UBERON:0000117: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A tube in the respiratory tract." [GO:0030323] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000117 | |||
|is_a=UBERON:0000025 ;;UBERON:0004119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=respiratory tube | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000065 | |part_of=UBERON:0000065 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:06, 12 September 2014
| Name: | respiratory tube |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A tube in the respiratory tract." [GO:0030323] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000025(tube),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000065(respiratory tract) |
Children
| is a: | UBERON:0002169 (alveolar sac),UBERON:0002185 (bronchus),UBERON:0003126 (trachea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000117 (respiratory tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.5e-81 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513 | p4@Tbx4 |
| 3.5e-81 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513 | p4@Tbx4 |
| 1.94e-76 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702b | p1@ENSMUST00000134305 |
| 1.94e-76 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702b | p1@ENSMUST00000134305 |
| 6.06e-75 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 6.06e-75 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 7.98e-75 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cf | p6@Tbx4 |
| 7.98e-75 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cf | p6@Tbx4 |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr11:59457994..59457997, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr8:94878479..94878503, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr12:57598716..57598720, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr8:94878479..94878503, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr11:59457994..59457997, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cf | p@chr12:57598716..57598720, - |
| 3.06e-70 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014 | p8@Nkx2-1 |
| 3.06e-70 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014 | p8@Nkx2-1 |
| 3.48e-70 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852e | p2@E030019B13Rik |
| 3.48e-70 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852e | p2@E030019B13Rik |
| 3.96e-70 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5 | p10@Nebl |
| 3.96e-70 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5 | p10@Nebl |
| 4.5e-70 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0b | p9@Nkx2-1 |
| 4.5e-70 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0b | p9@Nkx2-1 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122d | p@chr12:57598537..57598547, - |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122d | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122d | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122d | p3@Trpm6 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122d | p3@Trpm6 |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122d | p@chr12:57598537..57598547, - |
| 1.11e-68 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8cc | p@chr14:115241755..115241762, - |
| 1.11e-68 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8cc | p@chr14:115241755..115241762, - |
| 1.27e-68 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5d | p@chr4:138812999..138813015, + |
| 1.27e-68 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5d | p@chr4:138812999..138813015, + |
| 4.47e-68 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcd | p@chr5:120282691..120282701, + |
| 4.47e-68 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcd | p@chr5:120282691..120282701, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725 | p4@Sftpb |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725 | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725 | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725 | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725 | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725 | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725 | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725 | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725 | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725 | p4@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725 | p@chr14:70921265..70921285, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725 | p@chr14:70921265..70921285, - |
| 5.08e-66 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eae | p4@E030019B13Rik |
| 5.08e-66 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eae | p4@E030019B13Rik |
| 4.92e-64 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7 | p@chr14:70922007..70922052, + |
| 4.92e-64 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7 | p@chr14:70922007..70922052, + |
| 4.92e-64 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7 | p@chr12:57623172..57623185, - |
| 4.92e-64 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7 | p@chr12:57623172..57623185, - |
| 5.59e-64 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9 | p@chr5:28785436..28785450, - |
| 5.59e-64 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9 | p@chr5:28785436..28785450, - |
| 6.35e-64 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998 | p@chr14:70922459..70922482, - |
| 6.35e-64 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998 | p@chr14:70922459..70922482, - |
| 2.55e-63 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267 | p4@Etv5 |
| 2.55e-63 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267 | p4@Etv5 |
| 1.43e-62 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543 | p@chr12:57376690..57376716, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543 | p@chr14:70923240..70923251, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543 | p@chr12:57376690..57376716, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72263977..72263993, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543 | p@chr6:72263977..72263993, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543 | p@chr14:70923240..70923251, - |
| 1.63e-62 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39e | p@chr6:72264609..72264653, - |
| 1.63e-62 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39e | p@chr6:72264609..72264653, - |
| 1.87e-62 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6 | p@chr6:129378567..129378573, - |
| 1.87e-62 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6 | p@chr6:129378567..129378573, - |
| 1.91e-62 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2ea | p16@Pde5a |
| 1.91e-62 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2ea | p16@Pde5a |
| 3.02e-62 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46b | p7@Nkx2-1 |
| 3.02e-62 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46b | p7@Nkx2-1 |
| 5.06e-62 | FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404f | p@chr12:57636936..57636953, - |
| 5.06e-62 | FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404f | p@chr12:57636936..57636953, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_6761674fca075e9247dbe36e9bd710fa | p6@E030019B13Rik |
| 7.58e-62 | FFCP PHASE2:Mm9::chr14:41949922..41949935,+#_6761674fca075e9247dbe36e9bd710fa | p@chr14:41949922..41949935, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_6761674fca075e9247dbe36e9bd710fa | p@chr14:70931508..70931519, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_6761674fca075e9247dbe36e9bd710fa | p@chr2:152591095..152591110, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr17:67043399..67043410,-#_6761674fca075e9247dbe36e9bd710fa | p9@Ptprm |
| 7.58e-62 | FFCP PHASE1:Mm9::chr14:41949964..41949979,+#_6761674fca075e9247dbe36e9bd710fa | p@chr14:41949964..41949979, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_6761674fca075e9247dbe36e9bd710fa | p@chr6:72264657..72264693, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr16:19673260..19673277,-#_6761674fca075e9247dbe36e9bd710fa | p@chr16:19673260..19673277, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr5:28785382..28785394,-#_6761674fca075e9247dbe36e9bd710fa | p@chr5:28785382..28785394, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr6:72259749..72259765,+#_6761674fca075e9247dbe36e9bd710fa | p@chr6:72259749..72259765, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr6:72264657..72264693,-#_6761674fca075e9247dbe36e9bd710fa | p@chr6:72264657..72264693, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr12:57630433..57630438,-#_6761674fca075e9247dbe36e9bd710fa | p6@E030019B13Rik |
