UBERON:0000473: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0002117;;UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598 | ||
|anatomical_img_id=FMA:45664 | |||
| | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="gonad of a male animal, produces and releases sperm." [Wikipedia:Testis] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0009117 | ||
|disjoint_from=UBERON:0000992;;UBERON:0009117 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000473 | |||
|is_a=UBERON:0000991 ;;UBERON:0003135 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=testis | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000079 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string;;UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string;;UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string | ||
| | |subset=organ_slim;;uberon_slim;;vertebrate_core | ||
| | |synonym="genitalia of male organism gonad" EXACT [OBOL:automatic];;"genitalia of male organism gonada" EXACT [OBOL:automatic];;"gonad of genitalia of male organism" EXACT [OBOL:automatic];;"gonad of male genitalia" EXACT [OBOL:automatic];;"gonad of male genitals" EXACT [OBOL:automatic];;"gonad of male organism genitalia" EXACT [OBOL:automatic];;"gonad of male organism reproductive system" EXACT [OBOL:automatic];;"gonad of male reproductive system" EXACT [OBOL:automatic];;"gonad of reproductive system of male organism" EXACT [OBOL:automatic];;"gonada of genitalia of male organism" EXACT [OBOL:automatic];;"gonada of male genitalia" EXACT [OBOL:automatic];;"gonada of male genitals" EXACT [OBOL:automatic];;"gonada of male organism genitalia" EXACT [OBOL:automatic];;"gonada of male organism reproductive system" EXACT [OBOL:automatic];;"gonada of male reproductive system" EXACT [OBOL:automatic];;"gonada of reproductive system of male organism" EXACT [OBOL:automatic];;"male genitalia gonad" EXACT [OBOL:automatic];;"male genitalia gonada" EXACT [OBOL:automatic];;"male genitals gonad" EXACT [OBOL:automatic];;"male gonad" EXACT [OBOL:automatic];;"male organism genitalia gonad" EXACT [OBOL:automatic];;"male organism genitalia gonada" EXACT [OBOL:automatic];;"male organism reproductive system gonad" EXACT [OBOL:automatic];;"male organism reproductive system gonada" EXACT [OBOL:automatic];;"male reproductive system gonad" EXACT [OBOL:automatic];;"male reproductive system gonada" EXACT [OBOL:automatic];;"orchis" RELATED [BTO:0001363];;"reproductive system of male organism gonad" EXACT [OBOL:automatic];;"reproductive system of male organism gonada" EXACT [OBOL:automatic];;"testes" RELATED PLURAL [];;"testicle" EXACT [FMA:7210];;"testiculus" RELATED [BTO:0001363] | ||
|union_of= | |||
|xref=AAO:0000606;;BILA:0000124;;BTO:0001363;;EFO:0000984;;EHDAA2:0002007;;EHDAA:8146;;EMAPA:17972;;EV:0100102;;FBbt:00004928;;FMA:7210;;GAID:396;;galen:Testis;;HAO:0001007;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png;;MA:0000411;;MAT:0000132;;MESH:A.05.360.444.849;;MIAA:0000132;;ncithesaurus:Testis;;OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA;;SCTID:181431007;;TAO:0000598;;VHOG:0000252;;WBbt:0006794;;XAO:0000157;;ZFA:0000598 | |||
}} | }} | ||
Latest revision as of 17:09, 12 September 2014
| Name: | testis | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis] | |
| Xrefs: |
| |
| Synonyms: |
"genitalia of male organism gonad" EXACT [OBOL:automatic] "genitalia of male organism gonada" EXACT [OBOL:automatic] "gonad of genitalia of male organism" EXACT [OBOL:automatic] "gonad of male genitalia" EXACT [OBOL:automatic] "gonad of male genitals" EXACT [OBOL:automatic] "gonad of male organism genitalia" EXACT [OBOL:automatic] "gonad of male organism reproductive system" EXACT [OBOL:automatic] "gonad of male reproductive system" EXACT [OBOL:automatic] "gonad of reproductive system of male organism" EXACT [OBOL:automatic] "gonada of genitalia of male organism" EXACT [OBOL:automatic] "gonada of male genitalia" EXACT [OBOL:automatic] "gonada of male genitals" EXACT [OBOL:automatic] "gonada of male organism genitalia" EXACT [OBOL:automatic] "gonada of male organism reproductive system" EXACT [OBOL:automatic] "gonada of male reproductive system" EXACT [OBOL:automatic] "gonada of reproductive system of male organism" EXACT [OBOL:automatic] "male genitalia gonad" EXACT [OBOL:automatic] "male genitalia gonada" EXACT [OBOL:automatic] "male genitals gonad" EXACT [OBOL:automatic] "male gonad" EXACT [OBOL:automatic] "male organism genitalia gonad" EXACT [OBOL:automatic] "male organism genitalia gonada" EXACT [OBOL:automatic] "male organism reproductive system gonad" EXACT [OBOL:automatic] "male organism reproductive system gonada" EXACT [OBOL:automatic] "male reproductive system gonad" EXACT [OBOL:automatic] "male reproductive system gonada" EXACT [OBOL:automatic] "orchis" RELATED [BTO:0001363] "reproductive system of male organism gonad" EXACT [OBOL:automatic] "reproductive system of male organism gonada" EXACT [OBOL:automatic] "testes" RELATED PLURAL [] "testicle" EXACT [FMA:7210] "testiculus" RELATED [BTO:0001363] | |
| Alt_id: |
UBERON:0002117 UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598 | |
| Subset: |
organ_slim uberon_slim vertebrate_core |
200px-Gray1144.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000991(gonad),UBERON:0003135(male reproductive organ) |
|---|---|
| disjoint_from: | UBERON:0000992(female gonad),UBERON:0009117(indifferent gonad) |
| develops_from: | UBERON:0009117(indifferent gonad) |
| part_of: | UBERON:0000079(male reproductive system) |
Children
| is a: | FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15) |
|---|---|
| derives from: | FF:0010026 (human testis - adult sample),FF:0011332 (mouse testis- embryo E13 sample),FF:0011352 (mouse testis- embryo E15 sample),FF:0011364 (mouse testis- embryo E16 sample),FF:0011372 (mouse testis- embryo E17 sample),FF:0011377 (mouse testis- embryo E18 sample),FF:0011383 (mouse testis- adult sample),FF:0011412 (mouse testis- neonate N07 sample),FF:0011422 (mouse testis- neonate N10 sample),FF:0011433 (mouse testis- neonate N20 sample),FF:0011495 (mouse testis- neonate N30 sample),FF:0011509 (mouse testis- neonate N00 sample),FF:0101560 (testicular cancer cell line sample) |
| part of: | UBERON:0000998 (seminal vesicle),UBERON:0001343 (seminiferous tubule of testis),UBERON:0004910 (epithelium of male gonad),UBERON:0005297 (testis sex cord) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
- 1300-22B7 (testis, neonate N00)
... further results Mouse (Mus musculus)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
- 1300-22B7 (testis, neonate N00)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000473 (testis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
