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{{UBERON
{{UBERON
|id=UBERON:0000365
|alt_id=UBERON:BTO_0001245-FMA_67695
|name=urothelium
|namespace=
|def="The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
|xref=BTO:0003906;;EMAPA:28089;;FMA:67695;;GAID:935;;http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png;;MESH:A.10.272.850;;ncithesaurus:Urothelium;;SCTID:57789003
|is_a=UBERON:0005910;;UBERON:0006554
|synonym="uroepithelium" EXACT [FMA:67695]
|comment=consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
|comment=consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
|alt_id=UBERON:BTO_0001245-FMA_67695
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000365
|is_a=UBERON:0005910 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|name=urothelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001008
|part_of=UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="uroepithelium" EXACT [FMA:67695]
|union_of=
|xref=BTO:0003906;;EMAPA:28089;;FMA:67695;;GAID:935;;http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png;;MESH:A.10.272.850;;ncithesaurus:Urothelium;;SCTID:57789003
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:urothelium
Namespace:FANTOM
Definition:"The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
Xrefs:
links:

BTO:0003906
EMAPA:28089
FMA:67695
GAID:935
[ Harnblase_Urothel.png Harnblase_Urothel.png]
MESH:A.10.272.850
ncithesaurus:Urothelium

SCTID:57789003
Synonyms: "uroepithelium" EXACT [FMA:67695]
Comments:consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
Alt_id: UBERON:BTO_0001245-FMA_67695

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005910(transitional epithelium),UBERON:0006554(urinary system structure)
part_of:UBERON:0001008(renal system)



Children

is a:UBERON:0004645 (urinary bladder urothelium)
part of:CL:0000731 (urothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000365 (urothelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.18e-79FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915edp9@BTBD16
3.18e-79FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915edp9@BTBD16
3.49e-79FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8p@chr21:39627877..39627884, +
3.49e-79FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8p@chr21:39627877..39627884, +
1.81e-70FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708p6@BTBD16
1.81e-70FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708p6@BTBD16
4.32e-64FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fdp16@PTHLH
4.32e-64FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fdp16@PTHLH
7.01e-64FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711p@chr5:61213179..61213189, -
7.01e-64FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711p@chr5:61213179..61213189, -
1.35e-59FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1p@chrX:102977640..102977644, -
1.35e-59FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1p@chrX:102977640..102977644, -
1.65e-59FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106fp4@IFNK
1.65e-59FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106fp4@IFNK
4.82e-58FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0p@chr1:40492754..40492762, +
4.82e-58FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0p@chr1:40492754..40492762, +
5.58e-58FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92ep@chr10:3954276..3954287, +
5.58e-58FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92ep@chr10:3954276..3954287, +
7.03e-54FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7p17@PTHLH
7.03e-54FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7p17@PTHLH
2.19e-53FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261p38@PTK2
2.19e-53FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261p38@PTK2
1.15e-51FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0p@chr5:61213127..61213133, -
1.15e-51FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0p@chr5:61213127..61213133, -
2.73e-51FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83p@chr21:44168074..44168079, +
2.73e-51FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83p@chr21:44168074..44168079, +
3.85e-51FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3ap@chr4:125341514..125341526, -
3.85e-51FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3ap@chr4:125341514..125341526, -
2.51e-49FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0ap@chr10:127763979..127763984, +
2.51e-49FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0ap@chr10:127763979..127763984, +
1.78e-45FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277p@chr11:127965855..127965866, +
1.78e-45FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277p@chr11:127965855..127965866, +
2.51e-45FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075p@chr19:15065111..15065171, -
2.51e-45FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075p@chr19:15065111..15065171, -
2.12e-43FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33cp3@BTBD16
2.12e-43FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33cp3@BTBD16
6.95e-43FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55p13@MTHFD1L
6.95e-43FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55p13@MTHFD1L
2.26e-42FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7p@chr7:2019948..2019961, -
2.26e-42FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7p@chr7:2019948..2019961, -
1.16e-40FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3dp30@AGAP3
1.16e-40FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3dp30@AGAP3
1.29e-40FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3p@chr2:31560793..31560814, -
1.29e-40FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3p@chr2:31560793..31560814, -
1.48e-40FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5ep2@ENST00000427341
1.48e-40FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5ep@chr15:101282110..101282113, +
1.48e-40FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5ep2@ENST00000427341
1.48e-40FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5ep@chr15:101282110..101282113, +
1.7e-40FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420p@chr13:20934450..20934456, +
1.7e-40FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420p@chr13:20934450..20934456, +
2.71e-40FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07p@chr14:85935018..85935023, -
2.71e-40FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07p@chr14:85935018..85935023, -
3.31e-40FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:113802868..113802878, -
3.31e-40FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:21564382..21564387, -
3.31e-40FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:113802868..113802878, -
3.31e-40FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:21564382..21564387, -
4.05e-40FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4p@chr19:43965689..43965700, -
4.05e-40FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4p@chr19:43965689..43965700, -
7.43e-40FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64p32@FRMD6
7.43e-40FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64p32@FRMD6
1.58e-39FFCP PHASE2:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cfp12@AMIGO2
1.58e-39FFCP PHASE1:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cfp12@AMIGO2
1.72e-38FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284p@chr21:45020721..45020728, -
1.72e-38FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284p@chr21:45020721..45020728, -
2.51e-38FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810p@chr8:143814087..143814102, -
2.51e-38FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810p@chr8:143814087..143814102, -
7.44e-37FFCP PHASE2:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3p@chr9:21564331..21564360, -
7.44e-37FFCP PHASE1:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3p@chr9:21564331..21564360, -
2.0e-36FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1ep@chr1:183192299..183192310, +
2.0e-36FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1ep@chr1:183192299..183192310, +
2.26e-36FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0ep@chr2:20402306..20402318, -
2.26e-36FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0ep@chr4:125341479..125341498, -
2.26e-36FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0ep@chr2:20402306..20402318, -
2.26e-36FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0ep@chr4:125341479..125341498, -
3.25e-36FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bdp1@IFNK
3.25e-36FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bdp1@IFNK
3.66e-36FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189p@chr1:99387558..99387571, -
3.66e-36FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189p6@GJB6
3.66e-36FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189p@chr1:99387558..99387571, -
3.66e-36FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189p6@GJB6
3.13e-35FFCP PHASE1:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072p@chr20:56273255..56273292, -
3.13e-35FFCP PHASE2:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072p@chr20:56273255..56273292, -
6.51e-35FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6p2@BTBD16
6.51e-35FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6p2@BTBD16
1.79e-33FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4p@chr1:183212642..183212654, +
1.79e-33FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4p@chr1:183212642..183212654, +
3.1e-33FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085p19@NDST1
3.1e-33FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085p19@NDST1
3.1e-33FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085p@chr6:44096519..44096530, -
3.1e-33FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085p@chr6:44096519..44096530, -
4.16e-33FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336fp@chr13:20762566..20762577, -
4.16e-33FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336fp@chr13:20762566..20762577, -
6.26e-33FFCP PHASE2:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634p6@WNT7A
6.26e-33FFCP PHASE1:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634p6@WNT7A
9.4e-33FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097p@chr5:146263947..146263959, -
9.4e-33FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097p@chr5:146263947..146263959, -
1.23e-32FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1acp25@KCNJ15
1.23e-32FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1acp25@KCNJ15
1.8e-32FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118dp@chr1:183204832..183204840, +
1.8e-32FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118dp@chr1:183204832..183204840, +

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