UBERON:0001052: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=rectum | |name=rectum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000059;;UBERON:0006866;;UBERON:0012361 | |part_of=UBERON:0000059;;UBERON:0006866;;UBERON:0012361 | ||
Latest revision as of 17:15, 12 September 2014
| Name: | rectum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum] | ||
| Xrefs: |
| ||
| Synonyms: |
"intestinum rectum" RELATED [BTO:0001158] "rectal sac" RELATED [] | ||
| Comments: | Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html | ||
| Alt_id: | UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| develops_from: | UBERON:0001046(hindgut) |
| part_of: | UBERON:0000059(large intestine),UBERON:0006866(terminal part of digestive tract),UBERON:0012361(internal anal region) |
Children
| is a: | FF:0010208 (rectum - adult) |
|---|---|
| derives from: | FF:0010067 (human rectum - fetal sample),FF:0101532 (rectal cancer cell line sample) |
| part of: | FF:0010067 (human rectum - fetal sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10067-101I4 (rectum, fetal, donor1)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10654-109B6
- 10657-109B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001052 (rectum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_b71b4f188c38c1a4b32cfefeb7ca6346 | p@chr18:28860939..28860953, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_b71b4f188c38c1a4b32cfefeb7ca6346 | p@chr18:28860939..28860953, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_120d0ac52f8604225083a0acc02c09a0 | p@chr6:150777673..150777685, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_120d0ac52f8604225083a0acc02c09a0 | p@chr6:150777673..150777685, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:31683061..31683070,+#_80131c3ac5a106b7cfe232e3f05959b9 | p5@LY6G6D |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:19707156..19707203, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:89797154..89797172,+#_80131c3ac5a106b7cfe232e3f05959b9 | p9@STEAP2 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr12:77730114..77730120, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:97747048..97747059,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr5:97747048..97747059, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:91774965..91774974,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:91774965..91774974, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:30499737..30499761, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr21:37143915..37143924, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:66354424..66354472, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:46093198..46093203, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:104610923..104610939,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr9:104610923..104610939, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr16:55344418..55344442, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128419359..128419367,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128419359..128419367, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:78621016..78621042,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:78621016..78621042, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:219739282..219739288,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:219739282..219739288, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:32790605..32790619, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:31632597..31632607,-#_80131c3ac5a106b7cfe232e3f05959b9 | p13@DENND5B |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:156822661..156822696, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:110258158..110258170,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:110258158..110258170, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174023..157174034,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:157174023..157174034, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:198324742..198324745,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174324..157174332,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:157174324..157174332, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:139373728..139373733,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:139373728..139373733, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:57619538..57619575,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr5:57619538..57619575, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128259602..128259609,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128259602..128259609, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:127711416..127711419, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87049573..87049608,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:87049573..87049608, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127438794..127438800,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:127438794..127438800, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:93128331..93128338,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:93128331..93128338, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:48703799..48703838,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:48703799..48703838, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128260156..128260173,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128260156..128260173, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:28720966..28720970,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr18:28720966..28720970, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:91774965..91774974,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:91774965..91774974, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127817393..127817400,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:127817393..127817400, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:140054724..140054735, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:30499737..30499761, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:205036975..205037009, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148164659..148164667,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:148164659..148164667, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:87232406..87232409, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:71987749..71987774,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr5:71987749..71987774, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:24726466..24726472,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr10:24726466..24726472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr16:53671764..53671771, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174023..157174034,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:157174023..157174034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:19522690..19522704, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:104674708..104674749,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:99425711..99425716,-#_80131c3ac5a106b7cfe232e3f05959b9 | p1@ENST00000518956 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:37143915..37143924,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr21:37143915..37143924, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128418747..128418756,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128418747..128418756, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:39550015..39550034,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr18:39550015..39550034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr5:57619538..57619575, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:28541425..28541439,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:28541425..28541439, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:107667666..107667673,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:107667666..107667673, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:156822661..156822696, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr14:26793415..26793426, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:78621016..78621042, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:32790683..32790693,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:32790683..32790693, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:127438794..127438800, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:97958802..97958804,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:97958802..97958804, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174062..157174071,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr4:157174062..157174071, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:66794389..66794398,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127568784..127568794,+#_80131c3ac5a106b7cfe232e3f05959b9 | p6@ENST00000524320 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr3:139373728..139373733, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:77730114..77730120,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr12:77730114..77730120, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr10:24726466..24726472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128807259..128807281,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:99661014..99661016,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:99661014..99661016, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:65466889..65466894,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128260156..128260173, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:127711472..127711475,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:127711472..127711475, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128691603..128691614,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:128691603..128691614, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87232406..87232409,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr7:87232406..87232409, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:53252911..53252918,-#_80131c3ac5a106b7cfe232e3f05959b9 | p106@TCF4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:127711416..127711419,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:127711416..127711419, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:71987749..71987774,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr5:71987749..71987774, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:191384421..191384433,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr2:191384421..191384433, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8389389..8389429,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:8389389..8389429, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:127817393..127817400, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:185823573..185823578,-#_80131c3ac5a106b7cfe232e3f05959b9 | p26@ETV5 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127440115..127440120,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr8:127440115..127440120, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:93128346..93128356,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:93128346..93128356, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:54830821..54830841, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr13:110258158..110258170, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:31632584..31632589,-#_80131c3ac5a106b7cfe232e3f05959b9 | p20@DENND5B |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:5491081..5491106,+#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr6:5491081..5491106, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:93128331..93128338,-#_80131c3ac5a106b7cfe232e3f05959b9 | p@chr1:93128331..93128338, - |
