UBERON:0002546: Difference between revisions
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|located_in= | |located_in= | ||
|name=cranial placode | |name=cranial placode | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000033 | |part_of=UBERON:0000033 |
Latest revision as of 17:33, 12 September 2014
Name: | cranial placode | ||
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Namespace: | FANTOM | ||
Definition: | "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm | ||
Xrefs: |
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Synonyms: | "placode" BROAD [Wikipedia:Placode] | ||
Comments: | Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. | ||
Alt_id: | UBERON:MIAA_0000369-XAO_0000305 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005085(ectodermal placode) |
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part_of: | UBERON:0000033(head) |
Children
is a: | UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921 | p4@Gipc3 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921 | p10@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_e751c663870c04b3e9be3a6d17109921 | p2@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983198..13983203, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921 | p@chr13:48087761..48087775, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921 | p@chr2:152453066..152453075, - |
1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:85334335..85334353, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_e751c663870c04b3e9be3a6d17109921 | p5@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:13508046..13508055, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:150945209..150945220, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_e751c663870c04b3e9be3a6d17109921 | p1@Otol1 |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_e751c663870c04b3e9be3a6d17109921 | p2@Tectb |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921 | p7@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42206730..42206739, - |
1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_e751c663870c04b3e9be3a6d17109921 | p12@B3galt5 |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:78257518..78257522, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:94627290..94627299, - |
1.87e-86 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921 | p@chr4:63079735..63079745, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_e751c663870c04b3e9be3a6d17109921 | p@chr5:147854240..147854249, - |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921 | p3@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921 | p2@Plscr5 |
1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921 | p@chr2:152453066..152453075, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:93235228..93235249, + |
1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921 | p2@Tmprss3 |
1.87e-86 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:28035962..28035983, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843847..172843880, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921 | p7@Pkn3 |
1.87e-86 | FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:78523144..78523177, + |
1.87e-86 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921 | p@chr16:93971325..93971337, - |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921 | p4@Chrna10 |
1.87e-86 | FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921 | p1@Kcna10 |
1.87e-86 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921 | p7@Glt25d2 |
1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_e751c663870c04b3e9be3a6d17109921 | p@chr6:86746562..86746579, - |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_e751c663870c04b3e9be3a6d17109921 | p@chr8:13414266..13414279, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921 | p@chr2:53464168..53464175, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:72652660..72652667, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:89702580..89702593, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:89702580..89702593, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921 | p6@Jag1 |
1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_e751c663870c04b3e9be3a6d17109921 | p@chr14:102297728..102297742, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:78523144..78523177, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:89215306..89215315, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:31283072..31283081, - |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tomt |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921 | p4@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_e751c663870c04b3e9be3a6d17109921 | p1@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921 | p2@Fscn2 |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921 | p2@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921 | p@chr10:67371994..67372010, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_e751c663870c04b3e9be3a6d17109921 | p5@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42207697..42207705, - |
1.87e-86 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921 | p@chr4:130461150..130461185, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983095..13983100, + |
1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921 | p@chr4:101908153..101908163, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:43699228..43699239, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843847..172843880, - |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154693281..154693317, - |
1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921 | p2@Gpr152 |
1.87e-86 | FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:97806034..97806061, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921 | p13@Tsga14 |
1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:3909290..3909299, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:41495920..41495928, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_e751c663870c04b3e9be3a6d17109921 | p@chr2:53464178..53464186, + |
1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921 | p15@Mctp1 |
1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921 | p2@Fscn2 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_e751c663870c04b3e9be3a6d17109921 | p@chr7:29733825..29733837, - |
1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:93235228..93235249, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921 | p4@BC030867 |
1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:28035962..28035983, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:56208792..56208814, - |
1.87e-86 | FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_e751c663870c04b3e9be3a6d17109921 | p5@Fer1l6 |
1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:81012915..81012923, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921 | p4@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983179..13983190, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:150945209..150945220, + |
1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:109905399..109905416, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42206784..42206793, - |
1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921 | p@chr6:113251570..113251578, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_e751c663870c04b3e9be3a6d17109921 | p2@Slc26a5 |
1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154459184..154459195, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_e751c663870c04b3e9be3a6d17109921 | p3@Gm1322 |
1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921 | p@chr6:113251614..113251623, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921 | p1@Dytn |
1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_e751c663870c04b3e9be3a6d17109921 | p@chr19:10536767..10536777, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:16651649..16651655, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_e751c663870c04b3e9be3a6d17109921 | p@chr15:103146966..103146971, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921 | p7@Pkn3 |
1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921 | p@chr19:55256373..55256384, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921 | p4@uc007rhb.1 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tomt |
1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:12848147..12848162, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921 | p@chr4:101908153..101908163, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:31283085..31283097, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:60561636..60561645, - |
1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:8405038..8405048, - |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_e751c663870c04b3e9be3a6d17109921 | p@chr13:58283583..58283607, - |