 | p16@MITF |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4 | p16@MITF |
| 2.72e-27 | FFCP PHASE2:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954 | p@chr7:129962463..129962477, + |
| 2.72e-27 | FFCP PHASE1:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954 | p@chr7:129962463..129962477, + |
| 2.98e-27 | FFCP PHASE1:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682 | p@chr1:163042618..163042628, + |
| 2.98e-27 | FFCP PHASE2:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682 | p@chr1:163042618..163042628, + |
| 3.26e-27 | FFCP PHASE1:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4 | p@chr12:75875762..75875778, + |
| 3.26e-27 | FFCP PHASE2:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4 | p@chr12:75875762..75875778, + |
| 4.65e-27 | FFCP PHASE1:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3 | p12@TGFB3 |
| 4.65e-27 | FFCP PHASE2:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3 | p12@TGFB3 |
| 5.31e-27 | FFCP PHASE2:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964c | p@chr10:90975757..90975768, - |
| 5.31e-27 | FFCP PHASE1:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964c | p@chr10:90975757..90975768, - |
