Personal tools

UBERON:0001389: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001389
|alt_id=UBERON:FMA_22542-MA_0002424
|name=soleus
|anatomical_img_id=FMA:22542
|namespace=
|def="a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus_muscle]
|xref=BTO:0001265;;EFO:0001946;;FMA:22542;;galen:Soleus;;http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg;;MA:0002424;;ncithesaurus:Soleus;;SCTID:181702007
|is_a=UBERON:0004256
|synonym="soleus muscle" RELATED [BTO:0001265]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_22542-MA_0002424
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus_muscle]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001389
|is_a=UBERON:0004256
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=soleus muscle
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001665
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:9611
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:9611
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="soleus muscle" RELATED [BTO:0001265]
|union_of=
|xref=BTO:0001265;;EFO:0001946;;FMA:22542;;galen:Soleus;;http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg;;MA:0002424;;ncithesaurus:Soleus;;SCTID:181702007
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:soleus muscle
Namespace:FANTOM
Definition:"a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus_muscle]
Xrefs:
links:

BTO:0001265
EFO:0001946
FMA:22542
galen:Soleus
[1]
[2]
MA:0002424
ncithesaurus:Soleus

SCTID:181702007
Synonyms: "soleus muscle" RELATED [BTO:0001265]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_22542-MA_0002424
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004256(hindlimb zeugopod muscle)
part_of:UBERON:0001665(triceps surae)



Children

derives from:FF:0011173 (human skeletal muscle - soleus muscle sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001389 (soleus muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_bd484e616af2dc8f18fa0b135f86849ap@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_bd484e616af2dc8f18fa0b135f86849ap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_bd484e616af2dc8f18fa0b135f86849ap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_bd484e616af2dc8f18fa0b135f86849ap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_bd484e616af2dc8f18fa0b135f86849ap@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_bd484e616af2dc8f18fa0b135f86849ap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_bd484e616af2dc8f18fa0b135f86849ap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_bd484e616af2dc8f18fa0b135f86849ap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_bd484e616af2dc8f18fa0b135f86849ap@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_bd484e616af2dc8f18fa0b135f86849ap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_bd484e616af2dc8f18fa0b135f86849ap@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_bd484e616af2dc8f18fa0b135f86849ap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_bd484e616af2dc8f18fa0b135f86849ap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_bd484e616af2dc8f18fa0b135f86849ap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_bd484e616af2dc8f18fa0b135f86849ap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_bd484e616af2dc8f18fa0b135f86849ap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_bd484e616af2dc8f18fa0b135f86849ap@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_bd484e616af2dc8f18fa0b135f86849ap@chr10:79759687..79759690, +
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0p@chr2:152553958..152553964, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_f594d6205b0638f30738120590e662b3p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_f594d6205b0638f30738120590e662b3p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_f594d6205b0638f30738120590e662b3p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_f594d6205b0638f30738120590e662b3p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_f594d6205b0638f30738120590e662b3p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_f594d6205b0638f30738120590e662b3p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_f594d6205b0638f30738120590e662b3p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_f594d6205b0638f30738120590e662b3p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_f594d6205b0638f30738120590e662b3p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_f594d6205b0638f30738120590e662b3p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_f594d6205b0638f30738120590e662b3p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_f594d6205b0638f30738120590e662b3p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_f594d6205b0638f30738120590e662b3p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_f594d6205b0638f30738120590e662b3p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_f594d6205b0638f30738120590e662b3p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_f594d6205b0638f30738120590e662b3p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_f594d6205b0638f30738120590e662b3p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_f594d6205b0638f30738120590e662b3p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_f594d6205b0638f30738120590e662b3p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_f594d6205b0638f30738120590e662b3p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_f594d6205b0638f30738120590e662b3p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_f594d6205b0638f30738120590e662b3p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_f594d6205b0638f30738120590e662b3p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_f594d6205b0638f30738120590e662b3p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_f594d6205b0638f30738120590e662b3p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_f594d6205b0638f30738120590e662b3p@chr2:179656442..179656451, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001389&oldid=3277235"