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{{UBERON
{{UBERON
|id=UBERON:0002372
|alt_id=UBERON:FMA_9609-MA_0000143
|name=tonsil
|namespace=
|def="Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
|xref=BTO:0001387;;EFO:0001401;;EV:0100052;;FMA:9609;;GAID:341;;MA:0000143;;MESH:A.03.867.603.925;;ncithesaurus:Tonsil;;OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA;;VHOG:0001139
|is_a=UBERON:0000078;;UBERON:0001744
|synonym="Mandel" RELATED [BTO:0001387]
|comment=Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
|comment=Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
|alt_id=UBERON:FMA_9609-MA_0000143
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002372
|is_a=UBERON:0001962 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000166;;UBERON:0001735
|name=tonsil
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001735
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="Mandel" RELATED [BTO:0001387]
|union_of=
|xref=BTO:0001387;;EFO:0001401;;EV:0100052;;FMA:9609;;GAID:341;;MA:0000143;;MESH:A.03.867.603.925;;ncithesaurus:Tonsil;;ncithesaurus:Tonsilar_Tissue;;ncithesaurus:Tonsillar_Lymphoid_Tissue;;OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA;;VHOG:0001139
}}
}}

Latest revision as of 17:30, 12 September 2014

Name:tonsil
Namespace:FANTOM
Definition:"Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
Xrefs:
links:

BTO:0001387
EFO:0001401
EV:0100052
FMA:9609
GAID:341
MA:0000143
MESH:A.03.867.603.925
ncithesaurus:Tonsil
ncithesaurus:Tonsilar_Tissue
ncithesaurus:Tonsillar_Lymphoid_Tissue
OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA

VHOG:0001139
Synonyms: "Mandel" RELATED [BTO:0001387]
Comments:Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
Alt_id: UBERON:FMA_9609-MA_0000143
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001962(gut-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0001735(tonsillar ring)



Children

derives from:FF:0010047 (human tonsil - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002372 (tonsil), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12337006..12337010, +
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4ebp7@CU692075
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4ebp1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4ebp@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4ebp1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4ebp2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4ebp7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4ebp@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4ebp@chr16:12334592..12334599, +
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1becp@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1becp@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1becp30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1becp10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1becp@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1becp@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1becp@chr11:1263622..1263627, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1becp8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1becp@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1becp30@MUC5B
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1becp@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1becp8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1becp@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1becp10@BPIFB6
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775p30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775p6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr12:52478564..52478569, +
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775p30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775p6@METTL19
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5p2@FCRL4
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5p@chr12:52478546..52478552, +
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090ddp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090ddp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090ddp@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090ddp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090ddp@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090ddp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090ddp@chr14:103560509..103560517, +
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090ddp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090ddp1@BC131817
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090ddp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090ddp@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090ddp1@BC131817
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525p43@LPP
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525p10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525p58@LPP
4.66e-66FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525p43@LPP
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525p9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525p58@LPP
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525p10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525p9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525p@chr11:1283367..1283377, +
1.46e-50FFCP PHASE2:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE2:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE1:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr4:185197096..185197107, -
1.46e-50FFCP PHASE2:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr11:1262797..1262805, +
1.46e-50FFCP PHASE2:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE1:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53p3@SNX31
1.46e-50FFCP PHASE2:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53p9@KLK11
1.46e-50FFCP PHASE1:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE2:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr4:185197096..185197107, -
1.46e-50FFCP PHASE2:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53p3@SNX31
1.46e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53p24@RPRD1B
1.46e-50FFCP PHASE1:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE1:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53p9@KLK11
1.46e-50FFCP PHASE1:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53p24@RPRD1B
1.46e-50FFCP PHASE1:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53p@chr11:1262797..1262805, +
2.42e-50FFCP PHASE2:Hg19::chr16:70602928..70602938,+#_e896a45235254f3ee2784711b2371302p@chr16:70602928..70602938, +
2.42e-50FFCP PHASE1:Hg19::chr1:205905031..205905037,-#_e896a45235254f3ee2784711b2371302p4@SLC26A9
2.42e-50FFCP PHASE1:Hg19::chr19:51563263..51563273,+#_e896a45235254f3ee2784711b2371302p@chr19:51563263..51563273, +
2.42e-50FFCP PHASE1:Hg19::chr11:1276056..1276069,+#_e896a45235254f3ee2784711b2371302p@chr11:1276056..1276069, +

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