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{{UBERON
{{UBERON
|id=UBERON:0000165
|alt_id=
|name=mouth
|anatomical_img_id=FMA:49184
|namespace=
|def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
|xref=AAO:0010355;;BTO:0001090;;EFO:0000825;;FBbt:00003126;;FMA:49184;;GAID:75;;galen:Mouth;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg;;MA:0002474;;MAT:0000038;;MESH:A.01.456.505.631;;MIAA:0000038;;OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA;;TADS:0000040;;TAO:0000547;;TGMA:0000131;;VHOG:0000812;;XAO:0003029;;ZFA:0000547
|is_a=UBERON:0001444;;UBERON:0004119;;UBERON:0004121
|synonym="adult mouth" EXACT [];;"cavitas oris" RELATED [BTO:0001090];;"cavum oris" RELATED [BTO:0001090];;"mouth cavity" RELATED [BTO:0001090];;"oral vestibule" RELATED [BTO:0001090];;"regio oralis" EXACT [FMA:49184, FMA:TA];;"rima oris" RELATED [BTO:0001090];;"stoma" RELATED [];;"vestibule of mouth" RELATED [BTO:0001090];;"vestibulum oris" RELATED [BTO:0001090]
|comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
|comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
|subset=major_organ;;uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000930
|develops_from=UBERON:0000930
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000165
|is_a=UBERON:0004906
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001555
|name=mouth
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string
|subset=major_organ;;uberon_slim;;vertebrate_core
|synonym="adult mouth" EXACT [];;"cavitas oris" RELATED [BTO:0001090];;"cavum oris" RELATED [BTO:0001090];;"mouth cavity" RELATED [BTO:0001090];;"oral vestibule" RELATED [BTO:0001090];;"os, cavital oralis" RELATED LATIN [Wikipedia:Mouth];;"regio oralis" EXACT [FMA:49184, FMA:TA];;"rima oris" RELATED [BTO:0001090];;"stoma" RELATED [];;"vestibule of mouth" RELATED [BTO:0001090];;"vestibulum oris" RELATED [BTO:0001090]
|union_of=
|xref=AAO:0010355;;BTO:0001090;;EFO:0000825;;FBbt:00003126;;FMA:49184;;GAID:75;;galen:Mouth;;http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg;;MA:0002474;;MAT:0000038;;MESH:A.01.456.505.631;;MIAA:0000038;;OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA;;TADS:0000040;;TAO:0000547;;TGMA:0000131;;VHOG:0000812;;XAO:0003029;;ZFA:0000547
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:mouth
Namespace:FANTOM
Definition:"First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
Xrefs:
links:

AAO:0010355
BTO:0001090
EFO:0000825
FBbt:00003126
FMA:49184
GAID:75
galen:Mouth
[1]
[2]
MA:0002474
MAT:0000038
MESH:A.01.456.505.631
MIAA:0000038
OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
TADS:0000040
TAO:0000547
TGMA:0000131
VHOG:0000812
XAO:0003029

ZFA:0000547
Synonyms: "adult mouth" EXACT []
"cavitas oris" RELATED [BTO:0001090]
"cavum oris" RELATED [BTO:0001090]
"mouth cavity" RELATED [BTO:0001090]
"oral vestibule" RELATED [BTO:0001090]
"os, cavital oralis" RELATED LATIN [Wikipedia:Mouth]
"regio oralis" EXACT [FMA:49184, FMA:TA]
"rima oris" RELATED [BTO:0001090]
"stoma" RELATED []
"vestibule of mouth" RELATED [BTO:0001090]
"vestibulum oris" RELATED [BTO:0001090]
Comments:TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
Subset: major_organ
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004906(ectodermal part of digestive tract)
develops_from:UBERON:0000930(stomodeum)
part_of:UBERON:0000033(head)



Children

part of:UBERON:0000166 (oral opening),UBERON:0000167 (oral cavity),UBERON:0001723 (tongue),UBERON:0003729 (mouth mucosa),UBERON:0010047 (oral gland),UBERON:0010056 (future tongue),UBERON:0011595 (jaw region)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000165 (mouth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr15:91668686..91668696,+#_0dd8fdab0a69022d45c6f6588bc56faap2@Smgc
1.87e-86FFCP PHASE1:Mm9::chr15:91729805..91729815,+#_0dd8fdab0a69022d45c6f6588bc56faap@chr15:91729805..91729815, +
1.87e-86FFCP PHASE2:Mm9::chr15:91729805..91729815,+#_0dd8fdab0a69022d45c6f6588bc56faap@chr15:91729805..91729815, +
1.87e-86FFCP PHASE1:Mm9::chr12:57793900..57793908,-#_0dd8fdab0a69022d45c6f6588bc56faap@chr12:57793900..57793908, -
1.87e-86FFCP PHASE2:Mm9::chr12:57793900..57793908,-#_0dd8fdab0a69022d45c6f6588bc56faap@chr12:57793900..57793908, -
1.87e-86FFCP PHASE1:Mm9::chr15:91668686..91668696,+#_0dd8fdab0a69022d45c6f6588bc56faap2@Smgc
2.11e-67FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_80b66d9b90a70e2587ed48842c1fc718p@chr1:75599672..75599682, -
2.11e-67FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_80b66d9b90a70e2587ed48842c1fc718p@chr1:75599672..75599682, -
2.86e-62FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_4c1a9c3b1afb92a307db23216c23894ep1@ENST00000427892, p1@uc001dgp.1
2.86e-62FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_4c1a9c3b1afb92a307db23216c23894ep1@ENST00000427892, p1@uc001dgp.1
7.26e-62FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_b922ef059448ef381eea81dd250ab289p2@PAX9
7.26e-62FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_b922ef059448ef381eea81dd250ab289p2@PAX9
1.17e-59FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_ca56e14ab8a31406db12314adbf85377p@chr1:75599683..75599699, -
1.17e-59FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_ca56e14ab8a31406db12314adbf85377p@chr1:75599683..75599699, -
1.68e-58FFCP PHASE2:Mm9::chr1:52741574..52741579,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr1:52741574..52741579, +
1.68e-58FFCP PHASE2:Mm9::chr10:28755265..28755269,-#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr6:60435965..60435986,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr6:60435965..60435986, +
1.68e-58FFCP PHASE2:Mm9::chr7:51271323..51271366,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr7:51271323..51271366, +
1.68e-58FFCP PHASE1:Mm9::chr10:28755265..28755269,-#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr7:51271323..51271366,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr7:51271323..51271366, +
1.68e-58FFCP PHASE2:Mm9::chr6:60435965..60435986,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr6:60435965..60435986, +
1.68e-58FFCP PHASE1:Mm9::chr1:52741574..52741579,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr1:52741574..52741579, +
3.28e-58FFCP PHASE1:Mm9::chr10:28693770..28693774,-#_8bee0c0d830542a1f85aa9f12d25b99dp5@2310057J18Rik
3.28e-58FFCP PHASE2:Mm9::chr2:153840649..153840658,+#_8bee0c0d830542a1f85aa9f12d25b99dp8@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr6:132314147..132314153,-#_8bee0c0d830542a1f85aa9f12d25b99dp1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE2:Mm9::chr2:153837176..153837187,+#_8bee0c0d830542a1f85aa9f12d25b99dp@chr2:153837176..153837187, +
3.28e-58FFCP PHASE1:Mm9::chr2:153839410..153839423,+#_8bee0c0d830542a1f85aa9f12d25b99dp6@Bpifa2e
3.28e-58FFCP PHASE2:Mm9::chr6:132314147..132314153,-#_8bee0c0d830542a1f85aa9f12d25b99dp1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE2:Mm9::chr10:28693770..28693774,-#_8bee0c0d830542a1f85aa9f12d25b99dp5@2310057J18Rik
3.28e-58FFCP PHASE2:Mm9::chr2:153839410..153839423,+#_8bee0c0d830542a1f85aa9f12d25b99dp6@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr2:153840649..153840658,+#_8bee0c0d830542a1f85aa9f12d25b99dp8@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr2:153837176..153837187,+#_8bee0c0d830542a1f85aa9f12d25b99dp@chr2:153837176..153837187, +
3.3e-50FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_c2a068ebb43ab58bde77855be4cd2e55p2@LHX8
3.3e-50FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_c2a068ebb43ab58bde77855be4cd2e55p2@LHX8
1.66e-44FFCP PHASE2:Mm9::chr15:91736964..91737001,+#_41d3b82e0b80d56d888cc9450fd6bb04p@chr15:91736964..91737001, +
1.66e-44FFCP PHASE1:Mm9::chr10:28706137..28706150,-#_41d3b82e0b80d56d888cc9450fd6bb04p3@2310057J18Rik
1.66e-44FFCP PHASE1:Mm9::chr15:91736964..91737001,+#_41d3b82e0b80d56d888cc9450fd6bb04p@chr15:91736964..91737001, +
1.66e-44FFCP PHASE2:Mm9::chr10:28706137..28706150,-#_41d3b82e0b80d56d888cc9450fd6bb04p3@2310057J18Rik
2.07e-44FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e1586ed3b90b8cf88b9280e35c0e5a12p1@ENST00000555639
2.07e-44FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e1586ed3b90b8cf88b9280e35c0e5a12p1@ENST00000555639
2.75e-44FFCP PHASE2:Mm9::chr2:153835527..153835537,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp@chr2:153835527..153835537, +
2.75e-44FFCP PHASE1:Mm9::chr2:153833963..153833980,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp5@Bpifa2e
2.75e-44FFCP PHASE2:Mm9::chr2:153833963..153833980,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp5@Bpifa2e
2.75e-44FFCP PHASE1:Mm9::chr2:153835527..153835537,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp@chr2:153835527..153835537, +
4.52e-44FFCP PHASE2:Mm9::chr8:27934890..27934902,-#_6aea705790a53b011487476086a211ffp@chr8:27934890..27934902, -
4.52e-44FFCP PHASE1:Mm9::chr6:127527955..127527956,+#_6aea705790a53b011487476086a211ffp6@Efcab4b
4.52e-44FFCP PHASE1:Mm9::chr7:51268024..51268029,+#_6aea705790a53b011487476086a211ffp2@Egfbp2, p2@Klk1b26
4.52e-44FFCP PHASE1:Mm9::chr19:34039335..34039345,+#_6aea705790a53b011487476086a211ffp@chr19:34039335..34039345, +
4.52e-44FFCP PHASE2:Mm9::chr16:22918330..22918340,+#_6aea705790a53b011487476086a211ffp11@Fetub
4.52e-44FFCP PHASE2:Mm9::chr7:51209449..51209468,-#_6aea705790a53b011487476086a211ffp@chr7:51209449..51209468, -
4.52e-44FFCP PHASE2:Mm9::chr8:74245929..74245933,-#_6aea705790a53b011487476086a211ffp10@Fcho1
4.52e-44FFCP PHASE1:Mm9::chr13:112978961..112978966,+#_6aea705790a53b011487476086a211ffp@chr13:112978961..112978966, +
4.52e-44FFCP PHASE2:Mm9::chr16:42166864..42166867,+#_6aea705790a53b011487476086a211ffp@chr16:42166864..42166867, +
4.52e-44FFCP PHASE1:Mm9::chr1:16804378..16804385,+#_6aea705790a53b011487476086a211ffp@chr1:16804378..16804385, +
4.52e-44FFCP PHASE2:Mm9::chr3:129460833..129460843,+#_6aea705790a53b011487476086a211ffp@chr3:129460833..129460843, +
4.52e-44FFCP PHASE2:Mm9::chr4:149563294..149563299,-#_6aea705790a53b011487476086a211ffp@chr4:149563294..149563299, -
4.52e-44FFCP PHASE1:Mm9::chr7:51234512..51234517,+#_6aea705790a53b011487476086a211ffp@chr7:51234512..51234517, +
4.52e-44FFCP PHASE2:Mm9::chr19:34045246..34045251,+#_6aea705790a53b011487476086a211ffp@chr19:34045246..34045251, +
4.52e-44FFCP PHASE2:Mm9::chr6:43548213..43548219,+#_6aea705790a53b011487476086a211ffp@chr6:43548213..43548219, +
4.52e-44FFCP PHASE1:Mm9::chr9:61048186..61048188,+#_6aea705790a53b011487476086a211ffp@chr9:61048186..61048188, +
4.52e-44FFCP PHASE1:Mm9::chr7:51464968..51464982,+#_6aea705790a53b011487476086a211ffp@chr7:51464968..51464982, +
4.52e-44FFCP PHASE1:Mm9::chr2:129870352..129870357,+#_6aea705790a53b011487476086a211ffp@chr2:129870352..129870357, +
4.52e-44FFCP PHASE2:Mm9::chr2:129874079..129874084,-#_6aea705790a53b011487476086a211ffp@chr2:129874079..129874084, -
4.52e-44FFCP PHASE2:Mm9::chr9:43677486..43677488,+#_6aea705790a53b011487476086a211ffp@chr9:43677486..43677488, +
4.52e-44FFCP PHASE2:Mm9::chr7:51254288..51254301,-#_6aea705790a53b011487476086a211ffp@chr7:51254288..51254301, -
4.52e-44FFCP PHASE1:Mm9::chr8:27934890..27934902,-#_6aea705790a53b011487476086a211ffp@chr8:27934890..27934902, -
4.52e-44FFCP PHASE2:Mm9::chr17:10497339..10497341,+#_6aea705790a53b011487476086a211ffp@chr17:10497339..10497341, +
4.52e-44FFCP PHASE1:Mm9::chr7:149031277..149031282,+#_6aea705790a53b011487476086a211ffp@chr7:149031277..149031282, +
4.52e-44FFCP PHASE2:Mm9::chr19:34035639..34035644,+#_6aea705790a53b011487476086a211ffp4@Lipf
4.52e-44FFCP PHASE2:Mm9::chr15:103104236..103104239,+#_6aea705790a53b011487476086a211ffp@chr15:103104236..103104239, +
4.52e-44FFCP PHASE2:Mm9::chr17:40367824..40367826,-#_6aea705790a53b011487476086a211ffp@chr17:40367824..40367826, -
4.52e-44FFCP PHASE1:Mm9::chr7:51361022..51361029,-#_6aea705790a53b011487476086a211ffp@chr7:51361022..51361029, -
4.52e-44FFCP PHASE1:Mm9::chr17:40367824..40367826,-#_6aea705790a53b011487476086a211ffp@chr17:40367824..40367826, -
4.52e-44FFCP PHASE1:Mm9::chr2:19468928..19468929,-#_6aea705790a53b011487476086a211ffp@chr2:19468928..19468929, -
4.52e-44FFCP PHASE2:Mm9::chr17:57393370..57393379,+#_6aea705790a53b011487476086a211ffp@chr17:57393370..57393379, +
4.52e-44FFCP PHASE1:Mm9::chr16:42166864..42166867,+#_6aea705790a53b011487476086a211ffp@chr16:42166864..42166867, +
4.52e-44FFCP PHASE1:Mm9::chr11:118524835..118524836,-#_6aea705790a53b011487476086a211ffp@chr11:118524835..118524836, -
4.52e-44FFCP PHASE2:Mm9::chr7:51395959..51395980,+#_6aea705790a53b011487476086a211ffp@chr7:51395959..51395980, +
4.52e-44FFCP PHASE1:Mm9::chr6:131787463..131787506,+#_6aea705790a53b011487476086a211ffp@chr6:131787463..131787506, +
4.52e-44FFCP PHASE1:Mm9::chr7:51271475..51271500,-#_6aea705790a53b011487476086a211ffp@chr7:51271475..51271500, -
4.52e-44FFCP PHASE1:Mm9::chr3:129429207..129429210,-#_6aea705790a53b011487476086a211ffp@chr3:129429207..129429210, -
4.52e-44FFCP PHASE1:Mm9::chr19:34045308..34045320,+#_6aea705790a53b011487476086a211ffp@chr19:34045308..34045320, +
4.52e-44FFCP PHASE1:Mm9::chr17:40379328..40379333,-#_6aea705790a53b011487476086a211ffp2@Crisp3
4.52e-44FFCP PHASE2:Mm9::chr7:51311117..51311154,-#_6aea705790a53b011487476086a211ffp@chr7:51311117..51311154, -
4.52e-44FFCP PHASE1:Mm9::chr2:154026044..154026056,+#_6aea705790a53b011487476086a211ffp6@Bpifb1
4.52e-44FFCP PHASE2:Mm9::chr7:51464968..51464982,+#_6aea705790a53b011487476086a211ffp@chr7:51464968..51464982, +
4.52e-44FFCP PHASE2:Mm9::chr19:34050959..34050968,+#_6aea705790a53b011487476086a211ffp@chr19:34050959..34050968, +
4.52e-44FFCP PHASE1:Mm9::chr19:34035674..34035677,+#_6aea705790a53b011487476086a211ffp3@Lipf
4.52e-44FFCP PHASE1:Mm9::chr17:24092296..24092324,-#_6aea705790a53b011487476086a211ffp2@Sbpl
4.52e-44FFCP PHASE2:Mm9::chr7:51205984..51206017,+#_6aea705790a53b011487476086a211ffp1@Klk1b8
4.52e-44FFCP PHASE1:Mm9::chr12:95890336..95890340,-#_6aea705790a53b011487476086a211ffp@chr12:95890336..95890340, -
4.52e-44FFCP PHASE2:Mm9::chr13:64788940..64788944,+#_6aea705790a53b011487476086a211ffp@chr13:64788940..64788944, +
4.52e-44FFCP PHASE2:Mm9::chr1:135228845..135228847,-#_6aea705790a53b011487476086a211ffp@chr1:135228845..135228847, -
4.52e-44FFCP PHASE2:Mm9::chr3:129429207..129429210,-#_6aea705790a53b011487476086a211ffp@chr3:129429207..129429210, -
4.52e-44FFCP PHASE2:Mm9::chr17:59780196..59780198,-#_6aea705790a53b011487476086a211ffp@chr17:59780196..59780198, -
4.52e-44FFCP PHASE1:Mm9::chr7:51225424..51225450,+#_6aea705790a53b011487476086a211ffp@chr7:51225424..51225450, +
4.52e-44FFCP PHASE2:Mm9::chr19:34039335..34039345,+#_6aea705790a53b011487476086a211ffp@chr19:34039335..34039345, +
4.52e-44FFCP PHASE2:Mm9::chr17:24092296..24092324,-#_6aea705790a53b011487476086a211ffp2@Sbpl
4.52e-44FFCP PHASE2:Mm9::chr2:153834839..153834847,+#_6aea705790a53b011487476086a211ffp@chr2:153834839..153834847, +
4.52e-44FFCP PHASE1:Mm9::chr7:51395959..51395980,+#_6aea705790a53b011487476086a211ffp@chr7:51395959..51395980, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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