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{{UBERON
{{UBERON
|id=UBERON:0002241
|name=chondrocranium
|namespace=
|def="Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, ZFA:0001424]
|xref=AAO:0010169;;EHDAA2:0000243;;EMAPA:17681;;TAO:0001424;;VHOG:0000288;;ZFA:0001424
|is_a=UBERON:0000032;;UBERON:0004765
|synonym="calvarium" RELATED [MA:0000317];;"neurocranium" RELATED INCONSISTENT [MA:0000317]
|comment=note the definition here specifically mentions cartilage or cartilage replacement bones. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes membrane bones
|alt_id=UBERON:FMA_76621-XAO_0003059-ZFA_0001424
|alt_id=UBERON:FMA_76621-XAO_0003059-ZFA_0001424
|disjoint_from=
|comment=Editor/AO notes: we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal). Taxon notes: covers the brain dorsally in chondrichthyans
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, Wikipedia:Chondrocranium]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002241
|is_a=UBERON:0011159
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001703
|name=chondrocranium
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[AAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[TAO]" xsd:string
|subset=vertebrate_core
|synonym="calvarium" RELATED [MA:0000317];;"neurocranium" RELATED INCONSISTENT [MA:0000317]
|union_of=
|xref=AAO:0010169;;EHDAA2:0000243;;EMAPA:17681;;TAO:0001424;;VHOG:0000288;;ZFA:0001424
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:chondrocranium
Namespace:FANTOM
Definition:"Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." Wikipedia:Chondrocranium
Xrefs:
links:

AAO:0010169
EHDAA2:0000243
EMAPA:17681
TAO:0001424
VHOG:0000288

ZFA:0001424
Synonyms: "calvarium" RELATED [MA:0000317]
"neurocranium" RELATED INCONSISTENT [MA:0000317]
Comments:Editor/AO notes: we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal). Taxon notes: covers the brain dorsally in chondrichthyans
Alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011159(primary subdivision of cranial skeletal system)



Children

part of:UBERON:0002517 (basicranium),UBERON:0003112 (olfactory region)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002241 (chondrocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.23e-66FFCP PHASE1:Hg19::chr12:106532542..106532545,-#_7be21ee4cecebfc9239d3416097b7c5ap15@NUAK1
1.23e-66FFCP PHASE2:Hg19::chr12:106532542..106532545,-#_7be21ee4cecebfc9239d3416097b7c5ap15@NUAK1
1.23e-66FFCP PHASE1:Hg19::chr16:77039159..77039160,-#_7be21ee4cecebfc9239d3416097b7c5ap@chr16:77039159..77039160, -
1.23e-66FFCP PHASE2:Hg19::chr16:77039159..77039160,-#_7be21ee4cecebfc9239d3416097b7c5ap@chr16:77039159..77039160, -
2.39e-66FFCP PHASE1:Hg19::chr19:46928841..46928843,-#_650e4799382366fcf950be7375363d6fp@chr19:46928841..46928843, -
2.39e-66FFCP PHASE2:Hg19::chr19:46928841..46928843,-#_650e4799382366fcf950be7375363d6fp@chr19:46928841..46928843, -
4.66e-66FFCP PHASE1:Hg19::chr3:62838269..62838272,-#_e1eaad143bf79d3102832024eb6b7676p@chr3:62838269..62838272, -
4.66e-66FFCP PHASE2:Hg19::chr3:62838269..62838272,-#_e1eaad143bf79d3102832024eb6b7676p@chr3:62838269..62838272, -
3.99e-50FFCP PHASE1:Hg19::chr22:20239738..20239751,-#_d9a5491fc6c54809f21233c8f79f0535p@chr22:20239738..20239751, -
3.99e-50FFCP PHASE2:Hg19::chr6:133275558..133275575,+#_d9a5491fc6c54809f21233c8f79f0535p@chr6:133275558..133275575, +
3.99e-50FFCP PHASE2:Hg19::chr9:87342674..87342684,+#_d9a5491fc6c54809f21233c8f79f0535p@chr9:87342674..87342684, +
3.99e-50FFCP PHASE1:Hg19::chr12:79611322..79611329,+#_d9a5491fc6c54809f21233c8f79f0535p6@AB384875
3.99e-50FFCP PHASE2:Hg19::chr22:20239738..20239751,-#_d9a5491fc6c54809f21233c8f79f0535p@chr22:20239738..20239751, -
3.99e-50FFCP PHASE2:Hg19::chr12:79611322..79611329,+#_d9a5491fc6c54809f21233c8f79f0535p6@AB384875
3.99e-50FFCP PHASE1:Hg19::chr9:87342674..87342684,+#_d9a5491fc6c54809f21233c8f79f0535p@chr9:87342674..87342684, +
3.99e-50FFCP PHASE1:Hg19::chr6:133275558..133275575,+#_d9a5491fc6c54809f21233c8f79f0535p@chr6:133275558..133275575, +
6.58e-50FFCP PHASE1:Hg19::chr9:10248507..10248511,-#_a60a990e58865afbce3f15769070c0fap@chr9:10248507..10248511, -
6.58e-50FFCP PHASE1:Hg19::chr12:10375591..10375602,+#_a60a990e58865afbce3f15769070c0fap@chr12:10375591..10375602, +
6.58e-50FFCP PHASE2:Hg19::chr5:94620792..94620803,-#_a60a990e58865afbce3f15769070c0fap@chr5:94620792..94620803, -
6.58e-50FFCP PHASE1:Hg19::chr1:208443938..208443947,-#_a60a990e58865afbce3f15769070c0fap@chr1:208443938..208443947, -
6.58e-50FFCP PHASE1:Hg19::chr11:83429564..83429567,-#_a60a990e58865afbce3f15769070c0fap@chr11:83429564..83429567, -
6.58e-50FFCP PHASE2:Hg19::chr12:10375591..10375602,+#_a60a990e58865afbce3f15769070c0fap@chr12:10375591..10375602, +
6.58e-50FFCP PHASE2:Hg19::chr11:83429564..83429567,-#_a60a990e58865afbce3f15769070c0fap@chr11:83429564..83429567, -
6.58e-50FFCP PHASE2:Hg19::chr1:208443938..208443947,-#_a60a990e58865afbce3f15769070c0fap@chr1:208443938..208443947, -
6.58e-50FFCP PHASE2:Hg19::chr9:10248507..10248511,-#_a60a990e58865afbce3f15769070c0fap@chr9:10248507..10248511, -
6.58e-50FFCP PHASE1:Hg19::chr5:94620792..94620803,-#_a60a990e58865afbce3f15769070c0fap@chr5:94620792..94620803, -
6.62e-41FFCP PHASE2:Hg19::chr6:46190162..46190170,-#_46ad831a8d389a1ef9d40447aaa48173p@chr6:46190162..46190170, -
6.62e-41FFCP PHASE1:Hg19::chr6:46190162..46190170,-#_46ad831a8d389a1ef9d40447aaa48173p@chr6:46190162..46190170, -
9.91e-41FFCP PHASE1:Hg19::chr15:52103928..52103940,+#_e01358b281c490af0422bf35c0fe3976p@chr15:52103928..52103940, +
9.91e-41FFCP PHASE1:Hg19::chr4:8014649..8014653,-#_e01358b281c490af0422bf35c0fe3976p@chr4:8014649..8014653, -
9.91e-41FFCP PHASE2:Hg19::chr4:8014649..8014653,-#_e01358b281c490af0422bf35c0fe3976p@chr4:8014649..8014653, -
9.91e-41FFCP PHASE2:Hg19::chr15:52103928..52103940,+#_e01358b281c490af0422bf35c0fe3976p@chr15:52103928..52103940, +
2.21e-40FFCP PHASE2:Hg19::chr1:160097523..160097534,+#_49fedb952333e7496e2f2223dcd0c9a0p20@ATP1A2
2.21e-40FFCP PHASE1:Hg19::chr1:160097523..160097534,+#_49fedb952333e7496e2f2223dcd0c9a0p20@ATP1A2
3.3e-40FFCP PHASE1:Hg19::chr4:6437090..6437101,-#_f9cd70c8da2b812b542e5bf430c9c9afp@chr4:6437090..6437101, -
3.3e-40FFCP PHASE1:Hg19::chr16:6729906..6729908,+#_f9cd70c8da2b812b542e5bf430c9c9afp@chr16:6729906..6729908, +
3.3e-40FFCP PHASE2:Hg19::chr2:17830681..17830687,+#_f9cd70c8da2b812b542e5bf430c9c9afp@chr2:17830681..17830687, +
3.3e-40FFCP PHASE2:Hg19::chr4:6437090..6437101,-#_f9cd70c8da2b812b542e5bf430c9c9afp@chr4:6437090..6437101, -
3.3e-40FFCP PHASE2:Hg19::chr16:6729906..6729908,+#_f9cd70c8da2b812b542e5bf430c9c9afp@chr16:6729906..6729908, +
3.3e-40FFCP PHASE1:Hg19::chr2:17830681..17830687,+#_f9cd70c8da2b812b542e5bf430c9c9afp@chr2:17830681..17830687, +
1.84e-34FFCP PHASE1:Hg19::chr7:130151176..130151185,+#_ff27a10ca2e6dc15261c298a369eb891p@chr7:130151176..130151185, +
1.84e-34FFCP PHASE2:Hg19::chr1:75038668..75038679,-#_ff27a10ca2e6dc15261c298a369eb891p17@C1orf173
1.84e-34FFCP PHASE2:Hg19::chr15:43814593..43814598,+#_ff27a10ca2e6dc15261c298a369eb891p36@MAP1A
1.84e-34FFCP PHASE2:Hg19::chr7:130151176..130151185,+#_ff27a10ca2e6dc15261c298a369eb891p@chr7:130151176..130151185, +
1.84e-34FFCP PHASE1:Hg19::chr1:75038668..75038679,-#_ff27a10ca2e6dc15261c298a369eb891p17@C1orf173
1.84e-34FFCP PHASE1:Hg19::chr15:43814593..43814598,+#_ff27a10ca2e6dc15261c298a369eb891p36@MAP1A
2.58e-34FFCP PHASE2:Hg19::chr9:114174370..114174381,-#_c0ea83195e46facf607e4e8b3e21160bp@chr9:114174370..114174381, -
2.58e-34FFCP PHASE1:Hg19::chr9:114174370..114174381,-#_c0ea83195e46facf607e4e8b3e21160bp@chr9:114174370..114174381, -
3.61e-34FFCP PHASE2:Hg19::chr7:78131043..78131064,-#_510d799a6d9e98203f3c1570a9cbf42ep@chr7:78131043..78131064, -
3.61e-34FFCP PHASE2:Hg19::chr5:58148556..58148559,+#_510d799a6d9e98203f3c1570a9cbf42ep@chr5:58148556..58148559, +
3.61e-34FFCP PHASE2:Hg19::chr1:154840487..154840496,-#_510d799a6d9e98203f3c1570a9cbf42ep13@KCNN3
3.61e-34FFCP PHASE1:Hg19::chr5:58148556..58148559,+#_510d799a6d9e98203f3c1570a9cbf42ep@chr5:58148556..58148559, +
3.61e-34FFCP PHASE1:Hg19::chr7:78131043..78131064,-#_510d799a6d9e98203f3c1570a9cbf42ep@chr7:78131043..78131064, -
3.61e-34FFCP PHASE1:Hg19::chr1:154840487..154840496,-#_510d799a6d9e98203f3c1570a9cbf42ep13@KCNN3
5.05e-34FFCP PHASE2:Hg19::chr20:44688143..44688157,+#_855507624a5a2fca513a64ad7fe77985p@chr20:44688143..44688157, +
5.05e-34FFCP PHASE2:Hg19::chr6:71666699..71666708,-#_855507624a5a2fca513a64ad7fe77985p12@B3GAT2
5.05e-34FFCP PHASE2:Hg19::chr4:120464080..120464091,+#_855507624a5a2fca513a64ad7fe77985p@chr4:120464080..120464091, +
5.05e-34FFCP PHASE1:Hg19::chr2:86707340..86707351,+#_855507624a5a2fca513a64ad7fe77985p@chr2:86707340..86707351, +
5.05e-34FFCP PHASE1:Hg19::chr20:44688143..44688157,+#_855507624a5a2fca513a64ad7fe77985p@chr20:44688143..44688157, +
5.05e-34FFCP PHASE1:Hg19::chr6:71666699..71666708,-#_855507624a5a2fca513a64ad7fe77985p12@B3GAT2
5.05e-34FFCP PHASE2:Hg19::chr2:86707340..86707351,+#_855507624a5a2fca513a64ad7fe77985p@chr2:86707340..86707351, +
5.05e-34FFCP PHASE1:Hg19::chr4:120464080..120464091,+#_855507624a5a2fca513a64ad7fe77985p@chr4:120464080..120464091, +
7.06e-34FFCP PHASE1:Hg19::chr18:24434430..24434442,-#_3ce963163f955b0a2090889774e745ebp15@AQP4
7.06e-34FFCP PHASE2:Hg19::chr10:102089952..102089973,-#_3ce963163f955b0a2090889774e745ebp2@PKD2L1
7.06e-34FFCP PHASE1:Hg19::chr7:146192665..146192668,+#_3ce963163f955b0a2090889774e745ebp@chr7:146192665..146192668, +
7.06e-34FFCP PHASE1:Hg19::chr5:149613437..149613441,-#_3ce963163f955b0a2090889774e745ebp@chr5:149613437..149613441, -
7.06e-34FFCP PHASE1:Hg19::chr2:116499014..116499018,+#_3ce963163f955b0a2090889774e745ebp@chr2:116499014..116499018, +
7.06e-34FFCP PHASE2:Hg19::chr18:24434430..24434442,-#_3ce963163f955b0a2090889774e745ebp15@AQP4
7.06e-34FFCP PHASE1:Hg19::chr10:102089952..102089973,-#_3ce963163f955b0a2090889774e745ebp2@PKD2L1
7.06e-34FFCP PHASE2:Hg19::chr7:146192665..146192668,+#_3ce963163f955b0a2090889774e745ebp@chr7:146192665..146192668, +
7.06e-34FFCP PHASE2:Hg19::chr5:149613437..149613441,-#_3ce963163f955b0a2090889774e745ebp@chr5:149613437..149613441, -
7.06e-34FFCP PHASE2:Hg19::chr2:116499014..116499018,+#_3ce963163f955b0a2090889774e745ebp@chr2:116499014..116499018, +
9.85e-34FFCP PHASE1:Hg19::chr7:13141010..13141018,+#_3c945fe66a118ebeaf1e68e860e6f187p2@ENST00000443947
9.85e-34FFCP PHASE2:Hg19::chr2:210560796..210560807,+#_3c945fe66a118ebeaf1e68e860e6f187p50@MAP2
9.85e-34FFCP PHASE2:Hg19::chr3:16926062..16926073,+#_3c945fe66a118ebeaf1e68e860e6f187p10@PLCL2
9.85e-34FFCP PHASE2:Hg19::chr8:133141199..133141206,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr8:133141199..133141206, -
9.85e-34FFCP PHASE1:Hg19::chr7:22391020..22391048,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr7:22391020..22391048, -
9.85e-34FFCP PHASE2:Hg19::chr14:93401419..93401433,+#_3c945fe66a118ebeaf1e68e860e6f187p@chr14:93401419..93401433, +
9.85e-34FFCP PHASE1:Hg19::chr14:93401419..93401433,+#_3c945fe66a118ebeaf1e68e860e6f187p@chr14:93401419..93401433, +
9.85e-34FFCP PHASE1:Hg19::chr2:55254526..55254550,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr2:55254526..55254550, -
9.85e-34FFCP PHASE2:Hg19::chr7:13141010..13141018,+#_3c945fe66a118ebeaf1e68e860e6f187p2@ENST00000443947
9.85e-34FFCP PHASE1:Hg19::chr2:210560796..210560807,+#_3c945fe66a118ebeaf1e68e860e6f187p50@MAP2
9.85e-34FFCP PHASE1:Hg19::chr8:133141199..133141206,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr8:133141199..133141206, -
9.85e-34FFCP PHASE2:Hg19::chr7:22391020..22391048,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr7:22391020..22391048, -
9.85e-34FFCP PHASE2:Hg19::chr2:55254526..55254550,-#_3c945fe66a118ebeaf1e68e860e6f187p@chr2:55254526..55254550, -
9.85e-34FFCP PHASE1:Hg19::chr3:16926062..16926073,+#_3c945fe66a118ebeaf1e68e860e6f187p10@PLCL2
7.48e-30FFCP PHASE1:Hg19::chr4:21506086..21506087,-#_8de8dedc0389f5bb62a539111cd49d76p@chr4:21506086..21506087, -
7.48e-30FFCP PHASE2:Hg19::chr4:21506086..21506087,-#_8de8dedc0389f5bb62a539111cd49d76p@chr4:21506086..21506087, -
9.99e-30FFCP PHASE2:Hg19::chr11:133818054..133818066,-#_ca60245bda252d8d2902118149b2a72ap@chr11:133818054..133818066, -
9.99e-30FFCP PHASE1:Hg19::chr2:2754109..2754121,-#_ca60245bda252d8d2902118149b2a72ap@chr2:2754109..2754121, -
9.99e-30FFCP PHASE1:Hg19::chr7:15014398..15014409,-#_ca60245bda252d8d2902118149b2a72ap19@DGKB
9.99e-30FFCP PHASE1:Hg19::chr17:1029026..1029035,-#_ca60245bda252d8d2902118149b2a72ap37@ABR
9.99e-30FFCP PHASE1:Hg19::chr11:133818054..133818066,-#_ca60245bda252d8d2902118149b2a72ap@chr11:133818054..133818066, -
9.99e-30FFCP PHASE2:Hg19::chr2:2754109..2754121,-#_ca60245bda252d8d2902118149b2a72ap@chr2:2754109..2754121, -
9.99e-30FFCP PHASE2:Hg19::chr17:1029026..1029035,-#_ca60245bda252d8d2902118149b2a72ap37@ABR
9.99e-30FFCP PHASE2:Hg19::chr7:15014398..15014409,-#_ca60245bda252d8d2902118149b2a72ap19@DGKB
1.33e-29FFCP PHASE2:Hg19::chr4:88415540..88415543,-#_dbd0d117871a1c53fff531c6fca57263p@chr4:88415540..88415543, -
1.33e-29FFCP PHASE1:Hg19::chr4:88415540..88415543,-#_dbd0d117871a1c53fff531c6fca57263p@chr4:88415540..88415543, -
2.37e-29FFCP PHASE2:Hg19::chr2:127839576..127839585,-#_0f85aa71b215d01574a619278c18761cp17@BIN1
2.37e-29FFCP PHASE1:Hg19::chr3:121013244..121013255,+#_0f85aa71b215d01574a619278c18761cp@chr3:121013244..121013255, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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