UBERON:0001744: Difference between revisions
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|located_in= | |located_in= | ||
|name=lymphoid tissue | |name=lymphoid tissue | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002193;;UBERON:0002465 | |part_of=UBERON:0002193;;UBERON:0002465 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | lymphoid tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"lymphatic tissue" EXACT [] "lymphocytic tissue" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_55220-MA_0002436 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|---|
| part_of: | UBERON:0002193(hemolymphoid system),UBERON:0002465(lymphoid system) |
Children
| is a: | UBERON:0012069 (epithelium-associated lymphoid tissue) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001744 (lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaa | p7@CU692075 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaa | p7@CU692075 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaa | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaa | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaa | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaa | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaa | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaa | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaa | p2@IGHV3-53 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p30@MUC5B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p30@MUC5B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264 | p@chr19:14662395..14662414, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p6@METTL19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p6@METTL19 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69f | p@chr11:1260725..1260734, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr9:69086930..69086933, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr19:38060099..38060102, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr6:69785263..69785268, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr9:69086930..69086933, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr6:69785263..69785268, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525 | p@chr19:38060099..38060102, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23 | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23 | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23 | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23 | p2@FCRL4 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64 | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64 | p1@BC131817 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64 | p1@BC131817 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64 | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64 | p@chr14:103560509..103560517, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6c | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6c | p10@KLK11 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_bfe3c20827da2e88dcffdec71251ae6c | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6c | p10@KLK11 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6c | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6c | p43@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_bfe3c20827da2e88dcffdec71251ae6c | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6c | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6c | p43@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_bfe3c20827da2e88dcffdec71251ae6c | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_bfe3c20827da2e88dcffdec71251ae6c | p58@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_bfe3c20827da2e88dcffdec71251ae6c | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_bfe3c20827da2e88dcffdec71251ae6c | p58@LPP |
