UBERON:0003075: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=neural plate | |name=neural plate | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0002346 | |part_of=UBERON:0000922;;UBERON:0002346 | ||
Latest revision as of 17:36, 12 September 2014
| Name: | neural plate | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"lamina neuralis" RELATED LATIN [Wikipedia:Neural_plate] "presumptive central nervous system" RELATED [] | ||
| Alt_id: | UBERON:XAO_0000249-ZFA_0000132 | ||
| Subset: |
uberon_slim vertebrate_core |
Neural_Crest.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium),UBERON:0016879(future central nervous system) |
|---|---|
| develops_from: | UBERON:0002346(neurectoderm),UBERON:0007284(presumptive neural plate) |
| part_of: | UBERON:0000922(embryo),UBERON:0002346(neurectoderm) |
Children
| develops from: | UBERON:0002342 (neural crest),UBERON:0007135 (neural keel) |
|---|---|
| part of: | UBERON:0003056 (pre-chordal neural plate),UBERON:0003057 (chordal neural plate),UBERON:0005061 (neural groove) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003075 (neural plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.11e-109 | FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_adda4f6031bc39e99890946d58843526 | p3@CTNND2 |
| 9.11e-109 | FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_adda4f6031bc39e99890946d58843526 | p3@CTNND2 |
| 3.26e-108 | FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_851fda54f8583ed73da1e7cf4f8c2378 | p3@PAX6 |
| 3.26e-108 | FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_851fda54f8583ed73da1e7cf4f8c2378 | p3@PAX6 |
| 7.37e-104 | FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_691164c45449f3b4cd16a18fc56fc1ee | p1@ANKFN1 |
| 7.37e-104 | FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_691164c45449f3b4cd16a18fc56fc1ee | p1@ANKFN1 |
| 2.38e-100 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_7f51f75134b74aa09b41e972ad7b5109 | p1@ENST00000412957 |
| 2.38e-100 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_7f51f75134b74aa09b41e972ad7b5109 | p1@ENST00000412957 |
| 3.23e-100 | FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_f974b5c1b3fbc4ce766b04e504fb109f | p@chr5:87439352..87439386, - |
| 3.23e-100 | FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_f974b5c1b3fbc4ce766b04e504fb109f | p@chr5:87439352..87439386, - |
| 1.2e-98 | FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_48da69992f7a883496c95f17af51898d | p2@RFX4 |
| 1.2e-98 | FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_48da69992f7a883496c95f17af51898d | p2@RFX4 |
| 1.54e-98 | FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_cadab8b439004de6f88aa89c3346f9f0 | p8@CTNND2 |
| 1.54e-98 | FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_cadab8b439004de6f88aa89c3346f9f0 | p8@CTNND2 |
| 2.06e-98 | FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_bc19733dc6f4d880aa153c277eeb06db | p3@NRXN1 |
| 2.06e-98 | FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_bc19733dc6f4d880aa153c277eeb06db | p3@NRXN1 |
| 4.02e-98 | FFCP PHASE1:Hg19::chr8:18541544..18541592,-#_93d4d061e38a73f4b22558b3e8b4707b | p2@PSD3 |
| 4.02e-98 | FFCP PHASE2:Hg19::chr8:18541544..18541592,-#_93d4d061e38a73f4b22558b3e8b4707b | p2@PSD3 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_34a01792ba7b26ca746f75d834d3d508 | p7@DTNA |
| 4.6e-98 | FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_34a01792ba7b26ca746f75d834d3d508 | p7@DTNA |
| 9.29e-98 | FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_cb0684b43718275b277948a4672c9e9c | p6@BSCL2 |
| 9.29e-98 | FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_cb0684b43718275b277948a4672c9e9c | p6@BSCL2 |
| 2.26e-97 | FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_a13c17713c9cf092b3740d522cef15a1 | p@chr5:146314142..146314146, - |
| 2.26e-97 | FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_a13c17713c9cf092b3740d522cef15a1 | p@chr5:146314142..146314146, - |
| 1.06e-96 | FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_4d32b1a76d5121947bebdfa3c715c798 | p2@MARCH1 |
| 1.06e-96 | FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_4d32b1a76d5121947bebdfa3c715c798 | p2@MARCH1 |
| 1.15e-96 | FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_bee718be99e7dd6d1f225753d7fa2994 | p2@SRCIN1 |
| 1.15e-96 | FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_bee718be99e7dd6d1f225753d7fa2994 | p2@SRCIN1 |
| 1.21e-96 | FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_6437a0597f6973b0753d0657a2879445 | p1@GABRG1 |
| 1.21e-96 | FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_6437a0597f6973b0753d0657a2879445 | p1@GABRG1 |
| 2.85e-96 | FFCP PHASE2:Hg19::chr19:30016395..30016433,+#_aaa44f693f81f51e27c88fd68f369954 | p@chr19:30016395..30016433, + |
| 2.85e-96 | FFCP PHASE1:Hg19::chr19:30016395..30016433,+#_aaa44f693f81f51e27c88fd68f369954 | p@chr19:30016395..30016433, + |
| 4.51e-96 | FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_9541d7bc84532cc5974f5cd21dbf1f4e | p2@CTNND2 |
| 4.51e-96 | FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_9541d7bc84532cc5974f5cd21dbf1f4e | p2@CTNND2 |
| 7.48e-96 | FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_6b74394e6a4930ace2e93e1e71309d86 | p4@RFX4 |
| 7.48e-96 | FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_6b74394e6a4930ace2e93e1e71309d86 | p4@RFX4 |
| 7.68e-96 | FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_f85759f6db84e143026fbaf43e3276f9 | p9@PRKACB |
| 7.68e-96 | FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_f85759f6db84e143026fbaf43e3276f9 | p9@PRKACB |
| 8.2e-96 | FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_231c16a3b305548b5a3dd72d057b8838 | p@chr15:46702499..46702523, + |
| 8.2e-96 | FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_231c16a3b305548b5a3dd72d057b8838 | p@chr15:46702499..46702523, + |
| 8.26e-96 | FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_6151961ae29fc59948050710d456521b | p4@LINC00461 |
| 8.26e-96 | FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_6151961ae29fc59948050710d456521b | p4@LINC00461 |
| 9.79e-96 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_89a5b487fd80f7740947ba58eee0e413 | p6@GPM6B |
| 9.79e-96 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_89a5b487fd80f7740947ba58eee0e413 | p6@GPM6B |
| 1.45e-95 | FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_1a03cc219a3810009f2808918273e95e | p17@PRKACB |
| 1.45e-95 | FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_1a03cc219a3810009f2808918273e95e | p17@PRKACB |
| 1.98e-95 | FFCP PHASE2:Hg19::chr16:4850844..4850888,-#_0387c31fda800207870085b683156afb | p@chr16:4850844..4850888, - |
| 1.98e-95 | FFCP PHASE1:Hg19::chr16:4850844..4850888,-#_0387c31fda800207870085b683156afb | p@chr16:4850844..4850888, - |
| 2.2e-95 | FFCP PHASE1:Hg19::chr6:136848260..136848296,-#_2dce64811e2b392a70042e4ff815958e | p4@MAP7 |
| 2.2e-95 | FFCP PHASE2:Hg19::chr6:136848260..136848296,-#_2dce64811e2b392a70042e4ff815958e | p4@MAP7 |
| 3.63e-95 | FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_88602361310a7b8a02db64d28542cfe6 | p17@NTRK2 |
| 3.63e-95 | FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_88602361310a7b8a02db64d28542cfe6 | p17@NTRK2 |
| 3.98e-95 | FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_8b8b739c952e081bd89b171cd9c3f6e9 | p8@PRKCZ |
| 3.98e-95 | FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_8b8b739c952e081bd89b171cd9c3f6e9 | p8@PRKCZ |
| 4.64e-95 | FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_5a4cb5f96568b181af263db5a8c45d0c | p1@RFX4 |
| 4.64e-95 | FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_5a4cb5f96568b181af263db5a8c45d0c | p1@RFX4 |
| 6.45e-95 | FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_f922bbba864e83868d38c6340f2ca720 | p@chr6:80131670..80131724, + |
| 6.45e-95 | FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_f922bbba864e83868d38c6340f2ca720 | p@chr6:80131670..80131724, + |
| 1.07e-94 | FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_39e48f1274732675fb9e9beae8814088 | p1@ATP10B |
| 1.07e-94 | FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_39e48f1274732675fb9e9beae8814088 | p1@ATP10B |
| 1.15e-94 | FFCP PHASE2:Hg19::chr16:76311254..76311274,+#_8ea83a6ca7622d81ae89e6b7fafab1a1 | p2@CNTNAP4 |
| 1.15e-94 | FFCP PHASE1:Hg19::chr16:76311254..76311274,+#_8ea83a6ca7622d81ae89e6b7fafab1a1 | p2@CNTNAP4 |
| 1.24e-94 | FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_1fa70e017669a786ec140191f69fea3b | p2@GABRG1 |
| 1.24e-94 | FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_1fa70e017669a786ec140191f69fea3b | p2@GABRG1 |
| 3.41e-94 | FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_1a4333415b1c64a2b2540c2823a5b37d | p@chr7:47420733..47420758, - |
| 3.41e-94 | FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_1a4333415b1c64a2b2540c2823a5b37d | p@chr7:47420733..47420758, - |
| 3.86e-94 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_b9472a1f8ca850af8d8443f2fa313841 | p9@GPM6B |
| 3.86e-94 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_b9472a1f8ca850af8d8443f2fa313841 | p9@GPM6B |
| 4.07e-94 | FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_3b0ef7cb39e6c7f6eded89c0b514bec6 | p4@APC |
| 4.07e-94 | FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_3b0ef7cb39e6c7f6eded89c0b514bec6 | p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343 |
| 4.07e-94 | FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_3b0ef7cb39e6c7f6eded89c0b514bec6 | p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343 |
| 4.07e-94 | FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_3b0ef7cb39e6c7f6eded89c0b514bec6 | p4@APC |
| 1.32e-93 | FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_a7d6c8da7ef175bbeebc6e2d92ac0b1a | p10@DTNA |
| 1.32e-93 | FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_a7d6c8da7ef175bbeebc6e2d92ac0b1a | p10@DTNA |
| 1.41e-93 | FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_06ff8b37102329ec70e57cb5e9669aca | p2@KCNJ16 |
| 1.41e-93 | FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_06ff8b37102329ec70e57cb5e9669aca | p2@KCNJ16 |
| 1.62e-93 | FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_8095122c193159ae69ff85178516bf36 | p7@GFAP |
| 1.62e-93 | FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_8095122c193159ae69ff85178516bf36 | p7@GFAP |
| 1.62e-93 | FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_8095122c193159ae69ff85178516bf36 | p5@DTNA |
| 1.62e-93 | FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_8095122c193159ae69ff85178516bf36 | p5@DTNA |
| 3.0e-93 | FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_a7284a4cdf67b483c05e8c28e636a1d8 | p8@DST |
| 3.0e-93 | FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_a7284a4cdf67b483c05e8c28e636a1d8 | p8@DST |
| 4.29e-93 | FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_36aaa09dbcf9c284512cd33b11b2d6cb | p@chr17:7558857..7558903, + |
| 4.29e-93 | FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_36aaa09dbcf9c284512cd33b11b2d6cb | p@chr17:7558857..7558903, + |
| 4.3e-93 | FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_22df4eb7f291cd68677747dc76337dab | p15@CTNND2 |
| 4.3e-93 | FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_22df4eb7f291cd68677747dc76337dab | p15@CTNND2 |
| 4.84e-93 | FFCP PHASE1:Hg19::chr10:25940658..25940700,+#_ceab3451f49d221594f009a63050c9e5 | p1@ENST00000450270 |
| 4.84e-93 | FFCP PHASE2:Hg19::chr10:25940658..25940700,+#_ceab3451f49d221594f009a63050c9e5 | p1@ENST00000450270 |
| 5.06e-93 | FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_3c3e875d952071ed6dae6fa02b5a878a | p2@PAQR6 |
| 5.06e-93 | FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_3c3e875d952071ed6dae6fa02b5a878a | p2@PAQR6 |
| 5.69e-93 | FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_52c2fb8cab4f58bc50390d0af6fa2791 | p12@TJP1 |
| 5.69e-93 | FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_52c2fb8cab4f58bc50390d0af6fa2791 | p12@TJP1 |
| 6.08e-93 | FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_645b6677b6c59e29a00e292e6378fab0 | p9@CHN2 |
| 6.08e-93 | FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_645b6677b6c59e29a00e292e6378fab0 | p9@CHN2 |
| 6.68e-93 | FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_16850ecd2c1b670de32b73977115f888 | p3@SFXN5 |
| 6.68e-93 | FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_16850ecd2c1b670de32b73977115f888 | p3@SFXN5 |
| 1.1e-92 | FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_1f1b149ab4c60697baeaf548ed61f254 | p2@uc002fch.1 |
| 1.1e-92 | FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_1f1b149ab4c60697baeaf548ed61f254 | p2@uc002fch.1 |
| 2.68e-92 | FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_12b86633237305737e754bbbc8907863 | p1@ANK3 |
| 2.68e-92 | FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_12b86633237305737e754bbbc8907863 | p1@ANK3 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
