UBERON:0003051: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=ear vesicle | |name=ear vesicle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0000924 | |part_of=UBERON:0000922;;UBERON:0000924 | ||
Latest revision as of 17:35, 12 September 2014
| Name: | ear vesicle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory vesicle" RELATED [BTO:0002661] "otic vesicle" EXACT [] "otocyst" RELATED [] "OV" RELATED [] | ||
| Alt_id: |
UBERON:0004373 UBERON:XAO_0000006-ZFA_0000051 | ||
| Subset: | vertebrate_core |
Gray40.png]
200px-Gray40.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0009123(otic cup) |
| part_of: | UBERON:0000922(embryo),UBERON:0000924(ectoderm) |
Children
| develops from: | UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex) |
|---|---|
| part of: | UBERON:0005641 (otocyst epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_75fc3970308be340c9f348f4c3017776 | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_75fc3970308be340c9f348f4c3017776 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776 | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776 | p1@Dytn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776 | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_75fc3970308be340c9f348f4c3017776 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_75fc3970308be340c9f348f4c3017776 | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776 | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_75fc3970308be340c9f348f4c3017776 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776 | p4@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_75fc3970308be340c9f348f4c3017776 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_75fc3970308be340c9f348f4c3017776 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776 | p4@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_75fc3970308be340c9f348f4c3017776 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_75fc3970308be340c9f348f4c3017776 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776 | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776 | p21@Espn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_75fc3970308be340c9f348f4c3017776 | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_75fc3970308be340c9f348f4c3017776 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_75fc3970308be340c9f348f4c3017776 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_75fc3970308be340c9f348f4c3017776 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_75fc3970308be340c9f348f4c3017776 | p3@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_75fc3970308be340c9f348f4c3017776 | p5@BC030867 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776 | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776 | p1@Tectb |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
