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|located_in=
|located_in=
|name=corpus striatum
|name=corpus striatum
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002420
|part_of=UBERON:0002420

Latest revision as of 17:08, 12 September 2014

Name:corpus striatum
Namespace:FANTOM
Definition:"The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum]
Xrefs:
links:

BTO:0001311
EFO:0000381
EMAPA:17549
EV:0100184
FMA:77616
GAID:667
[ 200px-Gray656.png 200px-Gray656.png]
MESH:A.08.186.211.730.885.105.487
ncithesaurus:Corpus_Striatum
SCTID:279318005

VHOG:0001175
Synonyms: "striate body" RELATED [BTO:0001311]
"striated body" RELATED [BTO:0001311]
Comments:The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum
Alt_id: UBERON:BTO_0001311-FMA_77616

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain)
develops_from:UBERON:0010082(future corpus striatum)
part_of:UBERON:0002420(basal ganglion)



Children

derives from:FF:0011288 (mouse corpus striatum- adult sample),FF:0011392 (mouse corpus striatum- neonate N00 sample)
part of:UBERON:0001873 (caudate nucleus),UBERON:0002435 (striatum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000369 (corpus striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_47f376a0978832f9395eb029678d0732p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_47f376a0978832f9395eb029678d0732p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_47f376a0978832f9395eb029678d0732p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_47f376a0978832f9395eb029678d0732p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_47f376a0978832f9395eb029678d0732p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_47f376a0978832f9395eb029678d0732p@chr14:78638610..78638621, +
2.57e-195FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_47f376a0978832f9395eb029678d0732p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_47f376a0978832f9395eb029678d0732p@chr13:112726433..112726446, +
2.57e-195FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_47f376a0978832f9395eb029678d0732p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_47f376a0978832f9395eb029678d0732p@chr14:78638610..78638621, +
2.57e-195FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_47f376a0978832f9395eb029678d0732p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_47f376a0978832f9395eb029678d0732p@chr13:112726433..112726446, +
6.72e-157FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p2@BC051739
6.72e-157FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr10:97261874..97261887, -
6.72e-157FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr15:35546024..35546035, -
6.72e-157FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr17:19390211..19390223, +
6.72e-157FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p2@BC051739
6.72e-157FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr17:19390211..19390223, +
6.72e-157FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr10:97261874..97261887, -
6.72e-157FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr2:3853961..3853984, +
6.72e-157FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr15:35546024..35546035, -
1.5e-156FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_a11a9965d44c69c72473f77b10d520dep23@KCNAB1
1.5e-156FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_a11a9965d44c69c72473f77b10d520dep23@KCNAB1
3.35e-156FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_defc547151d1f56fa5192373d93aefedp6@SYNDIG1L
3.35e-156FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_defc547151d1f56fa5192373d93aefedp6@SYNDIG1L
6.94e-147FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr11:47617035..47617045, -
6.94e-147FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p11@SCN8A
6.94e-147FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p11@SCN8A
6.94e-147FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr3:63542313..63542321, +
6.94e-147FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr17:7271778..7271784, +
6.94e-147FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr3:63542313..63542321, +
6.94e-147FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p5@ENST00000514240
6.94e-147FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p5@ENST00000514240
6.94e-147FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr11:47617035..47617045, -
6.94e-147FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p22@PRLR
6.94e-147FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr17:7271778..7271784, +
2.79e-131FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr11:26497871..26497889, +
2.79e-131FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr2:234227370..234227385, +
2.79e-131FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr11:26497871..26497889, +
2.79e-131FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr2:234227370..234227385, +
2.79e-131FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep10@SYNPR
2.79e-131FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep10@SYNPR
3.91e-131FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_c25e680d933a387a15f5d6bf28912821p9@DOCK4
3.91e-131FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_c25e680d933a387a15f5d6bf28912821p1@ENST00000421878
3.91e-131FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_c25e680d933a387a15f5d6bf28912821p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_c25e680d933a387a15f5d6bf28912821p1@ENST00000421878
5.46e-131FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_d12eba93ebfb70e08334697abf61b12ep8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_d12eba93ebfb70e08334697abf61b12ep8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_d12eba93ebfb70e08334697abf61b12ep1@LINC00523
5.46e-131FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_d12eba93ebfb70e08334697abf61b12ep1@LINC00523
5.46e-131FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_d12eba93ebfb70e08334697abf61b12ep@chr2:212989626..212989648, -
5.46e-131FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_d12eba93ebfb70e08334697abf61b12ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_d12eba93ebfb70e08334697abf61b12ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_d12eba93ebfb70e08334697abf61b12ep@chr2:212989626..212989648, -
1.07e-130FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_4e00f84e6e28e8799a4629e58719b11fp14@ADORA2A
1.07e-130FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_4e00f84e6e28e8799a4629e58719b11fp8@ANO3
1.07e-130FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_4e00f84e6e28e8799a4629e58719b11fp8@ANO3
1.07e-130FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_4e00f84e6e28e8799a4629e58719b11fp14@ADORA2A
4.07e-130FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_1ff2c933ae3bf60d221685ef77ed3ce7p@chr16:84027018..84027029, +
4.07e-130FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_1ff2c933ae3bf60d221685ef77ed3ce7p@chr16:84027018..84027029, +
5.62e-113FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_2d167f25acd589c475955d91795e2c6ep3@GPR149
5.62e-113FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_2d167f25acd589c475955d91795e2c6ep3@GPR149
5.62e-113FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_2d167f25acd589c475955d91795e2c6ep@chr13:98995904..98995913, +
5.62e-113FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_2d167f25acd589c475955d91795e2c6ep@chr13:98995904..98995913, +
7.5e-113FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_c63482ec1bef320e45dfabf1fac497c4p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_c63482ec1bef320e45dfabf1fac497c4p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_c63482ec1bef320e45dfabf1fac497c4p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_c63482ec1bef320e45dfabf1fac497c4p@chr6:12890045..12890049, +
7.5e-113FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_c63482ec1bef320e45dfabf1fac497c4p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_c63482ec1bef320e45dfabf1fac497c4p@chr6:12890045..12890049, +
1.0e-112FFCP PHASE1:Hg19::chr2:242171468..242171498,-#_872352729f6ab857663ef16c7c9d50bap@chr2:242171468..242171498, -
1.0e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_872352729f6ab857663ef16c7c9d50bap@chr2:7112752..7112770, +

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