Personal tools

UBERON:0000058: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000058 |name=duct |namespace= |def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their dest...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000058
|alt_id=
|name=duct
|namespace=
|def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
|xref=FMA:30320;;galen:Duct;;ncithesaurus:Duct;;XAO:0004000;;ZFA:0005171
|is_a=UBERON:0004111
|synonym="anatomical duct" EXACT [];;"exocrine duct" RELATED [];;"exocrine gland duct" RELATED []
|comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
|comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000058
|is_a=UBERON:0000025
|is_obsolete=
|located_in=
|located_in=
|name=duct
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=vertebrate_core
|synonym="anatomical duct" EXACT [];;"exocrine duct" RELATED [];;"exocrine gland duct" RELATED []
|union_of=
|xref=AAO:0011123;;FMA:30320;;galen:Duct;;ncithesaurus:Duct;;TAO:0005171;;XAO:0004000;;ZFA:0005171
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:duct
Namespace:FANTOM
Definition:"A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
Xrefs:
links:

AAO:0011123
FMA:30320
galen:Duct
ncithesaurus:Duct
TAO:0005171
XAO:0004000

ZFA:0005171
Synonyms: "anatomical duct" EXACT []
"exocrine duct" RELATED []
"exocrine gland duct" RELATED []
Comments:TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000025(tube)



Children

is a:UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 ()
part of:CL:0000068 (duct epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.28e-50FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585020..63585025, -
5.28e-50FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585020..63585025, -
5.28e-50FFCP PHASE2:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr5:145240607..145240622, -
5.28e-50FFCP PHASE1:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr5:145240607..145240622, -
5.28e-50FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585048..63585062, -
5.28e-50FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585048..63585062, -
6.59e-38FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bbp4@Spink12
6.59e-38FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bbp4@Spink12
6.59e-38FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bbp@chr14:63585028..63585037, -
6.59e-38FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bbp@chr10:127470655..127470664, +
6.59e-38FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bbp@chr14:63585028..63585037, -
6.59e-38FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bbp4@Defb42
6.59e-38FFCP PHASE2:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620140..30620158, +
6.59e-38FFCP PHASE1:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620140..30620158, +
6.59e-38FFCP PHASE1:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bbp@chrX:154140764..154140773, +
6.59e-38FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bbp@chr10:127470655..127470664, +
6.59e-38FFCP PHASE2:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bbp@chrX:154140764..154140773, +
6.59e-38FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bbp4@Defb42
6.59e-38FFCP PHASE2:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620232..30620242, +
6.59e-38FFCP PHASE1:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620232..30620242, +
9.08e-34FFCP PHASE1:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52p@chr17:46686583..46686590, -
9.08e-34FFCP PHASE2:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52p@chr17:46686583..46686590, -
9.25e-34FFCP PHASE1:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77p1@9230102O04Rik
9.25e-34FFCP PHASE2:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77p1@9230102O04Rik
4.52e-32FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618661..125618677, +
4.52e-32FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617636..125617646, +
4.52e-32FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9p3@PATE2
4.52e-32FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9p2@PATE1
4.52e-32FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9p@chrX:112044378..112044412, -
4.52e-32FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618739..125618756, -
4.52e-32FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9p3@EDDM3A
4.52e-32FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69950851..69950887, +
4.52e-32FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618495..125618517, +
4.52e-32FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9p1@LCN9
4.52e-32FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9p3@EDDM3A
4.52e-32FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69950851..69950887, +
4.52e-32FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617607..125617617, +
4.52e-32FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9p2@PATE2
4.52e-32FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9p@chr3:140961228..140961237, +
4.52e-32FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618661..125618677, +
4.52e-32FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9p1@LCN9
4.52e-32FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9p@chr15:25165150..25165161, +
4.52e-32FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617636..125617646, +
4.52e-32FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9p@chr15:25165150..25165161, +
4.52e-32FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9p@chr14:105935020..105935028, -
4.52e-32FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9p@chr14:105935020..105935028, -
4.52e-32FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9p3@PATE2
4.52e-32FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69951723..69951737, +
4.52e-32FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9p2@PATE1
4.52e-32FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618739..125618756, -
4.52e-32FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618495..125618517, +
4.52e-32FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9p2@EDDM3A
4.52e-32FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9p@chrX:112044378..112044412, -
4.52e-32FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617607..125617617, +
4.52e-32FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9p2@EDDM3A
4.52e-32FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9p@chr3:140961228..140961237, +
4.52e-32FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69951723..69951737, +
4.52e-32FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9p2@PATE2
8.6e-32FFCP PHASE1:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1bp3@Gpr64
8.6e-32FFCP PHASE2:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1bp3@Gpr64
5.74e-29FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31p@chr2:152388713..152388729, +
5.74e-29FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31p@chr2:152388713..152388729, +
8.27e-29FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4p4@Cyb561
8.27e-29FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4p@chr11:76361451..76361499, +
8.27e-29FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4p2@D730048I06Rik, p2@Gm17727
8.27e-29FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4p4@Cyb561
8.27e-29FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4p@chr11:76361451..76361499, +
8.27e-29FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4p2@D730048I06Rik, p2@Gm17727
1.03e-28FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26732045..26732085, +
1.03e-28FFCP PHASE1:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr5:145240547..145240560, -
1.03e-28FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26611246..26611253, -
1.03e-28FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8p2@Eddm3b
1.03e-28FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26732045..26732085, +
1.03e-28FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8p2@Eddm3b
1.03e-28FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr14:63627556..63627564, -
1.03e-28FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26611246..26611253, -
1.03e-28FFCP PHASE2:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr5:145240547..145240560, -
1.03e-28FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr14:63627556..63627564, -
1.28e-28FFCP PHASE1:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264p@chr15:27418016..27418056, +
1.28e-28FFCP PHASE2:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264p@chr15:27418016..27418056, +
1.28e-28FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264p@chr2:69981027..69981032, +
1.28e-28FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264p@chr2:69981027..69981032, +
1.58e-28FFCP PHASE2:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929p@chr12:86818215..86818223, -
1.58e-28FFCP PHASE1:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929p@chr12:86818215..86818223, -
2.49e-28FFCP PHASE2:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99p2@ENST00000491264
2.49e-28FFCP PHASE1:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99p2@ENST00000491264
8.13e-27FFCP PHASE2:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbdp@chr17:171147..171161, +
8.13e-27FFCP PHASE1:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbdp@chr17:171147..171161, +
7.57e-26FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_b77a92ef88490d7e37654a5e57bc0927p4@Chrna10
7.57e-26FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_b77a92ef88490d7e37654a5e57bc0927p@chr9:100350777..100350782, +
7.57e-26FFCP PHASE1:Mm9::chr11:59845349..59845371,-#_b77a92ef88490d7e37654a5e57bc0927p@chr11:59845349..59845371, -
7.57e-26FFCP PHASE2:Mm9::chr8:19141471..19141518,-#_b77a92ef88490d7e37654a5e57bc0927p@chr8:19141471..19141518, -
7.57e-26FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_b77a92ef88490d7e37654a5e57bc0927p11@Tecta
7.57e-26FFCP PHASE1:Mm9::chr2:152302768..152302774,+#_b77a92ef88490d7e37654a5e57bc0927p4@Defb20
7.57e-26FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_b77a92ef88490d7e37654a5e57bc0927p@chr1:90155707..90155720, +
7.57e-26FFCP PHASE2:Mm9::chr5:31379550..31379559,+#_b77a92ef88490d7e37654a5e57bc0927p@chr5:31379550..31379559, +
7.57e-26FFCP PHASE1:Mm9::chr13:21385325..21385329,-#_b77a92ef88490d7e37654a5e57bc0927p@chr13:21385325..21385329, -
7.57e-26FFCP PHASE2:Mm9::chr5:100634942..100634968,+#_b77a92ef88490d7e37654a5e57bc0927p@chr5:100634942..100634968, +
7.57e-26FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_b77a92ef88490d7e37654a5e57bc0927p@chrX:154140800..154140810, +
7.57e-26FFCP PHASE2:Mm9::chr9:35651650..35651673,-#_b77a92ef88490d7e37654a5e57bc0927p4@9230110F15Rik

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000058&oldid=3277046"