Personal tools

UBERON:0001902: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001902
|alt_id=UBERON:FMA_62017-MA_0001553
|name=epithelium of small intestine
|namespace=
|def="An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
|xref=BTO:0001258;;FMA:62017;;MA:0001553;;SCTID:45480009;;TAO:0005127;;ZFA:0005127
|is_a=UBERON:0001277
|synonym="epithelial tissue of small bowel" EXACT [OBOL:automatic];;"epithelial tissue of small intestine" EXACT [OBOL:automatic];;"epithelium of small bowel" EXACT [OBOL:automatic];;"mid intestine epithelium" EXACT [ZFA:0005127];;"small bowel epithelial tissue" EXACT [OBOL:automatic];;"small bowel epithelium" EXACT [OBOL:automatic];;"small intestinal epithelium" EXACT [];;"small intestine epithelial tissue" EXACT [OBOL:automatic];;"small intestine epithelium" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_62017-MA_0001553
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001902
|is_a=UBERON:0001277 ;;UBERON:0006799
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=epithelium of small intestine
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002108;;UBERON:0001204;;UBERON:0002108
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intestinal epithelium which lines the lumen of the mid intestine.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intestinal epithelium which lines the lumen of the mid intestine.[TAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="epithelial tissue of small bowel" EXACT [OBOL:automatic];;"epithelial tissue of small intestine" EXACT [OBOL:automatic];;"epithelium of small bowel" EXACT [OBOL:automatic];;"mid intestine epithelium" EXACT [ZFA:0005127];;"small bowel epithelial tissue" EXACT [OBOL:automatic];;"small bowel epithelium" EXACT [OBOL:automatic];;"small intestinal epithelium" EXACT [];;"small intestine epithelial tissue" EXACT [OBOL:automatic];;"small intestine epithelium" EXACT []
|union_of=
|xref=BTO:0001258;;FMA:62017;;MA:0001553;;SCTID:45480009;;TAO:0005127;;ZFA:0005127
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:epithelium of small intestine
Namespace:FANTOM
Definition:"An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0001258
FMA:62017
MA:0001553
SCTID:45480009
TAO:0005127

ZFA:0005127
Synonyms: "epithelial tissue of small bowel" EXACT [OBOL:automatic]
"epithelial tissue of small intestine" EXACT [OBOL:automatic]
"epithelium of small bowel" EXACT [OBOL:automatic]
"mid intestine epithelium" EXACT [ZFA:0005127]
"small bowel epithelial tissue" EXACT [OBOL:automatic]
"small bowel epithelium" EXACT [OBOL:automatic]
"small intestinal epithelium" EXACT []
"small intestine epithelial tissue" EXACT [OBOL:automatic]
"small intestine epithelium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62017-MA_0001553
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001277(intestinal epithelium),UBERON:0006799(glandular epithelium)
part_of:UBERON:0002108(small intestine),UBERON:0001204(mucosa of small intestine),UBERON:0002108(small intestine)



Children

is a:UBERON:0013636 (epithelium of intestinal villus)
part of:UBERON:0013636 (epithelium of intestinal villus),CL:1000343 (paneth cell of epithelium of small intestine)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001902 (epithelium of small intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Intestinal epithelium which lines the lumen of the mid intestine.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.