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|located_in=
|located_in=
|name=pons
|name=pons
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001895;;UBERON:0002298
|part_of=UBERON:0001895;;UBERON:0002298

Latest revision as of 17:13, 12 September 2014

Name:pons
Namespace:FANTOM
Definition:"Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]." [FMA:67943, Wikipedia:Pons]
Xrefs:
links:

ABA:P
BM:Pons
BTO:0001101
EFO:0001394
EHDAA2:0004394
EMAPA:17563
EV:0100253
FMA:67943
GAID:578
[ Gray768.png Gray768.png]
[ 200px-Gray768.png 200px-Gray768.png]
MA:0000204
MAT:0000115
MESH:A.08.186.211.132.810.428.600
MIAA:0000115
ncithesaurus:Pons_Varolii
NIF_GrossAnatomy:birnlex_733
SCTID:279103004

VHOG:0001176
Synonyms: "pons of Varolius" EXACT []
"pons Varolii" EXACT [ncithesaurus:Pons_Varolii]
Comments:The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved
Alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002680(regional part of metencephalon)
part_of:UBERON:0001895(metencephalon),UBERON:0002298(brainstem)



Children

derives from:FF:0010033 (human pons - adult sample)
part of:UBERON:0003023 (pontine tegmentum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000988 (pons), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr2:237146889..237146895,-#_86580236641d115091767dbd4ff57d70p@chr2:237146889..237146895, -
8.98e-131FFCP PHASE2:Hg19::chr2:218873244..218873256,-#_86580236641d115091767dbd4ff57d70p@chr2:218873244..218873256, -
8.98e-131FFCP PHASE2:Hg19::chr2:237146889..237146895,-#_86580236641d115091767dbd4ff57d70p@chr2:237146889..237146895, -
8.98e-131FFCP PHASE1:Hg19::chr6:56820018..56820029,+#_86580236641d115091767dbd4ff57d70p16@BEND6
8.98e-131FFCP PHASE1:Hg19::chr2:218873244..218873256,-#_86580236641d115091767dbd4ff57d70p@chr2:218873244..218873256, -
8.98e-131FFCP PHASE2:Hg19::chr6:56820018..56820029,+#_86580236641d115091767dbd4ff57d70p16@BEND6
6.24e-88FFCP PHASE1:Hg19::chr7:31569075..31569083,+#_d2cffdd81d5f9d0d369f6ad076e1c752p3@CCDC129
6.24e-88FFCP PHASE2:Hg19::chr7:31569075..31569083,+#_d2cffdd81d5f9d0d369f6ad076e1c752p3@CCDC129
1.28e-84FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_48ede2513dcffa91a6d0279694cfd881p@chr4:117675601..117675614, +
1.28e-84FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_48ede2513dcffa91a6d0279694cfd881p@chr4:117675601..117675614, +
2.27e-84FFCP PHASE2:Hg19::chr11:30751827..30751838,+#_005711ed5758f0efc276687957aaca5ap@chr11:30751827..30751838, +
2.27e-84FFCP PHASE1:Hg19::chr11:30751827..30751838,+#_005711ed5758f0efc276687957aaca5ap@chr11:30751827..30751838, +
6.07e-75FFCP PHASE1:Hg19::chr18:5577640..5577652,-#_b00266e4e59a352a0a2054f5f2d6a322p14@EPB41L3
6.07e-75FFCP PHASE2:Hg19::chr18:5577640..5577652,-#_b00266e4e59a352a0a2054f5f2d6a322p14@EPB41L3
1.66e-74FFCP PHASE1:Hg19::chr3:183979132..183979143,-#_ea03f42e9cd6eaff5b0359cd274fcb64p8@CAMK2N2
1.66e-74FFCP PHASE2:Hg19::chr3:183979132..183979143,-#_ea03f42e9cd6eaff5b0359cd274fcb64p8@CAMK2N2
7.51e-74FFCP PHASE1:Hg19::chr6:55039307..55039326,+#_a9a9ea64615d4e898b7214e29c0c04edp1@HCRTR2
7.51e-74FFCP PHASE2:Hg19::chr6:55039307..55039326,+#_a9a9ea64615d4e898b7214e29c0c04edp1@HCRTR2
2.39e-66FFCP PHASE1:Hg19::chr11:3224982..3224985,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr11:3224982..3224985, -
2.39e-66FFCP PHASE1:Hg19::chr16:67237164..67237171,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr16:67237164..67237171, +
2.39e-66FFCP PHASE1:Hg19::chr9:135458306..135458314,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p9@BARHL1
2.39e-66FFCP PHASE1:Hg19::chr4:186661365..186661384,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p46@SORBS2
2.39e-66FFCP PHASE2:Hg19::chr6:71665623..71665630,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p13@B3GAT2
2.39e-66FFCP PHASE2:Hg19::chr9:135458306..135458314,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p9@BARHL1
2.39e-66FFCP PHASE1:Hg19::chr2:17381145..17381164,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr2:17381145..17381164, -
2.39e-66FFCP PHASE2:Hg19::chr4:186661365..186661384,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p46@SORBS2
2.39e-66FFCP PHASE2:Hg19::chr16:47920709..47920716,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p4@uc002eex.1
2.39e-66FFCP PHASE1:Hg19::chr16:47920709..47920716,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p4@uc002eex.1
2.39e-66FFCP PHASE1:Hg19::chr5:126959900..126959932,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr5:126959900..126959932, +
2.39e-66FFCP PHASE2:Hg19::chr16:49669972..49669983,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr16:49669972..49669983, -
2.39e-66FFCP PHASE2:Hg19::chr16:67237164..67237171,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr16:67237164..67237171, +
2.39e-66FFCP PHASE2:Hg19::chr5:126959900..126959932,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr5:126959900..126959932, +
2.39e-66FFCP PHASE1:Hg19::chr9:135458021..135458030,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p6@BARHL1
2.39e-66FFCP PHASE1:Hg19::chr6:71665623..71665630,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p13@B3GAT2
2.39e-66FFCP PHASE1:Hg19::chr1:216692717..216692725,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr1:216692717..216692725, -
2.39e-66FFCP PHASE1:Hg19::chr16:49669972..49669983,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr16:49669972..49669983, -
2.39e-66FFCP PHASE2:Hg19::chr2:17381145..17381164,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr2:17381145..17381164, -
2.39e-66FFCP PHASE1:Hg19::chr5:126959946..126959960,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr5:126959946..126959960, +
2.39e-66FFCP PHASE2:Hg19::chr11:3253663..3253670,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p4@MRGPRE
2.39e-66FFCP PHASE1:Hg19::chr11:3253663..3253670,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p4@MRGPRE
2.39e-66FFCP PHASE2:Hg19::chr9:135458021..135458030,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p6@BARHL1
2.39e-66FFCP PHASE2:Hg19::chr1:216692717..216692725,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr1:216692717..216692725, -
2.39e-66FFCP PHASE2:Hg19::chr5:126959946..126959960,+#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr5:126959946..126959960, +
2.39e-66FFCP PHASE2:Hg19::chr11:3224982..3224985,-#_eb00bb794e6e9f2a74de8d1860d4a4b0p@chr11:3224982..3224985, -
6.53e-66FFCP PHASE2:Hg19::chr16:49601912..49601949,-#_dc8db32ab6a0201962a5a397908d367cp@chr16:49601912..49601949, -
6.53e-66FFCP PHASE1:Hg19::chr16:49601912..49601949,-#_dc8db32ab6a0201962a5a397908d367cp@chr16:49601912..49601949, -
1.79e-65FFCP PHASE2:Hg19::chr13:70682590..70682601,-#_b0ea7c7d23f2321ce4c94620ee1b4e7bp3@KLHL1
1.79e-65FFCP PHASE1:Hg19::chr13:70682590..70682601,-#_b0ea7c7d23f2321ce4c94620ee1b4e7bp3@KLHL1
1.33e-60FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_f4c3f5f6845f15154be78f44411a1d83p1@TPH2
1.33e-60FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_f4c3f5f6845f15154be78f44411a1d83p1@TPH2
8.17e-60FFCP PHASE1:Hg19::chr8:24775490..24775500,+#_7f873cd8ae0e1e5ab8701166bf1600c0p@chr8:24775490..24775500, +
8.17e-60FFCP PHASE2:Hg19::chr8:24775490..24775500,+#_7f873cd8ae0e1e5ab8701166bf1600c0p@chr8:24775490..24775500, +
1.83e-59FFCP PHASE1:Hg19::chr1:155291376..155291428,+#_dbeab8735b8720b561a7181c56aeb002p6@RUSC1
1.83e-59FFCP PHASE2:Hg19::chr1:155291376..155291428,+#_dbeab8735b8720b561a7181c56aeb002p6@RUSC1
1.51e-54FFCP PHASE1:Hg19::chr2:25720514..25720525,-#_06224900d863b248c6683509d4e11afcp16@DTNB
1.51e-54FFCP PHASE2:Hg19::chr2:25720514..25720525,-#_06224900d863b248c6683509d4e11afcp16@DTNB
1.12e-53FFCP PHASE2:Hg19::chr14:105833352..105833361,+#_725b055c45315eb5c1131428e7bcfe94p@chr14:105833352..105833361, +
1.12e-53FFCP PHASE1:Hg19::chr14:105833352..105833361,+#_725b055c45315eb5c1131428e7bcfe94p@chr14:105833352..105833361, +
1.68e-53FFCP PHASE1:Hg19::chr7:4877677..4877693,-#_a05b4f0230225a33a4b43a2e1b1440d9p5@RADIL
1.68e-53FFCP PHASE2:Hg19::chr7:4877677..4877693,-#_a05b4f0230225a33a4b43a2e1b1440d9p5@RADIL
2.19e-53FFCP PHASE2:Hg19::chr11:75379595..75379606,-#_c2042bcec4bce25181de6bd59cac97cdp17@MAP6
2.19e-53FFCP PHASE1:Hg19::chr11:75379595..75379606,-#_c2042bcec4bce25181de6bd59cac97cdp17@MAP6
2.87e-53FFCP PHASE1:Hg19::chr7:149480688..149480699,+#_8dd0b40674311f207a7b4e544b00cd60p@chr7:149480688..149480699, +
2.87e-53FFCP PHASE2:Hg19::chr7:149480688..149480699,+#_8dd0b40674311f207a7b4e544b00cd60p@chr7:149480688..149480699, +
3.75e-53FFCP PHASE1:Hg19::chrX:20075103..20075114,-#_f1ae82d3887fb897931ae30d1df12762p20@MAP7D2
3.75e-53FFCP PHASE2:Hg19::chrX:20075103..20075114,-#_f1ae82d3887fb897931ae30d1df12762p20@MAP7D2
6.39e-53FFCP PHASE1:Hg19::chr2:108602711..108602722,+#_78feb3f41eafedbe4c21a2f2baebd797p3@SLC5A7
6.39e-53FFCP PHASE2:Hg19::chr2:108602711..108602722,+#_78feb3f41eafedbe4c21a2f2baebd797p3@SLC5A7
1.14e-50FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_83a296a6eb32a5b1b6e1c92023081982p@chr2:72381655..72381673, -
1.14e-50FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_83a296a6eb32a5b1b6e1c92023081982p@chr2:72381655..72381673, -
1.59e-50FFCP PHASE2:Hg19::chrX:16753203..16753238,+#_5389a0c72ac0bd702dbb346716168d40p@chrX:16753203..16753238, +
1.59e-50FFCP PHASE1:Hg19::chrX:16753203..16753238,+#_5389a0c72ac0bd702dbb346716168d40p@chrX:16753203..16753238, +
4.38e-50FFCP PHASE1:Hg19::chr8:24775962..24775972,+#_9198372aa2b8315ba006babcc6bca7a8p@chr8:24775962..24775972, +
4.38e-50FFCP PHASE2:Hg19::chr8:24775962..24775972,+#_9198372aa2b8315ba006babcc6bca7a8p@chr8:24775962..24775972, +
1.2e-49FFCP PHASE2:Hg19::chr16:290098..290109,+#_9682ad85d76ab70e374097c99d5aa932p13@ITFG3
1.2e-49FFCP PHASE1:Hg19::chr16:290098..290109,+#_9682ad85d76ab70e374097c99d5aa932p13@ITFG3
2.62e-46FFCP PHASE2:Hg19::chr8:24775348..24775355,+#_4b899c2917a5cf207dab25b59bf88c9cp@chr8:24775348..24775355, +
2.62e-46FFCP PHASE1:Hg19::chr8:24775348..24775355,+#_4b899c2917a5cf207dab25b59bf88c9cp@chr8:24775348..24775355, +
4.17e-46FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_5627c0a43934a0365c1933cf9637e4c7p8@RASGRF1
4.17e-46FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_5627c0a43934a0365c1933cf9637e4c7p8@RASGRF1
7.74e-46FFCP PHASE1:Hg19::chr18:72202828..72202832,+#_f44eae2433648ce8e29ba5d89b015c30p@chr18:72202828..72202832, +
7.74e-46FFCP PHASE2:Hg19::chr18:72202828..72202832,+#_f44eae2433648ce8e29ba5d89b015c30p@chr18:72202828..72202832, +
9.03e-46FFCP PHASE2:Hg19::chr4:115519490..115519496,+#_e17fe7adf167dc54dcae7ae2b48b4494p11@UGT8
9.03e-46FFCP PHASE1:Hg19::chr9:116298778..116298788,+#_e17fe7adf167dc54dcae7ae2b48b4494p31@RGS3
9.03e-46FFCP PHASE2:Hg19::chr9:116298778..116298788,+#_e17fe7adf167dc54dcae7ae2b48b4494p31@RGS3
9.03e-46FFCP PHASE1:Hg19::chr4:115519490..115519496,+#_e17fe7adf167dc54dcae7ae2b48b4494p11@UGT8
5.0e-45FFCP PHASE1:Hg19::chr7:31569365..31569379,+#_1779a3ba82d0ce0c6a9ed2203b008cc2p1@CCDC129
5.0e-45FFCP PHASE2:Hg19::chr7:31569365..31569379,+#_1779a3ba82d0ce0c6a9ed2203b008cc2p1@CCDC129
9.77e-45FFCP PHASE1:Hg19::chr22:37608711..37608730,-#_ac15d7a69f7ff881f49092e381e50bacp8@SSTR3
9.77e-45FFCP PHASE2:Hg19::chr22:37608711..37608730,-#_ac15d7a69f7ff881f49092e381e50bacp8@SSTR3
1.22e-44FFCP PHASE1:Hg19::chr17:7559346..7559354,+#_5428b939e9a0cb1df4d5f262e44e903ep@chr17:7559346..7559354, +
1.22e-44FFCP PHASE2:Hg19::chr17:7559346..7559354,+#_5428b939e9a0cb1df4d5f262e44e903ep@chr17:7559346..7559354, +
1.53e-44FFCP PHASE2:Hg19::chr12:56881851..56881862,-#_322bb51918822741d961a53c7d3d7a6ap7@GLS2
1.53e-44FFCP PHASE1:Hg19::chr12:56881851..56881862,-#_322bb51918822741d961a53c7d3d7a6ap7@GLS2
1.91e-44FFCP PHASE1:Hg19::chr9:112404786..112404791,+#_84c6de93cd8c0a4342bf63e894fd24bcp@chr9:112404786..112404791, +
1.91e-44FFCP PHASE2:Hg19::chr9:112404786..112404791,+#_84c6de93cd8c0a4342bf63e894fd24bcp@chr9:112404786..112404791, +
2.38e-44FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_96cdbb70b11aff088ec797df4bf5bb51p15@DTNB
2.38e-44FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_96cdbb70b11aff088ec797df4bf5bb51p15@DTNB
2.97e-44FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_6b40ede0776143150ab00581f4650364p17@BDNF
2.97e-44FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_6b40ede0776143150ab00581f4650364p17@BDNF

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