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{{UBERON
{{UBERON
|id=UBERON:0003071
|alt_id=UBERON:0005060;;UBERON:XAO_0000227-ZFA_0000570
|name=eye primordium
|namespace=
|def="Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
|xref=AAO:0011038;;EFO:0003541;;EHDAA2:0004431;;TAO:0000570;;XAO:0000227;;XAO:0004090;;ZFA:0000570
|is_a=UBERON:0005085
|synonym="eye anlage" RELATED [XAO:0000227];;"eye field" RELATED [];;"eye placode" EXACT [OBOL:automatic];;"occular primordium" EXACT [];;"ocular primordium" EXACT [];;"optic field" RELATED [];;"optic placode" EXACT [GO:0046619];;"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm];;"optic primordium" EXACT []
|comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
|comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
|alt_id=UBERON:0005060;;UBERON:XAO_0000227-ZFA_0000570
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003056
|develops_from=UBERON:0003056
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003071
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0010371
|is_obsolete=
|located_in=
|located_in=
|name=eye primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003056
|part_of=UBERON:0003056
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="eye anlage" RELATED [XAO:0000227];;"eye field" RELATED [];;"eye placode" EXACT [OBOL:automatic];;"occular primordium" EXACT [];;"ocular primordium" EXACT [];;"optic field" RELATED [];;"optic placode" EXACT [GO:0046619];;"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm];;"optic primordium" EXACT []
|union_of=
|xref=AAO:0011038;;EFO:0003541;;EHDAA2:0004431;;TAO:0000570;;XAO:0000227;;XAO:0004090;;ZFA:0000570
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:eye primordium
Namespace:FANTOM
Definition:"Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
Xrefs:
links:

AAO:0011038
EFO:0003541
EHDAA2:0004431
TAO:0000570
XAO:0000227
XAO:0004090

ZFA:0000570
Synonyms: "eye anlage" RELATED [XAO:0000227]
"eye field" RELATED []
"eye placode" EXACT [OBOL:automatic]
"occular primordium" EXACT []
"ocular primordium" EXACT []
"optic field" RELATED []
"optic placode" EXACT [GO:0046619]
"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm]
"optic primordium" EXACT []
Comments:AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
Alt_id: UBERON:0005060
UBERON:XAO_0000227-ZFA_0000570

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0003056(pre-chordal neural plate)
part_of:UBERON:0003056(pre-chordal neural plate)



Children

develops from:UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fdp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fdp4@Dct
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fdp3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fdp4@Dct
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fdp6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fdp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fdp5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fdp5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fdp6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fdp8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fdp1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fdp8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fdp1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fdp3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31817987..31818013, +
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52p@chr7:64675015..64675028, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06bp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06bp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06bp6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06bp@chr6:97891135..97891147, +
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3p1@4933429O19Rik
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_8dc99c3d4a72fec688f6a91251b2ad66p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_8dc99c3d4a72fec688f6a91251b2ad66p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_8dc99c3d4a72fec688f6a91251b2ad66p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Opn4
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_8dc99c3d4a72fec688f6a91251b2ad66p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@ENSMUST00000173365
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_8dc99c3d4a72fec688f6a91251b2ad66p3@Rrh
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_8dc99c3d4a72fec688f6a91251b2ad66p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_8dc99c3d4a72fec688f6a91251b2ad66p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31818629..31818644, +

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