Personal tools

UBERON:0000463: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000463 |name=portion of organism substance |namespace= |def="Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by an...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000463
|alt_id=UBERON:CARO_0000004-FBbt_00007019
|name=portion of organism substance
|namespace=
|def="Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
|xref=AAO:0010839;;AEO:0000004;;BILA:0000004;;CARO:0000004;;EHDAA2:0003004;;FBbt:00007019;;FMA:9669;;galen:BodySubstance;;HAO:0000004;;MA:0002450;;ncithesaurus:Body_Fluid_or_Substance;;SPD:0000008;;TGMA:0001824;;XAO:0004001;;ZFA:0001487
|is_a=UBERON:0000465
|synonym="body fluid or substance" EXACT [MA:0002450];;"body substance" EXACT [FMA:9669];;"organism substance" EXACT [];;"portion of body substance" EXACT [FMA:9669]
|comment=
|comment=
|alt_id=UBERON:CARO_0000004-FBbt_00007019
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
|subset=upper_level
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000463
|is_a=UBERON:0000465
|is_obsolete=
|located_in=
|located_in=
|name=organism substance
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000468
|part_of=UBERON:0000468
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=upper_level
|synonym="body fluid or substance" EXACT [MA:0002450];;"body substance" EXACT [FMA:9669];;"organism substance" EXACT [];;"portion of body substance" EXACT [FMA:9669]
|union_of=
|xref=AAO:0010839;;AEO:0000004;;BILA:0000004;;CARO:0000004;;EHDAA2:0003004;;FBbt:00007019;;FMA:9669;;galen:BodySubstance;;HAO:0000004;;MA:0002450;;ncithesaurus:Body_Fluid_or_Substance;;SPD:0000008;;TAO:0001487;;TGMA:0001824;;XAO:0004001;;ZFA:0001487
}}
}}

Latest revision as of 17:09, 12 September 2014

Name:organism substance
Namespace:FANTOM
Definition:"Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
Xrefs:
links:

AAO:0010839
AEO:0000004
BILA:0000004
CARO:0000004
EHDAA2:0003004
FBbt:00007019
FMA:9669
galen:BodySubstance
HAO:0000004
MA:0002450
ncithesaurus:Body_Fluid_or_Substance
SPD:0000008
TAO:0001487
TGMA:0001824
XAO:0004001

ZFA:0001487
Synonyms: "body fluid or substance" EXACT [MA:0002450]
"body substance" EXACT [FMA:9669]
"organism substance" EXACT []
"portion of body substance" EXACT [FMA:9669]
Alt_id: UBERON:CARO_0000004-FBbt_00007019
Subset: upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000465(material anatomical entity)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0006312 (ocular refractive media),UBERON:0006314 (bodily fluid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000463 (organism substance), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.41e-121FFCP PHASE2:Hg19::chr1:205236716..205236728,+#_1846f6d890cebe3451ed9a176f00532dp13@TMCC2
2.41e-121FFCP PHASE1:Hg19::chr1:205236716..205236728,+#_1846f6d890cebe3451ed9a176f00532dp13@TMCC2
2.31e-117FFCP PHASE1:Hg19::chr4:74847473..74847482,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr4:74847473..74847482, -
2.31e-117FFCP PHASE2:Hg19::chr14:75444134..75444136,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:75444134..75444136, -
2.31e-117FFCP PHASE2:Hg19::chr20:54933899..54933911,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep7@FAM210B
2.31e-117FFCP PHASE2:Hg19::chr9:38090057..38090092,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr9:38090057..38090092, +
2.31e-117FFCP PHASE2:Hg19::chr11:125491251..125491253,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr11:125491251..125491253, -
2.31e-117FFCP PHASE1:Hg19::chr9:38090057..38090092,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr9:38090057..38090092, +
2.31e-117FFCP PHASE1:Hg19::chr16:31539534..31539538,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep4@AHSP
2.31e-117FFCP PHASE2:Hg19::chr2:192318775..192318777,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr2:192318775..192318777, -
2.31e-117FFCP PHASE2:Hg19::chr2:127434629..127434640,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr2:127434629..127434640, +
2.31e-117FFCP PHASE1:Hg19::chr11:118962235..118962238,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep5@HMBS
2.31e-117FFCP PHASE1:Hg19::chr12:111678218..111678221,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr12:111678218..111678221, +
2.31e-117FFCP PHASE1:Hg19::chr11:125491251..125491253,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr11:125491251..125491253, -
2.31e-117FFCP PHASE1:Hg19::chr16:29810067..29810071,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr16:29810067..29810071, +
2.31e-117FFCP PHASE1:Hg19::chr7:44973137..44973140,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr7:44973137..44973140, -
2.31e-117FFCP PHASE1:Hg19::chr14:81627978..81627994,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:81627978..81627994, -
2.31e-117FFCP PHASE1:Hg19::chr14:75444134..75444136,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:75444134..75444136, -
2.31e-117FFCP PHASE2:Hg19::chr11:118962235..118962238,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep5@HMBS
2.31e-117FFCP PHASE1:Hg19::chr20:54933899..54933911,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep7@FAM210B
2.31e-117FFCP PHASE2:Hg19::chr12:111678218..111678221,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr12:111678218..111678221, +
2.31e-117FFCP PHASE1:Hg19::chr14:65501285..65501318,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:65501285..65501318, +
2.31e-117FFCP PHASE2:Hg19::chr14:65501285..65501318,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:65501285..65501318, +
2.31e-117FFCP PHASE2:Hg19::chr16:31539534..31539538,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep4@AHSP
2.31e-117FFCP PHASE2:Hg19::chr7:44973137..44973140,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr7:44973137..44973140, -
2.31e-117FFCP PHASE2:Hg19::chr11:61044581..61044587,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr11:61044581..61044587, -
2.31e-117FFCP PHASE1:Hg19::chr11:61044581..61044587,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr11:61044581..61044587, -
2.31e-117FFCP PHASE2:Hg19::chr4:74847473..74847482,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr4:74847473..74847482, -
2.31e-117FFCP PHASE1:Hg19::chr2:192318775..192318777,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr2:192318775..192318777, -
2.31e-117FFCP PHASE1:Hg19::chr12:829787..829796,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr12:829787..829796, -
2.31e-117FFCP PHASE2:Hg19::chr17:42336860..42336865,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr17:42336860..42336865, -
2.31e-117FFCP PHASE2:Hg19::chr12:829787..829796,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr12:829787..829796, -
2.31e-117FFCP PHASE2:Hg19::chr16:29810067..29810071,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr16:29810067..29810071, +
2.31e-117FFCP PHASE1:Hg19::chr2:127434629..127434640,+#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr2:127434629..127434640, +
2.31e-117FFCP PHASE1:Hg19::chr17:42336860..42336865,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr17:42336860..42336865, -
2.31e-117FFCP PHASE2:Hg19::chr14:81627978..81627994,-#_94cabe1dd8c3ff7cfc83050e0f45b17ep@chr14:81627978..81627994, -
8.26e-109FFCP PHASE2:Hg19::chr6:148938884..148938891,+#_77e0d2ebf7522106b46d6669e875bbf2p@chr6:148938884..148938891, +
8.26e-109FFCP PHASE1:Hg19::chr6:148938884..148938891,+#_77e0d2ebf7522106b46d6669e875bbf2p@chr6:148938884..148938891, +
8.26e-109FFCP PHASE1:Hg19::chr2:192701558..192701565,-#_77e0d2ebf7522106b46d6669e875bbf2p@chr2:192701558..192701565, -
8.26e-109FFCP PHASE2:Hg19::chr2:192701558..192701565,-#_77e0d2ebf7522106b46d6669e875bbf2p@chr2:192701558..192701565, -
8.23e-106FFCP PHASE2:Hg19::chr5:95843224..95843228,-#_f3a243b10696115414dc4d9c05a5e275p@chr5:95843224..95843228, -
8.23e-106FFCP PHASE1:Hg19::chr7:30950369..30950387,+#_f3a243b10696115414dc4d9c05a5e275p@chr7:30950369..30950387, +
8.23e-106FFCP PHASE1:Hg19::chr6:156352553..156352562,-#_f3a243b10696115414dc4d9c05a5e275p@chr6:156352553..156352562, -
8.23e-106FFCP PHASE2:Hg19::chr12:30576643..30576644,-#_f3a243b10696115414dc4d9c05a5e275p@chr12:30576643..30576644, -
8.23e-106FFCP PHASE1:Hg19::chr5:95843224..95843228,-#_f3a243b10696115414dc4d9c05a5e275p@chr5:95843224..95843228, -
8.23e-106FFCP PHASE2:Hg19::chr6:156352553..156352562,-#_f3a243b10696115414dc4d9c05a5e275p@chr6:156352553..156352562, -
8.23e-106FFCP PHASE2:Hg19::chr11:76367785..76367794,-#_f3a243b10696115414dc4d9c05a5e275p5@ENST00000531511
8.23e-106FFCP PHASE1:Hg19::chr11:76367785..76367794,-#_f3a243b10696115414dc4d9c05a5e275p5@ENST00000531511
8.23e-106FFCP PHASE1:Hg19::chr3:142671745..142671768,-#_f3a243b10696115414dc4d9c05a5e275p@chr3:142671745..142671768, -
8.23e-106FFCP PHASE1:Hg19::chr17:42335778..42335781,-#_f3a243b10696115414dc4d9c05a5e275p4@SLC4A1
8.23e-106FFCP PHASE2:Hg19::chr1:154912672..154912683,+#_f3a243b10696115414dc4d9c05a5e275p@chr1:154912672..154912683, +
8.23e-106FFCP PHASE2:Hg19::chr11:76367970..76367987,-#_f3a243b10696115414dc4d9c05a5e275p2@ENST00000531511
8.23e-106FFCP PHASE2:Hg19::chr11:5246742..5246755,+#_f3a243b10696115414dc4d9c05a5e275p7@CU675538
8.23e-106FFCP PHASE1:Hg19::chr10:46076393..46076404,-#_f3a243b10696115414dc4d9c05a5e275p@chr10:46076393..46076404, -
8.23e-106FFCP PHASE1:Hg19::chr10:8724326..8724327,-#_f3a243b10696115414dc4d9c05a5e275p@chr10:8724326..8724327, -
8.23e-106FFCP PHASE1:Hg19::chr2:23680232..23680238,-#_f3a243b10696115414dc4d9c05a5e275p@chr2:23680232..23680238, -
8.23e-106FFCP PHASE2:Hg19::chr2:127434578..127434589,+#_f3a243b10696115414dc4d9c05a5e275p@chr2:127434578..127434589, +
8.23e-106FFCP PHASE1:Hg19::chr1:154912672..154912683,+#_f3a243b10696115414dc4d9c05a5e275p@chr1:154912672..154912683, +
8.23e-106FFCP PHASE2:Hg19::chr8:21861540..21861544,+#_f3a243b10696115414dc4d9c05a5e275p@chr8:21861540..21861544, +
8.23e-106FFCP PHASE2:Hg19::chr10:8724326..8724327,-#_f3a243b10696115414dc4d9c05a5e275p@chr10:8724326..8724327, -
8.23e-106FFCP PHASE1:Hg19::chr11:5246715..5246726,+#_f3a243b10696115414dc4d9c05a5e275p8@CU675538
8.23e-106FFCP PHASE2:Hg19::chr3:142671745..142671768,-#_f3a243b10696115414dc4d9c05a5e275p@chr3:142671745..142671768, -
8.23e-106FFCP PHASE1:Hg19::chr11:76367970..76367987,-#_f3a243b10696115414dc4d9c05a5e275p2@ENST00000531511
8.23e-106FFCP PHASE2:Hg19::chr12:938316..938322,+#_f3a243b10696115414dc4d9c05a5e275p@chr12:938316..938322, +
8.23e-106FFCP PHASE2:Hg19::chr10:46076393..46076404,-#_f3a243b10696115414dc4d9c05a5e275p@chr10:46076393..46076404, -
8.23e-106FFCP PHASE2:Hg19::chr1:161137023..161137027,+#_f3a243b10696115414dc4d9c05a5e275p@chr1:161137023..161137027, +
8.23e-106FFCP PHASE2:Hg19::chr11:5246715..5246726,+#_f3a243b10696115414dc4d9c05a5e275p8@CU675538
8.23e-106FFCP PHASE2:Hg19::chr17:42337173..42337177,-#_f3a243b10696115414dc4d9c05a5e275p@chr17:42337173..42337177, -
8.23e-106FFCP PHASE1:Hg19::chr11:5246742..5246755,+#_f3a243b10696115414dc4d9c05a5e275p7@CU675538
8.23e-106FFCP PHASE1:Hg19::chr8:21861540..21861544,+#_f3a243b10696115414dc4d9c05a5e275p@chr8:21861540..21861544, +
8.23e-106FFCP PHASE1:Hg19::chr2:127434578..127434589,+#_f3a243b10696115414dc4d9c05a5e275p@chr2:127434578..127434589, +
8.23e-106FFCP PHASE1:Hg19::chr1:161137023..161137027,+#_f3a243b10696115414dc4d9c05a5e275p@chr1:161137023..161137027, +
8.23e-106FFCP PHASE1:Hg19::chr12:30576643..30576644,-#_f3a243b10696115414dc4d9c05a5e275p@chr12:30576643..30576644, -
8.23e-106FFCP PHASE2:Hg19::chr17:42335778..42335781,-#_f3a243b10696115414dc4d9c05a5e275p4@SLC4A1
8.23e-106FFCP PHASE2:Hg19::chr2:23680232..23680238,-#_f3a243b10696115414dc4d9c05a5e275p@chr2:23680232..23680238, -
8.23e-106FFCP PHASE1:Hg19::chr12:938316..938322,+#_f3a243b10696115414dc4d9c05a5e275p@chr12:938316..938322, +
8.23e-106FFCP PHASE1:Hg19::chr17:42337173..42337177,-#_f3a243b10696115414dc4d9c05a5e275p@chr17:42337173..42337177, -
8.23e-106FFCP PHASE2:Hg19::chr7:30950369..30950387,+#_f3a243b10696115414dc4d9c05a5e275p@chr7:30950369..30950387, +
9.3e-106FFCP PHASE2:Hg19::chr7:18520409..18520411,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr7:18520409..18520411, -
9.3e-106FFCP PHASE2:Hg19::chr3:39430391..39430424,+#_5e9aafc55115bc1f5a2d557f61ea9323p@chr3:39430391..39430424, +
9.3e-106FFCP PHASE2:Hg19::chr11:235547..235556,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr11:235547..235556, -
9.3e-106FFCP PHASE1:Hg19::chr3:24179318..24179327,+#_5e9aafc55115bc1f5a2d557f61ea9323p@chr3:24179318..24179327, +
9.3e-106FFCP PHASE2:Hg19::chr3:24179318..24179327,+#_5e9aafc55115bc1f5a2d557f61ea9323p@chr3:24179318..24179327, +
9.3e-106FFCP PHASE2:Hg19::chr19:17146840..17146843,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr19:17146840..17146843, -
9.3e-106FFCP PHASE1:Hg19::chr11:235547..235556,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr11:235547..235556, -
9.3e-106FFCP PHASE1:Hg19::chr7:18520409..18520411,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr7:18520409..18520411, -
9.3e-106FFCP PHASE1:Hg19::chr3:39430391..39430424,+#_5e9aafc55115bc1f5a2d557f61ea9323p@chr3:39430391..39430424, +
9.3e-106FFCP PHASE1:Hg19::chr19:17146840..17146843,-#_5e9aafc55115bc1f5a2d557f61ea9323p@chr19:17146840..17146843, -
1.05e-105FFCP PHASE1:Hg19::chr3:151067996..151068011,-#_4659414bbc476134f11c2d6b73b1cb40p@chr3:151067996..151068011, -
1.05e-105FFCP PHASE1:Hg19::chr13:59545633..59545635,-#_4659414bbc476134f11c2d6b73b1cb40p@chr13:59545633..59545635, -
1.05e-105FFCP PHASE2:Hg19::chr3:151067996..151068011,-#_4659414bbc476134f11c2d6b73b1cb40p@chr3:151067996..151068011, -
1.05e-105FFCP PHASE2:Hg19::chr13:59545633..59545635,-#_4659414bbc476134f11c2d6b73b1cb40p@chr13:59545633..59545635, -
1.34e-105FFCP PHASE2:Hg19::chr4:99783676..99783681,-#_0cba99c98ed1b7ca84d19cbeb20a97bcp@chr4:99783676..99783681, -
1.34e-105FFCP PHASE1:Hg19::chr4:99783676..99783681,-#_0cba99c98ed1b7ca84d19cbeb20a97bcp@chr4:99783676..99783681, -
1.87e-104FFCP PHASE1:Hg19::chr4:52905409..52905410,-#_775a757402c8f8a8dd603bc89719b5e3p@chr4:52905409..52905410, -
1.87e-104FFCP PHASE1:Hg19::chr8:21927844..21927847,+#_775a757402c8f8a8dd603bc89719b5e3p@chr8:21927844..21927847, +
1.87e-104FFCP PHASE2:Hg19::chr1:206320318..206320322,+#_775a757402c8f8a8dd603bc89719b5e3p8@CTSE
1.87e-104FFCP PHASE2:Hg19::chr4:171855577..171855579,-#_775a757402c8f8a8dd603bc89719b5e3p@chr4:171855577..171855579, -
1.87e-104FFCP PHASE1:Hg19::chr1:206320318..206320322,+#_775a757402c8f8a8dd603bc89719b5e3p8@CTSE
1.87e-104FFCP PHASE1:Hg19::chr1:17803417..17803419,-#_775a757402c8f8a8dd603bc89719b5e3p@chr1:17803417..17803419, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000463&oldid=3277109"