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{{DOID
{{DOID
|id=DOID:3307
|alt_id=
|name=teratoma
|namespace=
|def="A germ cell and embryonal cancer that is an encapsulated tumor with tissue or organ components resembling normal derivatives of all three germ layers." [url:http\://en.wikipedia.org/wiki/Teratoma]
|xref=
|is_a=DOID:3095
|synonym="teratoma" EXACT [NCI2004_11_17:C3403];;"teratoma" EXACT [CSP2005:2000-4962];;"teratoma NOS" EXACT [SNOMEDCT_2005_07_31:189848007];;"teratoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189846006];;"teratoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:55818009];;"Teratomas (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189844009]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A germ cell and embryonal cancer that is an encapsulated tumor with tissue or organ components resembling normal derivatives of all three germ layers." [url:http://en.wikipedia.org/wiki/Teratoma]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3307
|is_a=DOID:3095
|is_obsolete=
|located_in=
|located_in=
|name=teratoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="teratoma" EXACT [NCI2004_11_17:C3403];;"teratoma" EXACT [CSP2005:2000-4962];;"teratoma NOS" EXACT [SNOMEDCT_2005_07_31:189848007];;"teratoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189846006];;"teratoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:55818009];;"Teratomas (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189844009]
|union_of=
|xref=MSH:D013724;;NCI:C3403;;SNOMEDCT_2010_1_31:189844009;;SNOMEDCT_2010_1_31:189846006;;SNOMEDCT_2010_1_31:189848007;;SNOMEDCT_2010_1_31:55818009;;UMLS_CUI:C0039538
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:teratoma
Namespace:FANTOM
Definition:"A germ cell and embryonal cancer that is an encapsulated tumor with tissue or organ components resembling normal derivatives of all three germ layers." [url:http://en.wikipedia.org/wiki/Teratoma]
Xrefs:
links:

MSH:D013724
NCI:C3403
SNOMEDCT_2010_1_31:189844009
SNOMEDCT_2010_1_31:189846006
SNOMEDCT_2010_1_31:189848007
SNOMEDCT_2010_1_31:55818009

UMLS_CUI:C0039538
Synonyms: "teratoma" EXACT [NCI2004_11_17:C3403]
"teratoma" EXACT [CSP2005:2000-4962]
"teratoma NOS" EXACT [SNOMEDCT_2005_07_31:189848007]
"teratoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189846006]
"teratoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:55818009]
"Teratomas (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189844009]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3095(germ cell and embryonal cancer)



Children


is a:FF:10694-109G1 (tridermal teratoma cell line:HGRT),FF:10695-109G2 (sacrococcigeal teratoma cell line:HTST)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3307 (teratoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr14:53968294..53968300,-#_61bafa539f19b3842ef5ace14a26c40ap@chr14:53968294..53968300, -
1.55e-98FFCP PHASE2:Hg19::chr17:60085374..60085376,-#_61bafa539f19b3842ef5ace14a26c40ap1@LOC100129112
1.55e-98FFCP PHASE1:Hg19::chr14:53968294..53968300,-#_61bafa539f19b3842ef5ace14a26c40ap@chr14:53968294..53968300, -
1.55e-98FFCP PHASE1:Hg19::chr17:60085374..60085376,-#_61bafa539f19b3842ef5ace14a26c40ap1@LOC100129112
7.41e-67FFCP PHASE2:Hg19::chr5:134369177..134369188,+#_73178ca70fb6e9fa54d79c5453b850fbp2@ENST00000505828
7.41e-67FFCP PHASE1:Hg19::chr5:134369177..134369188,+#_73178ca70fb6e9fa54d79c5453b850fbp2@ENST00000505828
1.04e-66FFCP PHASE1:Hg19::chr7:105865829..105865838,-#_63b28e333a4d264b0165faf25cd1ca52p@chr7:105865829..105865838, -
1.04e-66FFCP PHASE2:Hg19::chr7:105865829..105865838,-#_63b28e333a4d264b0165faf25cd1ca52p@chr7:105865829..105865838, -
3.58e-57FFCP PHASE2:Hg19::chr4:148885940..148885946,+#_d3a6340551d49aa41063d96e7a68813cp@chr4:148885940..148885946, +
3.58e-57FFCP PHASE1:Hg19::chr4:148885940..148885946,+#_d3a6340551d49aa41063d96e7a68813cp@chr4:148885940..148885946, +
2.74e-50FFCP PHASE2:Hg19::chr10:27951158..27951161,-#_ceb8ca59bb1ca647015d4b1c0b821be1p@chr10:27951158..27951161, -
2.74e-50FFCP PHASE1:Hg19::chr10:27951158..27951161,-#_ceb8ca59bb1ca647015d4b1c0b821be1p@chr10:27951158..27951161, -
4.52e-50FFCP PHASE2:Hg19::chr10:63700100..63700112,+#_09e655d3e50e641930672a34bf091d83p@chr10:63700100..63700112, +
4.52e-50FFCP PHASE1:Hg19::chr9:16474824..16474836,-#_09e655d3e50e641930672a34bf091d83p@chr9:16474824..16474836, -
4.52e-50FFCP PHASE1:Hg19::chr10:63700100..63700112,+#_09e655d3e50e641930672a34bf091d83p@chr10:63700100..63700112, +
4.52e-50FFCP PHASE1:Hg19::chr9:16539885..16539894,-#_09e655d3e50e641930672a34bf091d83p@chr9:16539885..16539894, -
4.52e-50FFCP PHASE2:Hg19::chr14:65410925..65410939,-#_09e655d3e50e641930672a34bf091d83p@chr14:65410925..65410939, -
4.52e-50FFCP PHASE1:Hg19::chr14:65410925..65410939,-#_09e655d3e50e641930672a34bf091d83p@chr14:65410925..65410939, -
4.52e-50FFCP PHASE2:Hg19::chr9:16474824..16474836,-#_09e655d3e50e641930672a34bf091d83p@chr9:16474824..16474836, -
4.52e-50FFCP PHASE2:Hg19::chr15:71682167..71682168,+#_09e655d3e50e641930672a34bf091d83p@chr15:71682167..71682168, +
4.52e-50FFCP PHASE1:Hg19::chr15:71682167..71682168,+#_09e655d3e50e641930672a34bf091d83p@chr15:71682167..71682168, +
4.52e-50FFCP PHASE2:Hg19::chr9:16539885..16539894,-#_09e655d3e50e641930672a34bf091d83p@chr9:16539885..16539894, -
2.55e-45FFCP PHASE2:Hg19::chr8:119964499..119964504,+#_248e62aa7561b3b99b07935f40a61101p@chr8:119964499..119964504, +
2.55e-45FFCP PHASE1:Hg19::chr8:119964499..119964504,+#_248e62aa7561b3b99b07935f40a61101p@chr8:119964499..119964504, +
5.0e-45FFCP PHASE2:Hg19::chr15:37386163..37386175,-#_a7760c2e710a831275758a8897491492p52@MEIS2
5.0e-45FFCP PHASE1:Hg19::chr15:37386163..37386175,-#_a7760c2e710a831275758a8897491492p52@MEIS2
1.89e-37FFCP PHASE2:Hg19::chr4:99408386..99408389,-#_17cec5bf7c047a170590651da1230c58p@chr4:99408386..99408389, -
1.89e-37FFCP PHASE1:Hg19::chr4:99408386..99408389,-#_17cec5bf7c047a170590651da1230c58p@chr4:99408386..99408389, -
3.28e-37FFCP PHASE2:Hg19::chr12:72667203..72667215,+#_9d0934923d02c615ce712545bdb0a7f9p11@TRHDE
3.28e-37FFCP PHASE1:Hg19::chr12:72667203..72667215,+#_9d0934923d02c615ce712545bdb0a7f9p11@TRHDE
1.84e-34FFCP PHASE2:Hg19::chr4:120549047..120549058,-#_b82177fdbe31b48911dd05abbea565a6p18@PDE5A
1.84e-34FFCP PHASE1:Hg19::chr4:120549047..120549058,-#_b82177fdbe31b48911dd05abbea565a6p18@PDE5A
3.06e-34FFCP PHASE2:Hg19::chr1:156417689..156417693,-#_b79cfee872573c737c73d9852e44ba72p@chr1:156417689..156417693, -
3.06e-34FFCP PHASE1:Hg19::chr1:156417689..156417693,-#_b79cfee872573c737c73d9852e44ba72p@chr1:156417689..156417693, -
3.61e-34FFCP PHASE2:Hg19::chr2:179315588..179315596,-#_b99be99ba678e6bf0efbbba86de8f0abp10@PRKRA
3.61e-34FFCP PHASE1:Hg19::chr2:179315588..179315596,-#_b99be99ba678e6bf0efbbba86de8f0abp10@PRKRA
5.04e-34FFCP PHASE1:Hg19::chr11:2407761..2407778,+#_9d3f68691a66d94db9112ea66fbf650dp26@CD81
5.04e-34FFCP PHASE1:Hg19::chr15:71840450..71840454,+#_9d3f68691a66d94db9112ea66fbf650dp@chr15:71840450..71840454, +
5.04e-34FFCP PHASE1:Hg19::chr16:74532763..74532767,-#_9d3f68691a66d94db9112ea66fbf650dp@chr16:74532763..74532767, -
5.04e-34FFCP PHASE2:Hg19::chr5:151573968..151573973,+#_9d3f68691a66d94db9112ea66fbf650dp@chr5:151573968..151573973, +
5.04e-34FFCP PHASE1:Hg19::chr5:134589628..134589644,+#_9d3f68691a66d94db9112ea66fbf650dp@chr5:134589628..134589644, +
5.04e-34FFCP PHASE2:Hg19::chr8:62381271..62381276,-#_9d3f68691a66d94db9112ea66fbf650dp@chr8:62381271..62381276, -
5.04e-34FFCP PHASE2:Hg19::chr20:12989828..12989835,+#_9d3f68691a66d94db9112ea66fbf650dp7@SPTLC3
5.04e-34FFCP PHASE2:Hg19::chr19:13397481..13397502,-#_9d3f68691a66d94db9112ea66fbf650dp@chr19:13397481..13397502, -
5.04e-34FFCP PHASE1:Hg19::chr8:62381271..62381276,-#_9d3f68691a66d94db9112ea66fbf650dp@chr8:62381271..62381276, -
5.04e-34FFCP PHASE1:Hg19::chr5:151573968..151573973,+#_9d3f68691a66d94db9112ea66fbf650dp@chr5:151573968..151573973, +
5.04e-34FFCP PHASE2:Hg19::chr16:74532763..74532767,-#_9d3f68691a66d94db9112ea66fbf650dp@chr16:74532763..74532767, -
5.04e-34FFCP PHASE2:Hg19::chr5:134589628..134589644,+#_9d3f68691a66d94db9112ea66fbf650dp@chr5:134589628..134589644, +
5.04e-34FFCP PHASE2:Hg19::chr11:2407761..2407778,+#_9d3f68691a66d94db9112ea66fbf650dp26@CD81
5.04e-34FFCP PHASE2:Hg19::chr15:71840450..71840454,+#_9d3f68691a66d94db9112ea66fbf650dp@chr15:71840450..71840454, +
5.04e-34FFCP PHASE1:Hg19::chr20:12989828..12989835,+#_9d3f68691a66d94db9112ea66fbf650dp7@SPTLC3
5.04e-34FFCP PHASE1:Hg19::chr19:13397481..13397502,-#_9d3f68691a66d94db9112ea66fbf650dp@chr19:13397481..13397502, -
7.05e-34FFCP PHASE1:Hg19::chr15:64423903..64423911,+#_517029a17090f148eba4bcc3f84387a6p9@SNX1
7.05e-34FFCP PHASE1:Hg19::chr20:43838233..43838282,+#_517029a17090f148eba4bcc3f84387a6p@chr20:43838233..43838282, +
7.05e-34FFCP PHASE2:Hg19::chr12:69078351..69078356,+#_517029a17090f148eba4bcc3f84387a6p1@ENST00000481005
7.05e-34FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_517029a17090f148eba4bcc3f84387a6p20@ARSJ
7.05e-34FFCP PHASE2:Hg19::chr22:48982101..48982114,-#_517029a17090f148eba4bcc3f84387a6p@chr22:48982101..48982114, -
7.05e-34FFCP PHASE1:Hg19::chr12:69078351..69078356,+#_517029a17090f148eba4bcc3f84387a6p1@ENST00000481005
7.05e-34FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_517029a17090f148eba4bcc3f84387a6p20@ARSJ
7.05e-34FFCP PHASE1:Hg19::chr22:48982101..48982114,-#_517029a17090f148eba4bcc3f84387a6p@chr22:48982101..48982114, -
7.05e-34FFCP PHASE2:Hg19::chr20:43838233..43838282,+#_517029a17090f148eba4bcc3f84387a6p@chr20:43838233..43838282, +
7.05e-34FFCP PHASE2:Hg19::chr15:64423903..64423911,+#_517029a17090f148eba4bcc3f84387a6p9@SNX1
3.92e-32FFCP PHASE1:Hg19::chr1:246147829..246147864,-#_27d25cbac9925fe4f9ccbeffebb03ae8p@chr1:246147829..246147864, -
3.92e-32FFCP PHASE2:Hg19::chr1:246147829..246147864,-#_27d25cbac9925fe4f9ccbeffebb03ae8p@chr1:246147829..246147864, -
1.17e-31FFCP PHASE1:Hg19::chr2:217537210..217537213,-#_5fb47740b105533c8e4f45c0e39d58b0p54@IGFBP5
1.17e-31FFCP PHASE2:Hg19::chr2:217537210..217537213,-#_5fb47740b105533c8e4f45c0e39d58b0p54@IGFBP5
1.24e-29FFCP PHASE1:Hg19::chr16:86498111..86498151,-#_cc0bffee2d01be2be006d81acc5f33a3p@chr16:86498111..86498151, -
1.24e-29FFCP PHASE2:Hg19::chr16:86498111..86498151,-#_cc0bffee2d01be2be006d81acc5f33a3p@chr16:86498111..86498151, -
3.94e-29FFCP PHASE2:Hg19::chr15:33025921..33025938,+#_29571038f2d0f52e79443d296b5e2de2p@chr15:33025921..33025938, +
3.94e-29FFCP PHASE1:Hg19::chr15:33025921..33025938,+#_29571038f2d0f52e79443d296b5e2de2p@chr15:33025921..33025938, +
3.6e-28FFCP PHASE2:Hg19::chr2:217540334..217540344,-#_e0e69b1959044839f53a69f802ee9a07p59@IGFBP5
3.6e-28FFCP PHASE1:Hg19::chr2:217540334..217540344,-#_e0e69b1959044839f53a69f802ee9a07p59@IGFBP5
1.67e-26FFCP PHASE2:Hg19::chr13:92602539..92602541,+#_46ef1b90fff1a655e8531e2a410fca55p@chr13:92602539..92602541, +
1.67e-26FFCP PHASE1:Hg19::chr13:92602539..92602541,+#_46ef1b90fff1a655e8531e2a410fca55p@chr13:92602539..92602541, +
3.16e-26FFCP PHASE1:Hg19::chr19:13617378..13617399,-#_0bf4f2308f18cde4973533a0ffd2166cp8@CACNA1A
3.16e-26FFCP PHASE2:Hg19::chr19:13617378..13617399,-#_0bf4f2308f18cde4973533a0ffd2166cp8@CACNA1A
3.59e-26FFCP PHASE1:Hg19::chr6:56311952..56311957,-#_91b68c93d82f1491bca3290e83b19678p@chr6:56311952..56311957, -
3.59e-26FFCP PHASE1:Hg19::chr2:189922013..189922016,-#_91b68c93d82f1491bca3290e83b19678p@chr2:189922013..189922016, -
3.59e-26FFCP PHASE2:Hg19::chr6:56311952..56311957,-#_91b68c93d82f1491bca3290e83b19678p@chr6:56311952..56311957, -
3.59e-26FFCP PHASE2:Hg19::chr2:189922013..189922016,-#_91b68c93d82f1491bca3290e83b19678p@chr2:189922013..189922016, -
4.32e-26FFCP PHASE1:Hg19::chr10:44285890..44285891,-#_cf54ac2009e65766c82f994936a4a0bdp1@HNRNPA3P1
4.32e-26FFCP PHASE2:Hg19::chr13:33686841..33686842,-#_cf54ac2009e65766c82f994936a4a0bdp@chr13:33686841..33686842, -
4.32e-26FFCP PHASE1:Hg19::chr13:33686841..33686842,-#_cf54ac2009e65766c82f994936a4a0bdp@chr13:33686841..33686842, -
4.32e-26FFCP PHASE2:Hg19::chr10:44285890..44285891,-#_cf54ac2009e65766c82f994936a4a0bdp1@HNRNPA3P1
5.56e-26FFCP PHASE2:Hg19::chr12:69996323..69996329,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr12:69996323..69996329, +
5.56e-26FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr18:65175930..65175941, +
5.56e-26FFCP PHASE2:Hg19::chr6:75916067..75916078,-#_c24b00e831e6cd5ddad00f9f46bc9db1p30@COL12A1
5.56e-26FFCP PHASE2:Hg19::chr3:114061988..114061990,-#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr3:114061988..114061990, -
5.56e-26FFCP PHASE2:Hg19::chr9:116327902..116327908,+#_c24b00e831e6cd5ddad00f9f46bc9db1p35@RGS3
5.56e-26FFCP PHASE1:Hg19::chr21:22550109..22550126,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr21:22550109..22550126, +
5.56e-26FFCP PHASE2:Hg19::chr9:94454113..94454115,-#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr9:94454113..94454115, -
5.56e-26FFCP PHASE2:Hg19::chr15:74914322..74914330,-#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr15:74914322..74914330, -
5.56e-26FFCP PHASE2:Hg19::chr14:105332461..105332506,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr14:105332461..105332506, +
5.56e-26FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr2:33519090..33519092, +
5.56e-26FFCP PHASE1:Hg19::chr12:69996323..69996329,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr12:69996323..69996329, +
5.56e-26FFCP PHASE2:Hg19::chr10:63878539..63878542,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr10:63878539..63878542, +
5.56e-26FFCP PHASE2:Hg19::chr3:41313860..41313862,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr3:41313860..41313862, +
5.56e-26FFCP PHASE1:Hg19::chr14:105332461..105332506,+#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr14:105332461..105332506, +
5.56e-26FFCP PHASE1:Hg19::chr15:74914322..74914330,-#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr15:74914322..74914330, -
5.56e-26FFCP PHASE1:Hg19::chr3:114061988..114061990,-#_c24b00e831e6cd5ddad00f9f46bc9db1p@chr3:114061988..114061990, -

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