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{{UBERON
{{UBERON
|id=UBERON:0001690
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|name=ear
|anatomical_img_id=FMA:52780
|namespace=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
|is_a=UBERON:0000020;;UBERON:0010314
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001690
|is_a=UBERON:0000020 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=ear
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0002105
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;uberon_slim
|preceded_by=
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|union_of=
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Strc
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_1d13cb136fd2abf98a4e0d45469142ffp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_1d13cb136fd2abf98a4e0d45469142ffp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_1d13cb136fd2abf98a4e0d45469142ffp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_1d13cb136fd2abf98a4e0d45469142ffp21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_1d13cb136fd2abf98a4e0d45469142ffp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_1d13cb136fd2abf98a4e0d45469142ffp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_1d13cb136fd2abf98a4e0d45469142ffp5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_1d13cb136fd2abf98a4e0d45469142ffp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Tecta

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