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{{UBERON
{{UBERON
|id=UBERON:0003129
|name=skull
|namespace=
|def="Anatomical structure that is part of the head consisting entirely of cranium and mandible." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, Wikipedia:Skull]
|xref=AAO:0000109;;BTO:0001295;;FMA:46565;;GAID:82;;galen:Skull;;MESH:A.02.835.232.781;;ncithesaurus:Skull;;OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA
|is_a=UBERON:0004765
|synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED []
|comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP].
|alt_id=
|alt_id=
|disjoint_from=
|comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003129
|is_a=UBERON:0000075 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000033;;UBERON:0005944
|name=skull
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0010323
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED []
|union_of=
|xref=BTO:0001295;;EHDAA2:0000325;;EMAPA:17680;;FMA:46565;;GAID:82;;galen:Skull;;MESH:A.02.835.232.781;;ncithesaurus:Skull;;OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA;;SCTID:110530005
}}
}}

Latest revision as of 17:38, 12 September 2014

Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_40d70c2e6c9363196e5764093c9b0a2ep5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_40d70c2e6c9363196e5764093c9b0a2ep4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Otof
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otog
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_40d70c2e6c9363196e5764093c9b0a2ep41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2ep4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2ep13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2ep4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2ep2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otof

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