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|located_in=
|located_in=
|name=bile duct
|name=bile duct
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001173;;UBERON:0002294
|part_of=UBERON:0001173;;UBERON:0002294

Latest revision as of 17:31, 12 September 2014

Name:bile duct
Namespace:FANTOM
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0001173(biliary tree),UBERON:0002294(biliary system)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_fda5f37fd992588e06a692670ec5eedfp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_fda5f37fd992588e06a692670ec5eedfp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_fda5f37fd992588e06a692670ec5eedfp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113554186..113554192, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_fda5f37fd992588e06a692670ec5eedfp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_fda5f37fd992588e06a692670ec5eedfp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_fda5f37fd992588e06a692670ec5eedfp@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_fda5f37fd992588e06a692670ec5eedfp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_fda5f37fd992588e06a692670ec5eedfp4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_fda5f37fd992588e06a692670ec5eedfp@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_fda5f37fd992588e06a692670ec5eedfp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_fda5f37fd992588e06a692670ec5eedfp@chr9:116223548..116223551, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:74684893..74684910, -
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_fda5f37fd992588e06a692670ec5eedfp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_fda5f37fd992588e06a692670ec5eedfp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:25530071..25530072, +

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